RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 NEXN-AS1Q8NBZ9 246 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 Q8TAT8 98 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 RAX2Q96IS3 184 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 C17orf77Q96MU5 243 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 PRADC1Q9BSG0 188 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 FBXL15Q9H469 300 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 RETNQ9HD89 108 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 CTSZQ9UBR2 303 aa3.1□□□□□ -1.91
LIG3-211ENST00000588713 APOBP04114 4563 aaKnown RBP3.1□□□□□ -1.91
LIG3-211ENST00000588713 IGHV3-21A0A0B4J1V1 117 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 A0A0B4J2C4 111 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 IGHV7-4-1A0A0J9YVY3 117 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 TRBV7-9A0A0J9YWB2 115 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 FAM240AA0A1B0GVK7 77 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 C16orf90A8MZG2 172 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 NBR2O15453 112 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 ENSAO43768 121 aaKnown RBP3.09□□□□□ -1.91
LIG3-211ENST00000588713 SNCGO76070 127 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 TCL1BO95988 128 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 PPP1R17O96001 155 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 ORM1P02763 201 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 TRGV3P03979 118 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 HLA-DMBP28068 263 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 RPL13AP40429 203 aaKnown RBP3.09□□□□□ -1.91
LIG3-211ENST00000588713 PSMB2P49721 201 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 NDUFV3P56181 108 aaKnown RBP3.09□□□□□ -1.91
LIG3-211ENST00000588713 KRTAP10-2P60368 255 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 SERTAD4-AS1Q5TG53 156 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 SCGB1D4Q6XE38 83 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 GLMPQ8WWB7 406 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 BAALCQ8WXS3 180 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 CARD19Q96LW7 228 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 DUX3Q96PT4 197 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 SPANXDQ9BXN6 97 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 SS18L2Q9UHA2 77 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 LENEPQ9Y5L5 61 aa3.09□□□□□ -1.91
LIG3-211ENST00000588713 PKD1P98161 4303 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 IGHV3-72A0A0B4J1Y9 119 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 LOC107984156A0A0G2JMH3 177 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 A0A0J9YY99 117 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 NUPR2A6NF83 97 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 C11orf86A6NJI1 115 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 BUB1B-PAK6H3BSN5 160 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 SLC25A20O43772 301 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 CLEC3BP05452 202 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 PPIFP30405 207 aaKnown RBP3.08□□□□□ -1.92
LIG3-211ENST00000588713 SUMO2P61956 95 aaKnown RBP3.08□□□□□ -1.92
LIG3-211ENST00000588713 KLK9Q2XQG4 91 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 C9orf66Q5T8R8 295 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 ARL17AQ8IVW1 177 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 DYNAPQ8N1N2 210 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 NPBQ8NG41 125 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 OR10J6PQ8NGY7 276 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 SCGB3A1Q96QR1 104 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 C21orf62Q9NYP8 219 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 MDFICQ9P1T7 246 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 KLK9Q9UKQ9 250 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 UFC1Q9Y3C8 167 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 LRP1BQ9NZR2 4599 aa3.08□□□□□ -1.92
LIG3-211ENST00000588713 DNAH17Q9UFH2 4485 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 SRRM2Q9UQ35 2752 aaKnown RBP3.07□□□□□ -1.92
LIG3-211ENST00000588713 MUC2Q02817 5179 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 TNCP24821 2201 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 IGLV4-69A0A075B6H9 119 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.07□□□□□ -1.92
LIG3-211ENST00000588713 IGKV3D-20A0A0C4DH25 116 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 A0A0J9YX75 114 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 GAGE12JA6NER3 117 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 H3BMM0 161 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 LY6LH3BQJ8 138 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 H3BT86 120 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 GAGE7O76087 117 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 NXPH4O95158 308 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 GAS8-AS1O95177 125 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 BRI3O95415 125 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 IGHV3-30P01768 117 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 GAGE12FP0CL80 117 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 GAGE12GP0CL81 117 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 GAGE12IP0CL82 117 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 APELAP0DMC3 54 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 SCGB1C2P0DMR2 95 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 IGHV3-30-5P0DP03 117 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 IFITM1P13164 125 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 GATA1P15976 413 aaPredicted RBP3.07□□□□□ -1.92
LIG3-211ENST00000588713 GAGE2BQ13066 116 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 GAGE4Q13068 117 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 SRSF9Q13242 221 aaKnown RBP eCLIP3.07□□□□□ -1.92
LIG3-211ENST00000588713 ATXN8Q156A1 80 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 GAGE2EQ4V326 116 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 SPANXN1Q5VSR9 72 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 KRTAP5-3Q6L8H2 238 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 LYPD2Q6UXB3 125 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 C2orf66Q6UXQ4 117 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 C9orf47Q6ZRZ4 202 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 C18orf65Q6ZTR6 163 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 VMO1Q7Z5L0 202 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 POM121L12Q8N7R1 296 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 RASL10AQ92737 203 aa3.07□□□□□ -1.92
LIG3-211ENST00000588713 UBE2WQ96B02 151 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms