RNA–Protein interactions for RNA: ENST00000588687.5

CCDC43-204, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 721 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-204ENST00000588687 GAGE12HA6NDE8 117 aa11.53□□□□□ -0.56
CCDC43-204ENST00000588687 H2AFB1P0C5Y9 115 aa11.53□□□□□ -0.56
CCDC43-204ENST00000588687 RPS20P60866 119 aaKnown RBP11.53□□□□□ -0.56
CCDC43-204ENST00000588687 CCL20P78556 96 aa11.53□□□□□ -0.56
CCDC43-204ENST00000588687 WDR73Q6P4I2 378 aa11.53□□□□□ -0.56
CCDC43-204ENST00000588687 C7orf33Q8WU49 177 aa11.53□□□□□ -0.56
CCDC43-204ENST00000588687 TRBV20OR9-2A0A075B6H5 130 aa11.52□□□□□ -0.57
CCDC43-204ENST00000588687 GVQW2A0A096LPI5 108 aaPredicted RBP11.52□□□□□ -0.57
CCDC43-204ENST00000588687 NDUFS6O75380 124 aaKnown RBP11.52□□□□□ -0.57
CCDC43-204ENST00000588687 RPS10P46783 165 aaKnown RBP11.52□□□□□ -0.57
CCDC43-204ENST00000588687 AMTP48728 403 aa11.52□□□□□ -0.57
CCDC43-204ENST00000588687 HIGD2BQ4VC39 106 aa11.52□□□□□ -0.57
CCDC43-204ENST00000588687 DPH3Q96FX2 82 aa11.52□□□□□ -0.57
CCDC43-204ENST00000588687 DPH3P1Q9H4G8 78 aa11.52□□□□□ -0.57
CCDC43-204ENST00000588687 BCL2L11O43521 198 aa11.51□□□□□ -0.57
CCDC43-204ENST00000588687 CTRLP40313 264 aa11.51□□□□□ -0.57
CCDC43-204ENST00000588687 SULT1A2P50226 295 aa11.51□□□□□ -0.57
CCDC43-204ENST00000588687 SMIM12Q96EX1 92 aa11.51□□□□□ -0.57
CCDC43-204ENST00000588687 CNFNQ9BYD5 112 aa11.51□□□□□ -0.57
CCDC43-204ENST00000588687 MANBALQ9NQG1 85 aa11.51□□□□□ -0.57
CCDC43-204ENST00000588687 F2Z2F3 143 aa11.5□□□□□ -0.57
CCDC43-204ENST00000588687 UBE2L6O14933 153 aa11.5□□□□□ -0.57
CCDC43-204ENST00000588687 TRGC1P0CF51 173 aa11.5□□□□□ -0.57
CCDC43-204ENST00000588687 COTL1Q14019 142 aa11.5□□□□□ -0.57
CCDC43-204ENST00000588687 MAJINQ3KP22 176 aa11.5□□□□□ -0.57
CCDC43-204ENST00000588687 LYZL1Q6UWQ5 148 aa11.5□□□□□ -0.57
CCDC43-204ENST00000588687 GNG13Q9P2W3 67 aa11.5□□□□□ -0.57
CCDC43-204ENST00000588687 A0A096LNI7 61 aa11.49□□□□□ -0.57
CCDC43-204ENST00000588687 IGKV2-24A0A0C4DH68 120 aa11.49□□□□□ -0.57
CCDC43-204ENST00000588687 A0A0J9YXV3 536 aa11.49□□□□□ -0.57
CCDC43-204ENST00000588687 RAB19A4D1S5 217 aa11.49□□□□□ -0.57
CCDC43-204ENST00000588687 NTF3P20783 257 aa11.49□□□□□ -0.57
CCDC43-204ENST00000588687 Q6ZNX1 250 aa11.49□□□□□ -0.57
CCDC43-204ENST00000588687 BATF3Q9NR55 127 aa11.49□□□□□ -0.57
CCDC43-204ENST00000588687 LPAP08519 4548 aa11.48□□□□□ -0.57
CCDC43-204ENST00000588687 TRAV1-1A0A0B4J248 108 aa11.48□□□□□ -0.57
CCDC43-204ENST00000588687 HMSDA8MTL9 139 aa11.48□□□□□ -0.57
CCDC43-204ENST00000588687 KRTAP10-8P60410 259 aa11.48□□□□□ -0.57
CCDC43-204ENST00000588687 CFAP161Q6P656 301 aa11.48□□□□□ -0.57
CCDC43-204ENST00000588687 C9orf62Q8N4C0 152 aa11.48□□□□□ -0.57
CCDC43-204ENST00000588687 STPG4Q8N801 248 aa11.48□□□□□ -0.57
CCDC43-204ENST00000588687 GATD1Q8NB37 220 aa11.48□□□□□ -0.57
CCDC43-204ENST00000588687 CHCHD10Q8WYQ3 142 aaPredicted RBP11.48□□□□□ -0.57
CCDC43-204ENST00000588687 TRAV26-2A0A0B4J265 109 aa11.47□□□□□ -0.57
CCDC43-204ENST00000588687 IGKV3OR2-268A0A0C4DH90 116 aa11.47□□□□□ -0.57
CCDC43-204ENST00000588687 FOXI1Q12951 378 aa11.47□□□□□ -0.57
CCDC43-204ENST00000588687 GTSF1Q8WW33 167 aa11.47□□□□□ -0.57
CCDC43-204ENST00000588687 GNG4P50150 75 aa11.46□□□□□ -0.57
CCDC43-204ENST00000588687 XKRY2A2RUG3 117 aa11.45□□□□□ -0.58
CCDC43-204ENST00000588687 IFNA1P01562 189 aa11.45□□□□□ -0.58
CCDC43-204ENST00000588687 RPL39LQ96EH5 51 aaKnown RBP11.45□□□□□ -0.58
CCDC43-204ENST00000588687 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.44□□□□□ -0.58
CCDC43-204ENST00000588687 KANTRA0A1W2PQU2 76 aa11.44□□□□□ -0.58
CCDC43-204ENST00000588687 IGKV2-29A2NJV5 120 aaPredicted RBP11.44□□□□□ -0.58
CCDC43-204ENST00000588687 RGS21Q2M5E4 152 aa11.44□□□□□ -0.58
CCDC43-204ENST00000588687 LYPD6BQ8NI32 183 aa11.44□□□□□ -0.58
CCDC43-204ENST00000588687 NCR2O95944 276 aa11.43□□□□□ -0.58
CCDC43-204ENST00000588687 MEF2BQ02080 365 aaPredicted RBP11.43□□□□□ -0.58
CCDC43-204ENST00000588687 SRSF9Q13242 221 aaKnown RBP eCLIP11.43□□□□□ -0.58
CCDC43-204ENST00000588687 SPINK6Q6UWN8 80 aa11.43□□□□□ -0.58
CCDC43-204ENST00000588687 H7C423 109 aa11.42□□□□□ -0.58
CCDC43-204ENST00000588687 FGF6P10767 208 aa11.42□□□□□ -0.58
CCDC43-204ENST00000588687 NUDT10Q8NFP7 164 aa11.42□□□□□ -0.58
CCDC43-204ENST00000588687 NUDT11Q96G61 164 aa11.42□□□□□ -0.58
CCDC43-204ENST00000588687 PDE6DO43924 150 aa11.41□□□□□ -0.58
CCDC43-204ENST00000588687 TWIST1Q15672 202 aa11.41□□□□□ -0.58
CCDC43-204ENST00000588687 FAM231BA6NCW3 169 aa11.4□□□□□ -0.58
CCDC43-204ENST00000588687 K7EN84 100 aa11.4□□□□□ -0.58
CCDC43-204ENST00000588687 APCSP02743 223 aa11.4□□□□□ -0.58
CCDC43-204ENST00000588687 FOXA3P55318 350 aaPredicted RBP11.4□□□□□ -0.58
CCDC43-204ENST00000588687 EIF5AP63241 154 aaKnown RBP11.4□□□□□ -0.58
CCDC43-204ENST00000588687 AMMECR1LQ6DCA0 310 aa11.4□□□□□ -0.58
CCDC43-204ENST00000588687 OR5A1Q8NGJ0 315 aa11.4□□□□□ -0.58
CCDC43-204ENST00000588687 LINC00526Q96FQ7 95 aa11.4□□□□□ -0.58
CCDC43-204ENST00000588687 SDHAF1A6NFY7 115 aa11.39□□□□□ -0.59
CCDC43-204ENST00000588687 ZNF25P17030 456 aaPredicted RBP11.39□□□□□ -0.59
CCDC43-204ENST00000588687 RNASEKQ6P5S7 137 aaKnown RBP11.39□□□□□ -0.59
CCDC43-204ENST00000588687 RPP21Q9H633 154 aaKnown RBP11.39□□□□□ -0.59
CCDC43-204ENST00000588687 LINC00474Q9P2X8 69 aa11.39□□□□□ -0.59
CCDC43-204ENST00000588687 BCL2P10415 239 aa11.38□□□□□ -0.59
CCDC43-204ENST00000588687 XCL1P47992 114 aa11.38□□□□□ -0.59
CCDC43-204ENST00000588687 REG3GQ6UW15 175 aa11.38□□□□□ -0.59
CCDC43-204ENST00000588687 CARD19Q96LW7 228 aa11.38□□□□□ -0.59
CCDC43-204ENST00000588687 RNASE7Q9H1E1 156 aaKnown RBP11.38□□□□□ -0.59
CCDC43-204ENST00000588687 BIN3Q9NQY0 253 aa11.38□□□□□ -0.59
CCDC43-204ENST00000588687 MED9Q9NWA0 146 aa11.38□□□□□ -0.59
CCDC43-204ENST00000588687 LINC00959A0A1B0GUT2 108 aa11.37□□□□□ -0.59
CCDC43-204ENST00000588687 CCL25O15444 150 aa11.37□□□□□ -0.59
CCDC43-204ENST00000588687 ESDP10768 282 aa11.37□□□□□ -0.59
CCDC43-204ENST00000588687 IGHV1-58A0A0C4DH39 117 aa11.36□□□□□ -0.59
CCDC43-204ENST00000588687 TRBV6-5A0A0K0K1A5 114 aa11.36□□□□□ -0.59
CCDC43-204ENST00000588687 Q6ZRP5 223 aa11.36□□□□□ -0.59
CCDC43-204ENST00000588687 GAS8-AS1O95177 125 aa11.35□□□□□ -0.59
CCDC43-204ENST00000588687 TSHBP01222 138 aa11.35□□□□□ -0.59
CCDC43-204ENST00000588687 PKIGQ9Y2B9 76 aa11.35□□□□□ -0.59
CCDC43-204ENST00000588687 TEX46H3BTG2 121 aa11.33□□□□□ -0.6
CCDC43-204ENST00000588687 PTTG1IPP53801 180 aa11.33□□□□□ -0.6
CCDC43-204ENST00000588687 TEX261Q6UWH6 196 aa11.33□□□□□ -0.6
CCDC43-204ENST00000588687 OCC1Q8TAD7 63 aa11.33□□□□□ -0.6
CCDC43-204ENST00000588687 I3L3M4 83 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms