RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 XKRY2A2RUG3 117 aa6.72□□□□□ -1.33
RFFL-209ENST00000581265 TRGC1P0CF51 173 aa6.72□□□□□ -1.33
RFFL-209ENST00000581265 NTF3P20783 257 aa6.72□□□□□ -1.33
RFFL-209ENST00000581265 RAB5CP51148 216 aa6.72□□□□□ -1.33
RFFL-209ENST00000581265 WDR73Q6P4I2 378 aa6.72□□□□□ -1.33
RFFL-209ENST00000581265 SPACA4Q8TDM5 124 aa6.72□□□□□ -1.33
RFFL-209ENST00000581265 PLAC8Q9NZF1 115 aa6.72□□□□□ -1.33
RFFL-209ENST00000581265 RAB19A4D1S5 217 aa6.71□□□□□ -1.34
RFFL-209ENST00000581265 IFNA1P01562 189 aa6.71□□□□□ -1.34
RFFL-209ENST00000581265 CHTF8P0CG12 524 aa6.71□□□□□ -1.34
RFFL-209ENST00000581265 GNG4P50150 75 aa6.71□□□□□ -1.34
RFFL-209ENST00000581265 COTL1Q14019 142 aa6.71□□□□□ -1.34
RFFL-209ENST00000581265 LYZL1Q6UWQ5 148 aa6.71□□□□□ -1.34
RFFL-209ENST00000581265 KRTAP9-2Q9BYQ4 174 aa6.71□□□□□ -1.34
RFFL-209ENST00000581265 DPH3P1Q9H4G8 78 aa6.71□□□□□ -1.34
RFFL-209ENST00000581265 TRBV20OR9-2A0A075B6H5 130 aa6.7□□□□□ -1.34
RFFL-209ENST00000581265 UBE2L6O14933 153 aa6.7□□□□□ -1.34
RFFL-209ENST00000581265 AMTP48728 403 aa6.7□□□□□ -1.34
RFFL-209ENST00000581265 SULT1A2P50226 295 aa6.7□□□□□ -1.34
RFFL-209ENST00000581265 CFAP161Q6P656 301 aa6.7□□□□□ -1.34
RFFL-209ENST00000581265 C15orf56Q8N910 161 aa6.7□□□□□ -1.34
RFFL-209ENST00000581265 BIN3Q9NQY0 253 aa6.7□□□□□ -1.34
RFFL-209ENST00000581265 TEX46H3BTG2 121 aa6.69□□□□□ -1.34
RFFL-209ENST00000581265 PDE6DO43924 150 aa6.69□□□□□ -1.34
RFFL-209ENST00000581265 GAS8-AS1O95177 125 aa6.69□□□□□ -1.34
RFFL-209ENST00000581265 RPS10P46783 165 aaKnown RBP6.69□□□□□ -1.34
RFFL-209ENST00000581265 MEF2BQ02080 365 aaPredicted RBP6.69□□□□□ -1.34
RFFL-209ENST00000581265 NUDT10Q8NFP7 164 aa6.69□□□□□ -1.34
RFFL-209ENST00000581265 NUDT11Q96G61 164 aa6.69□□□□□ -1.34
RFFL-209ENST00000581265 CNFNQ9BYD5 112 aa6.69□□□□□ -1.34
RFFL-209ENST00000581265 GAGE12HA6NDE8 117 aa6.68□□□□□ -1.34
RFFL-209ENST00000581265 CTRLP40313 264 aa6.68□□□□□ -1.34
RFFL-209ENST00000581265 COX6A2Q02221 97 aa6.68□□□□□ -1.34
RFFL-209ENST00000581265 EIF5AL1Q6IS14 154 aaKnown RBP6.68□□□□□ -1.34
RFFL-209ENST00000581265 GATD1Q8NB37 220 aa6.68□□□□□ -1.34
RFFL-209ENST00000581265 MED9Q9NWA0 146 aa6.68□□□□□ -1.34
RFFL-209ENST00000581265 H7C423 109 aa6.67□□□□□ -1.34
RFFL-209ENST00000581265 PHOX2AO14813 284 aa6.67□□□□□ -1.34
RFFL-209ENST00000581265 NDUFS6O75380 124 aaKnown RBP6.67□□□□□ -1.34
RFFL-209ENST00000581265 TWIST1Q15672 202 aa6.67□□□□□ -1.34
RFFL-209ENST00000581265 PRSS3P2Q8NHM4 247 aa6.67□□□□□ -1.34
RFFL-209ENST00000581265 C7orf33Q8WU49 177 aa6.67□□□□□ -1.34
RFFL-209ENST00000581265 GVQW2A0A096LPI5 108 aaPredicted RBP6.66□□□□□ -1.34
RFFL-209ENST00000581265 KRTAP9-6A0A140TA67 174 aa6.66□□□□□ -1.34
RFFL-209ENST00000581265 NCR2O95944 276 aa6.66□□□□□ -1.34
RFFL-209ENST00000581265 CHCHD10Q8WYQ3 142 aaPredicted RBP6.66□□□□□ -1.34
RFFL-209ENST00000581265 LINC01600Q96MT4 127 aa6.66□□□□□ -1.34
RFFL-209ENST00000581265 TRAV26-2A0A0B4J265 109 aa6.65□□□□□ -1.34
RFFL-209ENST00000581265 IGKV3OR2-268A0A0C4DH90 116 aa6.65□□□□□ -1.34
RFFL-209ENST00000581265 BCL2P10415 239 aa6.65□□□□□ -1.34
RFFL-209ENST00000581265 MAJINQ3KP22 176 aa6.65□□□□□ -1.34
RFFL-209ENST00000581265 HIGD2BQ4VC39 106 aa6.65□□□□□ -1.34
RFFL-209ENST00000581265 LCE2DQ5TA82 110 aaPredicted RBP6.65□□□□□ -1.34
RFFL-209ENST00000581265 AMMECR1LQ6DCA0 310 aa6.65□□□□□ -1.34
RFFL-209ENST00000581265 TEX261Q6UWH6 196 aa6.65□□□□□ -1.34
RFFL-209ENST00000581265 Q6ZNX1 250 aa6.65□□□□□ -1.34
RFFL-209ENST00000581265 GTSF1Q8WW33 167 aa6.65□□□□□ -1.34
RFFL-209ENST00000581265 RPP21Q9H633 154 aaKnown RBP6.65□□□□□ -1.34
RFFL-209ENST00000581265 IGKV2-24A0A0C4DH68 120 aa6.64□□□□□ -1.35
RFFL-209ENST00000581265 FGF6P10767 208 aa6.64□□□□□ -1.35
RFFL-209ENST00000581265 TAGLN2P37802 199 aaKnown RBP6.64□□□□□ -1.35
RFFL-209ENST00000581265 PRR3P79522 188 aaKnown RBP6.64□□□□□ -1.35
RFFL-209ENST00000581265 FOXI1Q12951 378 aa6.64□□□□□ -1.35
RFFL-209ENST00000581265 RNASEKQ6P5S7 137 aaKnown RBP6.64□□□□□ -1.35
RFFL-209ENST00000581265 STPG4Q8N801 248 aa6.64□□□□□ -1.35
RFFL-209ENST00000581265 OCC1Q8TAD7 63 aa6.64□□□□□ -1.35
RFFL-209ENST00000581265 RPL39LQ96EH5 51 aaKnown RBP6.64□□□□□ -1.35
RFFL-209ENST00000581265 LRP2P98164 4655 aa6.64□□□□□ -1.35
RFFL-209ENST00000581265 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.63□□□□□ -1.35
RFFL-209ENST00000581265 IGKV2-29A2NJV5 120 aaPredicted RBP6.63□□□□□ -1.35
RFFL-209ENST00000581265 FAM231BA6NCW3 169 aa6.63□□□□□ -1.35
RFFL-209ENST00000581265 SDHAF1A6NFY7 115 aa6.63□□□□□ -1.35
RFFL-209ENST00000581265 K7EN84 100 aa6.63□□□□□ -1.35
RFFL-209ENST00000581265 APCSP02743 223 aa6.63□□□□□ -1.35
RFFL-209ENST00000581265 ZNF25P17030 456 aaPredicted RBP6.63□□□□□ -1.35
RFFL-209ENST00000581265 FOXA3P55318 350 aaPredicted RBP6.63□□□□□ -1.35
RFFL-209ENST00000581265 SMIM15Q7Z3B0 74 aa6.63□□□□□ -1.35
RFFL-209ENST00000581265 OR5A1Q8NGJ0 315 aa6.63□□□□□ -1.35
RFFL-209ENST00000581265 RNASE7Q9H1E1 156 aaKnown RBP6.63□□□□□ -1.35
RFFL-209ENST00000581265 LINC00474Q9P2X8 69 aa6.63□□□□□ -1.35
RFFL-209ENST00000581265 A0A096LNI7 61 aa6.62□□□□□ -1.35
RFFL-209ENST00000581265 TRBV6-5A0A0K0K1A5 114 aa6.62□□□□□ -1.35
RFFL-209ENST00000581265 I3L3M4 83 aa6.62□□□□□ -1.35
RFFL-209ENST00000581265 LYPD6BQ8NI32 183 aa6.62□□□□□ -1.35
RFFL-209ENST00000581265 FAM210AQ96ND0 272 aa6.62□□□□□ -1.35
RFFL-209ENST00000581265 TNXBP22105 4242 aa6.62□□□□□ -1.35
RFFL-209ENST00000581265 A0A0J9YXV3 536 aa6.61□□□□□ -1.35
RFFL-209ENST00000581265 LINC00959A0A1B0GUT2 108 aa6.61□□□□□ -1.35
RFFL-209ENST00000581265 ESDP10768 282 aa6.61□□□□□ -1.35
RFFL-209ENST00000581265 PMCHP20382 165 aa6.61□□□□□ -1.35
RFFL-209ENST00000581265 XCL1P47992 114 aa6.61□□□□□ -1.35
RFFL-209ENST00000581265 KRTAP10-8P60410 259 aa6.61□□□□□ -1.35
RFFL-209ENST00000581265 SPINK6Q6UWN8 80 aa6.61□□□□□ -1.35
RFFL-209ENST00000581265 BTF3L4Q96K17 158 aa6.61□□□□□ -1.35
RFFL-209ENST00000581265 PKIGQ9Y2B9 76 aa6.61□□□□□ -1.35
RFFL-209ENST00000581265 IGHV1-58A0A0C4DH39 117 aa6.6□□□□□ -1.35
RFFL-209ENST00000581265 A8MWL6 223 aa6.6□□□□□ -1.35
RFFL-209ENST00000581265 SRSF9Q13242 221 aaKnown RBP eCLIP6.6□□□□□ -1.35
RFFL-209ENST00000581265 FAM231DQ6ZW35 169 aa6.6□□□□□ -1.35
RFFL-209ENST00000581265 SLC51BQ86UW2 128 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms