RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 SMIM2Q9BVW6 85 aa4.52□□□□□ -1.69
VPS53-209ENST00000570771 DEFB131BA0A096LNP1 70 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 SDHAF1A6NFY7 115 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 LINC01549A6NIU2 74 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 I3L3M4 83 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 HSBP1O75506 76 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 LINC00614P0C842 121 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 GYPEP15421 78 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 FCER1GP30273 86 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 NDUFA6P56556 154 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 MRPL23Q16540 153 aaKnown RBP4.51□□□□□ -1.69
VPS53-209ENST00000570771 ORMDL2Q53FV1 153 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 ZFAND6Q6FIF0 208 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 RNASEKQ6P5S7 137 aaKnown RBP4.51□□□□□ -1.69
VPS53-209ENST00000570771 Q6ZSN1 163 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 DAZ4Q86SG3 579 aaKnown RBP4.51□□□□□ -1.69
VPS53-209ENST00000570771 NEXN-AS1Q8NBZ9 246 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 ZNRF2Q8NHG8 242 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 CHCHD1Q96BP2 118 aaKnown RBP4.51□□□□□ -1.69
VPS53-209ENST00000570771 RPL39LQ96EH5 51 aaKnown RBP4.51□□□□□ -1.69
VPS53-209ENST00000570771 TMEM70Q9BUB7 260 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 DAZ3Q9NR90 486 aaKnown RBP4.51□□□□□ -1.69
VPS53-209ENST00000570771 AP5S1Q9NUS5 200 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 TMA7Q9Y2S6 64 aaKnown RBP4.51□□□□□ -1.69
VPS53-209ENST00000570771 ICOSQ9Y6W8 199 aa4.51□□□□□ -1.69
VPS53-209ENST00000570771 DNAH11Q96DT5 4516 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 FAT2Q9NYQ8 4349 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 TRAV26-1A0A087WT03 109 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 TRBV27A0A0K0K1C4 114 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 LOC389332A0A1B0GUA5 103 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 GAGE12JA6NER3 117 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 HOXA5P20719 270 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 POLR2KP53803 58 aaKnown RBP4.5□□□□□ -1.69
VPS53-209ENST00000570771 SMAGPQ0VAQ4 97 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 GAGE1Q13065 139 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 GAGE4Q13068 117 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 GAGE5Q13069 117 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 COTL1Q14019 142 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 GAGE13Q4V321 117 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 COA6Q5JTJ3 125 aaKnown RBP4.5□□□□□ -1.69
VPS53-209ENST00000570771 NIT1Q86X76 327 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 C15orf53Q8NAA6 179 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 TMEM18Q96B42 140 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 Q9UF83 564 aa4.5□□□□□ -1.69
VPS53-209ENST00000570771 A0A0J9YY99 117 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 SERF1AO75920 110 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 GAS8-AS1O95177 125 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 P0DMU3 169 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 FAM231AP0DMU4 169 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 FAM231CP0DMU5 169 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 S100A2P29034 98 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 IFI27P40305 119 aaPredicted RBP4.49□□□□□ -1.69
VPS53-209ENST00000570771 UBE2D3P61077 147 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 UBE2D2P62837 147 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 LAGE3Q14657 143 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 IQCJQ1A5X6 159 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 NEGR1Q7Z3B1 354 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 ATP6V0E2Q8NHE4 81 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 DNAH17Q9UFH2 4485 aa4.49□□□□□ -1.69
VPS53-209ENST00000570771 FRAS1Q86XX4 4008 aa4.48□□□□□ -1.69
VPS53-209ENST00000570771 IGLV2-18A0A075B6J9 118 aa4.48□□□□□ -1.69
VPS53-209ENST00000570771 NUPR2A6NF83 97 aa4.48□□□□□ -1.69
VPS53-209ENST00000570771 LINC01546A6NGU7 62 aa4.48□□□□□ -1.69
VPS53-209ENST00000570771 NUDT3O95989 172 aa4.48□□□□□ -1.69
VPS53-209ENST00000570771 HBDP02042 147 aa4.48□□□□□ -1.69
VPS53-209ENST00000570771 ESDP10768 282 aa4.48□□□□□ -1.69
VPS53-209ENST00000570771 PKIAP61925 76 aa4.48□□□□□ -1.69
VPS53-209ENST00000570771 PHLDA1Q8WV24 401 aaPredicted RBP4.48□□□□□ -1.69
VPS53-209ENST00000570771 VSIG2Q96IQ7 327 aa4.48□□□□□ -1.69
VPS53-209ENST00000570771 GTSF1LQ9H1H1 148 aa4.48□□□□□ -1.69
VPS53-209ENST00000570771 KLK5Q9Y337 293 aaPredicted RBP4.48□□□□□ -1.69
VPS53-209ENST00000570771 TRBV25-1A0A075B6N4 114 aa4.47□□□□□ -1.69
VPS53-209ENST00000570771 IGHV1-24A0A0C4DH33 117 aa4.47□□□□□ -1.69
VPS53-209ENST00000570771 LOC100131303A0A0U1RQF7 123 aa4.47□□□□□ -1.69
VPS53-209ENST00000570771 H7C423 109 aa4.47□□□□□ -1.69
VPS53-209ENST00000570771 UBE2L6O14933 153 aa4.47□□□□□ -1.69
VPS53-209ENST00000570771 LINC00694P0DN24 101 aa4.47□□□□□ -1.69
VPS53-209ENST00000570771 AMTP48728 403 aa4.47□□□□□ -1.69
VPS53-209ENST00000570771 TCTAP57738 103 aa4.47□□□□□ -1.69
VPS53-209ENST00000570771 TIRAPP58753 221 aa4.47□□□□□ -1.69
VPS53-209ENST00000570771 PACRGQ96M98 296 aaPredicted RBP4.47□□□□□ -1.69
VPS53-209ENST00000570771 CYSLTR1Q9Y271 337 aa4.47□□□□□ -1.69
VPS53-209ENST00000570771 A0A096LPF7 62 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 TRBV6-8A0A0A6YYG3 113 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 IGHV3-38A0A0C4DH36 116 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 C5orf52A6NGY3 159 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 IGLL5B9A064 214 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 ATP5LO75964 103 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 TSHBP01222 138 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 BTF3P20290 206 aaKnown RBP4.46□□□□□ -1.7
VPS53-209ENST00000570771 SNRPEP62304 92 aaKnown RBP4.46□□□□□ -1.7
VPS53-209ENST00000570771 KRTAP19-4Q3LI73 84 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 PAPPA-AS1Q5QFB9 102 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 CASC10Q5T4H9 136 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 CEMP1Q6PRD7 247 aaPredicted RBP4.46□□□□□ -1.7
VPS53-209ENST00000570771 MUC7Q8TAX7 377 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 WWC2-AS2Q96NR7 200 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 TMEM243Q9BU79 118 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 HSPB8Q9UJY1 196 aa4.46□□□□□ -1.7
VPS53-209ENST00000570771 EPPK1P58107 5090 aaKnown RBP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms