RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 APOBP04114 4563 aaKnown RBP11.7□□□□□ -0.54
SHKBP1-204ENST00000594862 HIGD1CA8MV81 97 aa11.69□□□□□ -0.54
SHKBP1-204ENST00000594862 EPM2AB3EWF7 344 aa11.69□□□□□ -0.54
SHKBP1-204ENST00000594862 AMTP48728 403 aa11.69□□□□□ -0.54
SHKBP1-204ENST00000594862 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.68□□□□□ -0.54
SHKBP1-204ENST00000594862 LINC00269Q8N2A0 174 aa11.68□□□□□ -0.54
SHKBP1-204ENST00000594862 ISOC2Q96AB3 205 aa11.68□□□□□ -0.54
SHKBP1-204ENST00000594862 NAT8Q9UHE5 227 aa11.68□□□□□ -0.54
SHKBP1-204ENST00000594862 TRAV8-4A0A0B4J246 113 aa11.67□□□□□ -0.54
SHKBP1-204ENST00000594862 TRAV26-2A0A0B4J265 109 aa11.67□□□□□ -0.54
SHKBP1-204ENST00000594862 REG3AQ06141 175 aa11.67□□□□□ -0.54
SHKBP1-204ENST00000594862 TMEM191AQ9H0A3 160 aa11.67□□□□□ -0.54
SHKBP1-204ENST00000594862 HLA-DQA1P01909 254 aa11.66□□□□□ -0.54
SHKBP1-204ENST00000594862 RIGQ13278 110 aa11.66□□□□□ -0.54
SHKBP1-204ENST00000594862 V9GYV3 84 aa11.66□□□□□ -0.54
SHKBP1-204ENST00000594862 TRBV6-5A0A0K0K1A5 114 aa11.65□□□□□ -0.54
SHKBP1-204ENST00000594862 H7C423 109 aa11.65□□□□□ -0.54
SHKBP1-204ENST00000594862 APCSP02743 223 aa11.65□□□□□ -0.54
SHKBP1-204ENST00000594862 RPL23P62829 140 aaKnown RBP11.65□□□□□ -0.54
SHKBP1-204ENST00000594862 ADIRFQ15847 76 aa11.65□□□□□ -0.54
SHKBP1-204ENST00000594862 MRAP2Q96G30 205 aa11.65□□□□□ -0.54
SHKBP1-204ENST00000594862 NAT8BQ9UHF3 227 aa11.65□□□□□ -0.54
SHKBP1-204ENST00000594862 SDHAF1A6NFY7 115 aa11.64□□□□□ -0.55
SHKBP1-204ENST00000594862 CLPSL2Q6UWE3 100 aa11.64□□□□□ -0.55
SHKBP1-204ENST00000594862 C20orf203Q8NBC4 194 aa11.64□□□□□ -0.55
SHKBP1-204ENST00000594862 RPL39LQ96EH5 51 aaKnown RBP11.64□□□□□ -0.55
SHKBP1-204ENST00000594862 I3L3M4 83 aa11.63□□□□□ -0.55
SHKBP1-204ENST00000594862 PPP1R17O96001 155 aa11.63□□□□□ -0.55
SHKBP1-204ENST00000594862 ST20Q9HBF5 79 aa11.63□□□□□ -0.55
SHKBP1-204ENST00000594862 USP17L23D6RBM5 183 aa11.62□□□□□ -0.55
SHKBP1-204ENST00000594862 AMMECR1LQ6DCA0 310 aa11.62□□□□□ -0.55
SHKBP1-204ENST00000594862 Q6ZSA8 131 aa11.62□□□□□ -0.55
SHKBP1-204ENST00000594862 NUP35Q8NFH5 326 aa11.62□□□□□ -0.55
SHKBP1-204ENST00000594862 A0A1B0GW15 77 aa11.61□□□□□ -0.55
SHKBP1-204ENST00000594862 FAM229AH3BQW9 127 aa11.61□□□□□ -0.55
SHKBP1-204ENST00000594862 ZNF25P17030 456 aaPredicted RBP11.61□□□□□ -0.55
SHKBP1-204ENST00000594862 Q5VSD8 79 aa11.61□□□□□ -0.55
SHKBP1-204ENST00000594862 CLRN3Q8NCR9 226 aa11.61□□□□□ -0.55
SHKBP1-204ENST00000594862 IGLV4-60A0A075B6I1 120 aa11.6□□□□□ -0.55
SHKBP1-204ENST00000594862 C9JQL5 133 aa11.6□□□□□ -0.55
SHKBP1-204ENST00000594862 PMCHP20382 165 aa11.6□□□□□ -0.55
SHKBP1-204ENST00000594862 RAB14P61106 215 aa11.6□□□□□ -0.55
SHKBP1-204ENST00000594862 DGAT2L7PQ6IED9 249 aa11.6□□□□□ -0.55
SHKBP1-204ENST00000594862 HERC1Q15751 4861 aa11.6□□□□□ -0.55
SHKBP1-204ENST00000594862 SMIM27A0A1W2PRY6 76 aa11.59□□□□□ -0.55
SHKBP1-204ENST00000594862 S100A8P05109 93 aa11.59□□□□□ -0.55
SHKBP1-204ENST00000594862 RAB4AP20338 218 aa11.59□□□□□ -0.55
SHKBP1-204ENST00000594862 SRSF3P84103 164 aaKnown RBP11.58□□□□□ -0.56
SHKBP1-204ENST00000594862 KRTAP26-1Q6PEX3 210 aa11.58□□□□□ -0.56
SHKBP1-204ENST00000594862 AMN1Q8IY45 258 aa11.58□□□□□ -0.56
SHKBP1-204ENST00000594862 RNF185Q96GF1 192 aa11.58□□□□□ -0.56
SHKBP1-204ENST00000594862 BTF3L4Q96K17 158 aa11.58□□□□□ -0.56
SHKBP1-204ENST00000594862 FAM30AQ9NZY2 134 aa11.58□□□□□ -0.56
SHKBP1-204ENST00000594862 IGLV10-54A0A075B6I4 117 aa11.57□□□□□ -0.56
SHKBP1-204ENST00000594862 TRBV27A0A0K0K1C4 114 aa11.57□□□□□ -0.56
SHKBP1-204ENST00000594862 SMAGPQ0VAQ4 97 aa11.57□□□□□ -0.56
SHKBP1-204ENST00000594862 RNASEKQ6P5S7 137 aaKnown RBP11.57□□□□□ -0.56
SHKBP1-204ENST00000594862 DEFB104AQ8WTQ1 72 aa11.57□□□□□ -0.56
SHKBP1-204ENST00000594862 TMEM101Q96IK0 257 aa11.57□□□□□ -0.56
SHKBP1-204ENST00000594862 PPP1R2P9O14990 202 aa11.56□□□□□ -0.56
SHKBP1-204ENST00000594862 FGF6P10767 208 aa11.56□□□□□ -0.56
SHKBP1-204ENST00000594862 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.55□□□□□ -0.56
SHKBP1-204ENST00000594862 IGKV2-29A2NJV5 120 aaPredicted RBP11.55□□□□□ -0.56
SHKBP1-204ENST00000594862 LINC00862A6NCI5 91 aa11.55□□□□□ -0.56
SHKBP1-204ENST00000594862 VCYO14598 125 aa11.55□□□□□ -0.56
SHKBP1-204ENST00000594862 SMR3BP02814 79 aaPredicted RBP11.55□□□□□ -0.56
SHKBP1-204ENST00000594862 PRSS1P07477 247 aa11.55□□□□□ -0.56
SHKBP1-204ENST00000594862 POLR2KP53803 58 aaKnown RBP11.55□□□□□ -0.56
SHKBP1-204ENST00000594862 TMEM242Q9NWH2 141 aa11.55□□□□□ -0.56
SHKBP1-204ENST00000594862 F8W036 122 aa11.54□□□□□ -0.56
SHKBP1-204ENST00000594862 TSHBP01222 138 aa11.54□□□□□ -0.56
SHKBP1-204ENST00000594862 ESDP10768 282 aa11.54□□□□□ -0.56
SHKBP1-204ENST00000594862 HAMPP81172 84 aa11.54□□□□□ -0.56
SHKBP1-204ENST00000594862 PNRC1Q12796 327 aaPredicted RBP11.54□□□□□ -0.56
SHKBP1-204ENST00000594862 FAM104BQ5XKR9 115 aa11.54□□□□□ -0.56
SHKBP1-204ENST00000594862 CFAP161Q6P656 301 aa11.54□□□□□ -0.56
SHKBP1-204ENST00000594862 AP5S1Q9NUS5 200 aa11.54□□□□□ -0.56
SHKBP1-204ENST00000594862 C7orf77A4D0Y5 90 aa11.53□□□□□ -0.56
SHKBP1-204ENST00000594862 TCAPO15273 167 aa11.53□□□□□ -0.56
SHKBP1-204ENST00000594862 PLA2G1BP04054 148 aaKnown RBP11.53□□□□□ -0.56
SHKBP1-204ENST00000594862 INAFM2P0DMQ5 153 aa11.53□□□□□ -0.56
SHKBP1-204ENST00000594862 FCER1GP30273 86 aa11.53□□□□□ -0.56
SHKBP1-204ENST00000594862 RPS10P46783 165 aaKnown RBP11.53□□□□□ -0.56
SHKBP1-204ENST00000594862 CAMPP49913 170 aa11.53□□□□□ -0.56
SHKBP1-204ENST00000594862 SUMO2P61956 95 aaKnown RBP11.53□□□□□ -0.56
SHKBP1-204ENST00000594862 LINC01620Q4KN68 170 aa11.53□□□□□ -0.56
SHKBP1-204ENST00000594862 OR5A1Q8NGJ0 315 aa11.53□□□□□ -0.56
SHKBP1-204ENST00000594862 KIR2DL4Q99706 377 aa11.53□□□□□ -0.56
SHKBP1-204ENST00000594862 CHAC1Q9BUX1 264 aa11.53□□□□□ -0.56
SHKBP1-204ENST00000594862 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.52□□□□□ -0.57
SHKBP1-204ENST00000594862 CNBPP62633 177 aaKnown RBP11.52□□□□□ -0.57
SHKBP1-204ENST00000594862 HBBP68871 147 aa11.52□□□□□ -0.57
SHKBP1-204ENST00000594862 MRPL52Q86TS9 123 aaKnown RBP11.52□□□□□ -0.57
SHKBP1-204ENST00000594862 C9orf163Q8N9P6 203 aa11.52□□□□□ -0.57
SHKBP1-204ENST00000594862 DMBT1Q9UGM3 2413 aaPredicted RBP11.52□□□□□ -0.57
SHKBP1-204ENST00000594862 hDV102S1A0JD36 115 aa11.51□□□□□ -0.57
SHKBP1-204ENST00000594862 GAS8-AS1O95177 125 aa11.51□□□□□ -0.57
SHKBP1-204ENST00000594862 SCXQ7RTU7 201 aa11.51□□□□□ -0.57
SHKBP1-204ENST00000594862 ATP5L2Q7Z4Y8 100 aa11.51□□□□□ -0.57
SHKBP1-204ENST00000594862 NRACQ8N912 160 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms