RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 NUDT10Q8NFP7 164 aa8.85□□□□□ -0.99
CCDC40-216ENST00000576241 NUDT11Q96G61 164 aa8.85□□□□□ -0.99
CCDC40-216ENST00000576241 A0A1B0GUV1 79 aa8.84□□□□□ -0.99
CCDC40-216ENST00000576241 AMTP48728 403 aa8.84□□□□□ -0.99
CCDC40-216ENST00000576241 COTL1Q14019 142 aa8.84□□□□□ -0.99
CCDC40-216ENST00000576241 C20orf203Q8NBC4 194 aa8.84□□□□□ -0.99
CCDC40-216ENST00000576241 RPP21Q9H633 154 aaKnown RBP8.84□□□□□ -0.99
CCDC40-216ENST00000576241 FAT3Q8TDW7 4589 aa8.84□□□□□ -0.99
CCDC40-216ENST00000576241 IGLV4-60A0A075B6I1 120 aa8.83□□□□□ -1
CCDC40-216ENST00000576241 KRTAP10-4P60372 401 aaPredicted RBP8.83□□□□□ -1
CCDC40-216ENST00000576241 RPL37AP61513 92 aaKnown RBP8.83□□□□□ -1
CCDC40-216ENST00000576241 hDV102S1A0JD36 115 aa8.82□□□□□ -1
CCDC40-216ENST00000576241 LRP2P98164 4655 aa8.82□□□□□ -1
CCDC40-216ENST00000576241 SMIM15Q7Z3B0 74 aa8.82□□□□□ -1
CCDC40-216ENST00000576241 CNFNQ9BYD5 112 aa8.82□□□□□ -1
CCDC40-216ENST00000576241 RNASE7Q9H1E1 156 aaKnown RBP8.82□□□□□ -1
CCDC40-216ENST00000576241 AP5S1Q9NUS5 200 aa8.82□□□□□ -1
CCDC40-216ENST00000576241 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.81□□□□□ -1
CCDC40-216ENST00000576241 OXTP01178 125 aa8.81□□□□□ -1
CCDC40-216ENST00000576241 CNBPP62633 177 aaKnown RBP8.81□□□□□ -1
CCDC40-216ENST00000576241 K7EN84 100 aa8.8□□□□□ -1
CCDC40-216ENST00000576241 SDIM1Q6ZPB5 146 aa8.8□□□□□ -1
CCDC40-216ENST00000576241 GATD1Q8NB37 220 aa8.8□□□□□ -1
CCDC40-216ENST00000576241 OCC1Q8TAD7 63 aa8.8□□□□□ -1
CCDC40-216ENST00000576241 GFRA4Q9GZZ7 299 aa8.8□□□□□ -1
CCDC40-216ENST00000576241 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.8□□□□□ -1
CCDC40-216ENST00000576241 IGHV3-64A0A075B6Q5 118 aa8.79□□□□□ -1
CCDC40-216ENST00000576241 TRAV26-2A0A0B4J265 109 aa8.79□□□□□ -1
CCDC40-216ENST00000576241 AMMECR1LQ6DCA0 310 aa8.79□□□□□ -1
CCDC40-216ENST00000576241 TMEM250H0YL14 139 aa8.78□□□□□ -1
CCDC40-216ENST00000576241 TEX261Q6UWH6 196 aa8.78□□□□□ -1
CCDC40-216ENST00000576241 DPH3Q96FX2 82 aa8.78□□□□□ -1
CCDC40-216ENST00000576241 IGKV3OR2-268A0A0C4DH90 116 aa8.77□□□□□ -1.01
CCDC40-216ENST00000576241 PANO1I0J062 215 aa8.77□□□□□ -1.01
CCDC40-216ENST00000576241 GATCO43716 136 aaKnown RBP8.77□□□□□ -1.01
CCDC40-216ENST00000576241 NCR2O95944 276 aa8.77□□□□□ -1.01
CCDC40-216ENST00000576241 BLOC1S1P78537 153 aa8.77□□□□□ -1.01
CCDC40-216ENST00000576241 CFAP161Q6P656 301 aa8.77□□□□□ -1.01
CCDC40-216ENST00000576241 AKAP14Q86UN6 197 aa8.77□□□□□ -1.01
CCDC40-216ENST00000576241 GTSF1Q8WW33 167 aa8.77□□□□□ -1.01
CCDC40-216ENST00000576241 GAGE12HA6NDE8 117 aa8.76□□□□□ -1.01
CCDC40-216ENST00000576241 A8MWL6 223 aa8.76□□□□□ -1.01
CCDC40-216ENST00000576241 APCSP02743 223 aa8.76□□□□□ -1.01
CCDC40-216ENST00000576241 CEBPGP53567 150 aa8.76□□□□□ -1.01
CCDC40-216ENST00000576241 RNASEKQ6P5S7 137 aaKnown RBP8.76□□□□□ -1.01
CCDC40-216ENST00000576241 ALKAL2Q6UX46 152 aa8.76□□□□□ -1.01
CCDC40-216ENST00000576241 BORCS7Q96B45 105 aa8.76□□□□□ -1.01
CCDC40-216ENST00000576241 RPL39LQ96EH5 51 aaKnown RBP8.76□□□□□ -1.01
CCDC40-216ENST00000576241 KRTAP9-2Q9BYQ4 174 aa8.76□□□□□ -1.01
CCDC40-216ENST00000576241 SDHAF1A6NFY7 115 aa8.75□□□□□ -1.01
CCDC40-216ENST00000576241 H7C423 109 aa8.75□□□□□ -1.01
CCDC40-216ENST00000576241 CIRBPQ14011 172 aaKnown RBP8.75□□□□□ -1.01
CCDC40-216ENST00000576241 Q6ZNX1 250 aa8.75□□□□□ -1.01
CCDC40-216ENST00000576241 RNF185Q96GF1 192 aa8.75□□□□□ -1.01
CCDC40-216ENST00000576241 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.74□□□□□ -1.01
CCDC40-216ENST00000576241 IGKV2-29A2NJV5 120 aaPredicted RBP8.74□□□□□ -1.01
CCDC40-216ENST00000576241 PMCHP20382 165 aa8.74□□□□□ -1.01
CCDC40-216ENST00000576241 FOXA3P55318 350 aaPredicted RBP8.74□□□□□ -1.01
CCDC40-216ENST00000576241 FAM231DQ6ZW35 169 aa8.74□□□□□ -1.01
CCDC40-216ENST00000576241 SLPIP03973 132 aa8.73□□□□□ -1.01
CCDC40-216ENST00000576241 FGF6P10767 208 aa8.73□□□□□ -1.01
CCDC40-216ENST00000576241 CT83Q5H943 113 aa8.73□□□□□ -1.01
CCDC40-216ENST00000576241 C15orf56Q8N910 161 aa8.73□□□□□ -1.01
CCDC40-216ENST00000576241 CHCHD10Q8WYQ3 142 aaPredicted RBP8.73□□□□□ -1.01
CCDC40-216ENST00000576241 BTF3L4Q96K17 158 aa8.73□□□□□ -1.01
CCDC40-216ENST00000576241 I3L3M4 83 aa8.72□□□□□ -1.01
CCDC40-216ENST00000576241 CHTF8P0CG12 524 aa8.72□□□□□ -1.01
CCDC40-216ENST00000576241 ZNF25P17030 456 aaPredicted RBP8.72□□□□□ -1.01
CCDC40-216ENST00000576241 RPS10P46783 165 aaKnown RBP8.72□□□□□ -1.01
CCDC40-216ENST00000576241 HNRNPA3P51991 378 aaKnown RBP8.72□□□□□ -1.01
CCDC40-216ENST00000576241 HIGD2BQ4VC39 106 aa8.72□□□□□ -1.01
CCDC40-216ENST00000576241 SPACA4Q8TDM5 124 aa8.72□□□□□ -1.01
CCDC40-216ENST00000576241 TMEM101Q96IK0 257 aa8.72□□□□□ -1.01
CCDC40-216ENST00000576241 SMIM7Q9BQ49 75 aa8.72□□□□□ -1.01
CCDC40-216ENST00000576241 EIF5A2Q9GZV4 153 aaKnown RBP8.72□□□□□ -1.01
CCDC40-216ENST00000576241 PKHD1L1Q86WI1 4243 aa8.72□□□□□ -1.01
CCDC40-216ENST00000576241 hCG_2014768A0A024R1R8 64 aa8.71□□□□□ -1.02
CCDC40-216ENST00000576241 A0A087WYN8 130 aa8.71□□□□□ -1.02
CCDC40-216ENST00000576241 TRBV6-5A0A0K0K1A5 114 aa8.71□□□□□ -1.02
CCDC40-216ENST00000576241 LYPD6BQ8NI32 183 aa8.71□□□□□ -1.02
CCDC40-216ENST00000576241 ST20Q9HBF5 79 aa8.71□□□□□ -1.02
CCDC40-216ENST00000576241 A0A1B0GUT8 65 aa8.7□□□□□ -1.02
CCDC40-216ENST00000576241 HIGD1CA8MV81 97 aa8.7□□□□□ -1.02
CCDC40-216ENST00000576241 OR5A1Q8NGJ0 315 aa8.7□□□□□ -1.02
CCDC40-216ENST00000576241 FAM210AQ96ND0 272 aa8.7□□□□□ -1.02
CCDC40-216ENST00000576241 GVQW2A0A096LPI5 108 aaPredicted RBP8.69□□□□□ -1.02
CCDC40-216ENST00000576241 KRTAP9-6A0A140TA67 174 aa8.69□□□□□ -1.02
CCDC40-216ENST00000576241 NDUFS6O75380 124 aaKnown RBP8.69□□□□□ -1.02
CCDC40-216ENST00000576241 XCL1P47992 114 aa8.69□□□□□ -1.02
CCDC40-216ENST00000576241 COX6A2Q02221 97 aa8.69□□□□□ -1.02
CCDC40-216ENST00000576241 LINC01551Q86U37 167 aa8.69□□□□□ -1.02
CCDC40-216ENST00000576241 C7orf33Q8WU49 177 aa8.69□□□□□ -1.02
CCDC40-216ENST00000576241 TSKUQ8WUA8 353 aa8.69□□□□□ -1.02
CCDC40-216ENST00000576241 MRAP2Q96G30 205 aa8.69□□□□□ -1.02
CCDC40-216ENST00000576241 PLAC8Q9NZF1 115 aa8.69□□□□□ -1.02
CCDC40-216ENST00000576241 FAM231BA6NCW3 169 aa8.68□□□□□ -1.02
CCDC40-216ENST00000576241 ZNF727A8MUV8 499 aa8.68□□□□□ -1.02
CCDC40-216ENST00000576241 TSHBP01222 138 aa8.68□□□□□ -1.02
CCDC40-216ENST00000576241 FOXI1Q12951 378 aa8.68□□□□□ -1.02
CCDC40-216ENST00000576241 Q6ZRU5 148 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms