RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 V9GYV3 84 aa13.3□□□□□ -0.28
NUP88-204ENST00000572290 ADIRFQ15847 76 aa13.29□□□□□ -0.28
NUP88-204ENST00000572290 DEFB104AQ8WTQ1 72 aa13.29□□□□□ -0.28
NUP88-204ENST00000572290 XGP55808 180 aa13.28□□□□□ -0.28
NUP88-204ENST00000572290 MIAQ16674 131 aa13.28□□□□□ -0.28
NUP88-204ENST00000572290 RPL39LQ96EH5 51 aaKnown RBP13.28□□□□□ -0.28
NUP88-204ENST00000572290 PRR34Q9NV39 138 aa13.28□□□□□ -0.28
NUP88-204ENST00000572290 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.27□□□□□ -0.29
NUP88-204ENST00000572290 AMTP48728 403 aa13.27□□□□□ -0.29
NUP88-204ENST00000572290 LINC00269Q8N2A0 174 aa13.27□□□□□ -0.29
NUP88-204ENST00000572290 DNAH8Q96JB1 4490 aa13.27□□□□□ -0.29
NUP88-204ENST00000572290 CLPSL2Q6UWE3 100 aa13.26□□□□□ -0.29
NUP88-204ENST00000572290 TMEM191AQ9H0A3 160 aa13.26□□□□□ -0.29
NUP88-204ENST00000572290 UBE2L6O14933 153 aa13.25□□□□□ -0.29
NUP88-204ENST00000572290 RIGQ13278 110 aa13.25□□□□□ -0.29
NUP88-204ENST00000572290 NUP35Q8NFH5 326 aa13.25□□□□□ -0.29
NUP88-204ENST00000572290 A0A1B0GUV1 79 aa13.24□□□□□ -0.29
NUP88-204ENST00000572290 C20orf203Q8NBC4 194 aa13.24□□□□□ -0.29
NUP88-204ENST00000572290 TMEM70Q9BUB7 260 aa13.24□□□□□ -0.29
NUP88-204ENST00000572290 NAT8BQ9UHF3 227 aa13.24□□□□□ -0.29
NUP88-204ENST00000572290 SDHAF1A6NFY7 115 aa13.23□□□□□ -0.29
NUP88-204ENST00000572290 NCR2O95944 276 aa13.23□□□□□ -0.29
NUP88-204ENST00000572290 REG3AQ06141 175 aa13.23□□□□□ -0.29
NUP88-204ENST00000572290 IGLV4-60A0A075B6I1 120 aa13.22□□□□□ -0.29
NUP88-204ENST00000572290 TRBV6-5A0A0K0K1A5 114 aa13.22□□□□□ -0.29
NUP88-204ENST00000572290 HLA-DQA1P01909 254 aa13.22□□□□□ -0.29
NUP88-204ENST00000572290 RAB4AP20338 218 aa13.22□□□□□ -0.29
NUP88-204ENST00000572290 RNF185Q96GF1 192 aa13.22□□□□□ -0.29
NUP88-204ENST00000572290 APCSP02743 223 aa13.21□□□□□ -0.29
NUP88-204ENST00000572290 RAB14P61106 215 aa13.21□□□□□ -0.29
NUP88-204ENST00000572290 C14orf177Q52M58 125 aa13.21□□□□□ -0.29
NUP88-204ENST00000572290 AMN1Q8IY45 258 aa13.21□□□□□ -0.29
NUP88-204ENST00000572290 MRAP2Q96G30 205 aa13.21□□□□□ -0.29
NUP88-204ENST00000572290 FAT1Q14517 4588 aa13.21□□□□□ -0.29
NUP88-204ENST00000572290 SMIM27A0A1W2PRY6 76 aa13.2□□□□□ -0.3
NUP88-204ENST00000572290 I3L3M4 83 aa13.2□□□□□ -0.3
NUP88-204ENST00000572290 GAS8-AS1O95177 125 aa13.2□□□□□ -0.3
NUP88-204ENST00000572290 PMCHP20382 165 aa13.2□□□□□ -0.3
NUP88-204ENST00000572290 ST20Q9HBF5 79 aa13.2□□□□□ -0.3
NUP88-204ENST00000572290 KRTAP26-1Q6PEX3 210 aa13.19□□□□□ -0.3
NUP88-204ENST00000572290 IGLV10-54A0A075B6I4 117 aa13.18□□□□□ -0.3
NUP88-204ENST00000572290 TRAV8-4A0A0B4J246 113 aa13.18□□□□□ -0.3
NUP88-204ENST00000572290 USP17L23D6RBM5 183 aa13.18□□□□□ -0.3
NUP88-204ENST00000572290 HAMPP81172 84 aa13.18□□□□□ -0.3
NUP88-204ENST00000572290 FAM30AQ9NZY2 134 aa13.18□□□□□ -0.3
NUP88-204ENST00000572290 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.17□□□□□ -0.3
NUP88-204ENST00000572290 IGKV2-29A2NJV5 120 aaPredicted RBP13.17□□□□□ -0.3
NUP88-204ENST00000572290 EPM2AB3EWF7 344 aa13.17□□□□□ -0.3
NUP88-204ENST00000572290 H7C423 109 aa13.17□□□□□ -0.3
NUP88-204ENST00000572290 RPS10P46783 165 aaKnown RBP13.17□□□□□ -0.3
NUP88-204ENST00000572290 AMMECR1LQ6DCA0 310 aa13.17□□□□□ -0.3
NUP88-204ENST00000572290 LINC01620Q4KN68 170 aa13.16□□□□□ -0.3
NUP88-204ENST00000572290 A0A1B0GW15 77 aa13.15□□□□□ -0.3
NUP88-204ENST00000572290 SMKR1H3BMG3 65 aa13.15□□□□□ -0.3
NUP88-204ENST00000572290 CAMPP49913 170 aa13.15□□□□□ -0.3
NUP88-204ENST00000572290 POLR2KP53803 58 aaKnown RBP13.15□□□□□ -0.3
NUP88-204ENST00000572290 RNASEKQ6P5S7 137 aaKnown RBP13.15□□□□□ -0.3
NUP88-204ENST00000572290 TMEM242Q9NWH2 141 aa13.15□□□□□ -0.3
NUP88-204ENST00000572290 PPP1R17O96001 155 aa13.14□□□□□ -0.31
NUP88-204ENST00000572290 TSHBP01222 138 aa13.14□□□□□ -0.31
NUP88-204ENST00000572290 SMR3BP02814 79 aaPredicted RBP13.14□□□□□ -0.31
NUP88-204ENST00000572290 FGF6P10767 208 aa13.14□□□□□ -0.31
NUP88-204ENST00000572290 FAM104BQ5XKR9 115 aa13.14□□□□□ -0.31
NUP88-204ENST00000572290 TRBV27A0A0K0K1C4 114 aa13.13□□□□□ -0.31
NUP88-204ENST00000572290 Q6ZSA8 131 aa13.13□□□□□ -0.31
NUP88-204ENST00000572290 PRSS1P07477 247 aa13.12□□□□□ -0.31
NUP88-204ENST00000572290 ESDP10768 282 aa13.12□□□□□ -0.31
NUP88-204ENST00000572290 MRPL51Q4U2R6 128 aaKnown RBP13.12□□□□□ -0.31
NUP88-204ENST00000572290 CLLU1Q5K131 121 aa13.12□□□□□ -0.31
NUP88-204ENST00000572290 Q5VSD8 79 aa13.12□□□□□ -0.31
NUP88-204ENST00000572290 NRACQ8N912 160 aa13.12□□□□□ -0.31
NUP88-204ENST00000572290 IGKV3OR2-268A0A0C4DH90 116 aa13.11□□□□□ -0.31
NUP88-204ENST00000572290 VCYO14598 125 aa13.11□□□□□ -0.31
NUP88-204ENST00000572290 S100A8P05109 93 aa13.11□□□□□ -0.31
NUP88-204ENST00000572290 ZNF25P17030 456 aaPredicted RBP13.11□□□□□ -0.31
NUP88-204ENST00000572290 MRPL54Q6P161 138 aaKnown RBP13.11□□□□□ -0.31
NUP88-204ENST00000572290 BTF3L4Q96K17 158 aa13.11□□□□□ -0.31
NUP88-204ENST00000572290 PPP1R2P9O14990 202 aa13.1□□□□□ -0.31
NUP88-204ENST00000572290 SUMO2P61956 95 aaKnown RBP13.1□□□□□ -0.31
NUP88-204ENST00000572290 HBBP68871 147 aa13.1□□□□□ -0.31
NUP88-204ENST00000572290 PNRC1Q12796 327 aaPredicted RBP13.1□□□□□ -0.31
NUP88-204ENST00000572290 CLRN3Q8NCR9 226 aa13.1□□□□□ -0.31
NUP88-204ENST00000572290 TMEM101Q96IK0 257 aa13.1□□□□□ -0.31
NUP88-204ENST00000572290 LINC00862A6NCI5 91 aa13.09□□□□□ -0.31
NUP88-204ENST00000572290 DGAT2L7PQ6IED9 249 aa13.09□□□□□ -0.31
NUP88-204ENST00000572290 A0A1B0GXF2 115 aa13.08□□□□□ -0.32
NUP88-204ENST00000572290 C7orf77A4D0Y5 90 aa13.08□□□□□ -0.32
NUP88-204ENST00000572290 F8W036 122 aa13.08□□□□□ -0.32
NUP88-204ENST00000572290 FAM229AH3BQW9 127 aa13.08□□□□□ -0.32
NUP88-204ENST00000572290 FCER1GP30273 86 aa13.08□□□□□ -0.32
NUP88-204ENST00000572290 CKS2P33552 79 aa13.08□□□□□ -0.32
NUP88-204ENST00000572290 GAGE12HA6NDE8 117 aa13.07□□□□□ -0.32
NUP88-204ENST00000572290 OR5A1Q8NGJ0 315 aa13.07□□□□□ -0.32
NUP88-204ENST00000572290 KIR2DL4Q99706 377 aa13.07□□□□□ -0.32
NUP88-204ENST00000572290 MRPL52Q86TS9 123 aaKnown RBP13.06□□□□□ -0.32
NUP88-204ENST00000572290 CHCHD10Q8WYQ3 142 aaPredicted RBP13.06□□□□□ -0.32
NUP88-204ENST00000572290 C20orf78Q9BR46 151 aa13.06□□□□□ -0.32
NUP88-204ENST00000572290 hDV102S1A0JD36 115 aa13.05□□□□□ -0.32
NUP88-204ENST00000572290 MT-ND4LP03901 98 aa13.05□□□□□ -0.32
NUP88-204ENST00000572290 IFITM2Q01629 132 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms