RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 AP5S1Q9NUS5 200 aa10.76□□□□□ -0.69
SS18-216ENST00000580751 TMA7Q9Y2S6 64 aaKnown RBP10.76□□□□□ -0.69
SS18-216ENST00000580751 C5orf52A6NGY3 159 aa10.75□□□□□ -0.69
SS18-216ENST00000580751 LINC01549A6NIU2 74 aa10.75□□□□□ -0.69
SS18-216ENST00000580751 I3L3M4 83 aa10.75□□□□□ -0.69
SS18-216ENST00000580751 NEGR1Q7Z3B1 354 aa10.75□□□□□ -0.69
SS18-216ENST00000580751 LOC100131303A0A0U1RQF7 123 aa10.74□□□□□ -0.69
SS18-216ENST00000580751 IFI27P40305 119 aaPredicted RBP10.74□□□□□ -0.69
SS18-216ENST00000580751 TMEM97Q5BJF2 176 aa10.74□□□□□ -0.69
SS18-216ENST00000580751 DNAH1Q9P2D7 4330 aa10.74□□□□□ -0.69
SS18-216ENST00000580751 LOC389332A0A1B0GUA5 103 aa10.73□□□□□ -0.69
SS18-216ENST00000580751 HSBP1O75506 76 aa10.73□□□□□ -0.69
SS18-216ENST00000580751 SERF1AO75920 110 aa10.73□□□□□ -0.69
SS18-216ENST00000580751 UBE2D3P61077 147 aa10.73□□□□□ -0.69
SS18-216ENST00000580751 UBE2D2P62837 147 aa10.73□□□□□ -0.69
SS18-216ENST00000580751 IQCJQ1A5X6 159 aa10.73□□□□□ -0.69
SS18-216ENST00000580751 ORMDL2Q53FV1 153 aa10.73□□□□□ -0.69
SS18-216ENST00000580751 SACSQ9NZJ4 4579 aa10.73□□□□□ -0.69
SS18-216ENST00000580751 LINC00694P0DN24 101 aa10.72□□□□□ -0.69
SS18-216ENST00000580751 RNASEKQ6P5S7 137 aaKnown RBP10.72□□□□□ -0.69
SS18-216ENST00000580751 ZNRF2Q8NHG8 242 aa10.72□□□□□ -0.69
SS18-216ENST00000580751 URB1-AS1Q96HZ7 61 aa10.72□□□□□ -0.69
SS18-216ENST00000580751 GAGE12JA6NER3 117 aa10.71□□□□□ -0.69
SS18-216ENST00000580751 LINC00310P59036 64 aa10.71□□□□□ -0.69
SS18-216ENST00000580751 GAGE1Q13065 139 aa10.71□□□□□ -0.69
SS18-216ENST00000580751 GAGE4Q13068 117 aa10.71□□□□□ -0.69
SS18-216ENST00000580751 GAGE5Q13069 117 aa10.71□□□□□ -0.69
SS18-216ENST00000580751 LAGE3Q14657 143 aa10.71□□□□□ -0.69
SS18-216ENST00000580751 ESRGQ1W209 222 aa10.71□□□□□ -0.69
SS18-216ENST00000580751 GAGE13Q4V321 117 aa10.71□□□□□ -0.69
SS18-216ENST00000580751 VPS13DQ5THJ4 4388 aa10.71□□□□□ -0.69
SS18-216ENST00000580751 LINC00588Q9Y4M8 146 aa10.71□□□□□ -0.69
SS18-216ENST00000580751 SNRPEP62304 92 aaKnown RBP10.7□□□□□ -0.7
SS18-216ENST00000580751 LYPD5Q6UWN5 251 aa10.7□□□□□ -0.7
SS18-216ENST00000580751 ATP6V0E2Q8NHE4 81 aa10.7□□□□□ -0.7
SS18-216ENST00000580751 GTSF1LQ9H1H1 148 aa10.7□□□□□ -0.7
SS18-216ENST00000580751 MRPS16Q9Y3D3 137 aaKnown RBP10.7□□□□□ -0.7
SS18-216ENST00000580751 S100A2P29034 98 aa10.69□□□□□ -0.7
SS18-216ENST00000580751 FCER1GP30273 86 aa10.69□□□□□ -0.7
SS18-216ENST00000580751 TIRAPP58753 221 aa10.69□□□□□ -0.7
SS18-216ENST00000580751 COTL1Q14019 142 aa10.69□□□□□ -0.7
SS18-216ENST00000580751 HIST3H2BBQ8N257 126 aa10.69□□□□□ -0.7
SS18-216ENST00000580751 TMEM18Q96B42 140 aa10.69□□□□□ -0.7
SS18-216ENST00000580751 UPK3BQ9BT76 320 aa10.69□□□□□ -0.7
SS18-216ENST00000580751 Q9UF83 564 aa10.68□□□□□ -0.7
SS18-216ENST00000580751 TSHBP01222 138 aa10.67□□□□□ -0.7
SS18-216ENST00000580751 HBDP02042 147 aa10.67□□□□□ -0.7
SS18-216ENST00000580751 RYR2Q92736 4967 aa10.66□□□□□ -0.7
SS18-216ENST00000580751 IGHV1-24A0A0C4DH33 117 aa10.66□□□□□ -0.7
SS18-216ENST00000580751 NUPR1O60356 82 aa10.66□□□□□ -0.7
SS18-216ENST00000580751 AMTP48728 403 aa10.66□□□□□ -0.7
SS18-216ENST00000580751 SMAGPQ0VAQ4 97 aa10.66□□□□□ -0.7
SS18-216ENST00000580751 H7C423 109 aa10.65□□□□□ -0.7
SS18-216ENST00000580751 NPSP0C0P6 89 aa10.65□□□□□ -0.7
SS18-216ENST00000580751 HSPB8Q9UJY1 196 aa10.65□□□□□ -0.7
SS18-216ENST00000580751 LELP1Q5T871 98 aa10.64□□□□□ -0.71
SS18-216ENST00000580751 C20orf203Q8NBC4 194 aa10.64□□□□□ -0.71
SS18-216ENST00000580751 HIST1H2BLQ99880 126 aa10.64□□□□□ -0.71
SS18-216ENST00000580751 Q9H8V8 135 aa10.64□□□□□ -0.71
SS18-216ENST00000580751 CYSLTR1Q9Y271 337 aa10.64□□□□□ -0.71
SS18-216ENST00000580751 TRBV25-1A0A075B6N4 114 aa10.63□□□□□ -0.71
SS18-216ENST00000580751 TRBV6-8A0A0A6YYG3 113 aa10.63□□□□□ -0.71
SS18-216ENST00000580751 TRAV8-6A0A0B4J262 113 aa10.63□□□□□ -0.71
SS18-216ENST00000580751 PDZD11Q5EBL8 140 aa10.63□□□□□ -0.71
SS18-216ENST00000580751 TOMM6Q96B49 74 aa10.63□□□□□ -0.71
SS18-216ENST00000580751 RYR3Q15413 4870 aa10.63□□□□□ -0.71
SS18-216ENST00000580751 A0A096LNJ9 63 aa10.62□□□□□ -0.71
SS18-216ENST00000580751 SIVA1O15304 175 aa10.62□□□□□ -0.71
SS18-216ENST00000580751 ATP5LO75964 103 aa10.62□□□□□ -0.71
SS18-216ENST00000580751 LEPROTL1O95214 131 aa10.62□□□□□ -0.71
SS18-216ENST00000580751 PKIAP61925 76 aa10.62□□□□□ -0.71
SS18-216ENST00000580751 IGHV3-38A0A0C4DH36 116 aa10.61□□□□□ -0.71
SS18-216ENST00000580751 BTF3P20290 206 aaKnown RBP10.61□□□□□ -0.71
SS18-216ENST00000580751 TTC32Q5I0X7 151 aa10.61□□□□□ -0.71
SS18-216ENST00000580751 C2orf66Q6UXQ4 117 aa10.61□□□□□ -0.71
SS18-216ENST00000580751 ERASQ7Z444 233 aa10.61□□□□□ -0.71
SS18-216ENST00000580751 FAM19A2Q8N3H0 131 aa10.61□□□□□ -0.71
SS18-216ENST00000580751 CHCHD7Q9BUK0 85 aa10.61□□□□□ -0.71
SS18-216ENST00000580751 TIMM21Q9BVV7 248 aa10.61□□□□□ -0.71
SS18-216ENST00000580751 PYGO1Q9Y3Y4 419 aa10.61□□□□□ -0.71
SS18-216ENST00000580751 KMT2AQ03164 3969 aa10.6□□□□□ -0.71
SS18-216ENST00000580751 IFITM10A6NMD0 228 aa10.6□□□□□ -0.71
SS18-216ENST00000580751 FABP4P15090 132 aa10.6□□□□□ -0.71
SS18-216ENST00000580751 PAPPA-AS1Q5QFB9 102 aa10.6□□□□□ -0.71
SS18-216ENST00000580751 NTM-AS1Q6ZSK4 140 aa10.6□□□□□ -0.71
SS18-216ENST00000580751 WFDC10BQ8IUB3 73 aa10.6□□□□□ -0.71
SS18-216ENST00000580751 TMEM141Q96I45 108 aa10.6□□□□□ -0.71
SS18-216ENST00000580751 TIMM17AQ99595 171 aa10.6□□□□□ -0.71
SS18-216ENST00000580751 TMEM243Q9BU79 118 aa10.6□□□□□ -0.71
SS18-216ENST00000580751 CSDC2Q9Y534 153 aaKnown RBP10.6□□□□□ -0.71
SS18-216ENST00000580751 DNAH6Q9C0G6 4158 aa10.59□□□□□ -0.71
SS18-216ENST00000580751 NBDYA0A0U1RRE5 68 aa10.59□□□□□ -0.71
SS18-216ENST00000580751 MRPL52Q86TS9 123 aaKnown RBP10.59□□□□□ -0.71
SS18-216ENST00000580751 SPANXA1Q9NS26 97 aa10.59□□□□□ -0.71
SS18-216ENST00000580751 HYDINQ4G0P3 5121 aa10.58□□□□□ -0.72
SS18-216ENST00000580751 K7EP13 123 aa10.58□□□□□ -0.72
SS18-216ENST00000580751 DNAH10OSP0CZ25 163 aa10.58□□□□□ -0.72
SS18-216ENST00000580751 ZNF25P17030 456 aaPredicted RBP10.58□□□□□ -0.72
SS18-216ENST00000580751 PMCHL1Q16048 86 aa10.58□□□□□ -0.72
SS18-216ENST00000580751 TRAV9-2A0A087WT02 112 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms