RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 AMTP48728 403 aa7.54□□□□□ -1.2
CAPN3-220ENST00000569827 WDR73Q6P4I2 378 aa7.54□□□□□ -1.2
CAPN3-220ENST00000569827 RASL11AQ6T310 242 aa7.54□□□□□ -1.2
CAPN3-220ENST00000569827 TMUB2Q71RG4 321 aa7.54□□□□□ -1.2
CAPN3-220ENST00000569827 OR2D3Q8NGH3 330 aa7.54□□□□□ -1.2
CAPN3-220ENST00000569827 TRAV26-2A0A0B4J265 109 aa7.53□□□□□ -1.2
CAPN3-220ENST00000569827 H7C1H1 209 aa7.53□□□□□ -1.2
CAPN3-220ENST00000569827 NDUFS6O75380 124 aaKnown RBP7.53□□□□□ -1.2
CAPN3-220ENST00000569827 RPS10P46783 165 aaKnown RBP7.53□□□□□ -1.2
CAPN3-220ENST00000569827 CENPWQ5EE01 88 aa7.53□□□□□ -1.2
CAPN3-220ENST00000569827 KCNRGQ8N5I3 272 aa7.53□□□□□ -1.2
CAPN3-220ENST00000569827 MBD3L1Q8WWY6 194 aa7.53□□□□□ -1.2
CAPN3-220ENST00000569827 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.52□□□□□ -1.21
CAPN3-220ENST00000569827 A0A0J9YXV3 536 aa7.52□□□□□ -1.21
CAPN3-220ENST00000569827 IGKV2-29A2NJV5 120 aaPredicted RBP7.52□□□□□ -1.21
CAPN3-220ENST00000569827 RAB19A4D1S5 217 aa7.52□□□□□ -1.21
CAPN3-220ENST00000569827 CCL20P78556 96 aa7.52□□□□□ -1.21
CAPN3-220ENST00000569827 COTL1Q14019 142 aa7.52□□□□□ -1.21
CAPN3-220ENST00000569827 CHCHD10Q8WYQ3 142 aaPredicted RBP7.52□□□□□ -1.21
CAPN3-220ENST00000569827 GAS8-AS1O95177 125 aa7.51□□□□□ -1.21
CAPN3-220ENST00000569827 LYZL1Q6UWQ5 148 aa7.51□□□□□ -1.21
CAPN3-220ENST00000569827 Q6ZNX1 250 aa7.51□□□□□ -1.21
CAPN3-220ENST00000569827 RPL39LQ96EH5 51 aaKnown RBP7.51□□□□□ -1.21
CAPN3-220ENST00000569827 PGLYRP4Q96LB8 373 aa7.51□□□□□ -1.21
CAPN3-220ENST00000569827 NIT2Q9NQR4 276 aa7.51□□□□□ -1.21
CAPN3-220ENST00000569827 NTF3P20783 257 aa7.5□□□□□ -1.21
CAPN3-220ENST00000569827 KRTAP10-8P60410 259 aa7.5□□□□□ -1.21
CAPN3-220ENST00000569827 CACNG7P62955 275 aa7.5□□□□□ -1.21
CAPN3-220ENST00000569827 RNASEKQ6P5S7 137 aaKnown RBP7.5□□□□□ -1.21
CAPN3-220ENST00000569827 GNG13Q9P2W3 67 aa7.5□□□□□ -1.21
CAPN3-220ENST00000569827 C19orf71A6NCJ1 209 aa7.49□□□□□ -1.21
CAPN3-220ENST00000569827 H2AFB1P0C5Y9 115 aa7.49□□□□□ -1.21
CAPN3-220ENST00000569827 AMMECR1LQ6DCA0 310 aa7.49□□□□□ -1.21
CAPN3-220ENST00000569827 CFAP161Q6P656 301 aa7.49□□□□□ -1.21
CAPN3-220ENST00000569827 GVQW2A0A096LPI5 108 aaPredicted RBP7.48□□□□□ -1.21
CAPN3-220ENST00000569827 TRGC1P0CF51 173 aa7.48□□□□□ -1.21
CAPN3-220ENST00000569827 XCL1P47992 114 aa7.48□□□□□ -1.21
CAPN3-220ENST00000569827 FOXI1Q12951 378 aa7.48□□□□□ -1.21
CAPN3-220ENST00000569827 GATD1Q8NB37 220 aa7.48□□□□□ -1.21
CAPN3-220ENST00000569827 C11orf52Q96A22 123 aa7.48□□□□□ -1.21
CAPN3-220ENST00000569827 TRBV20OR9-2A0A075B6H5 130 aa7.47□□□□□ -1.21
CAPN3-220ENST00000569827 UMAD1C9J7I0 102 aa7.47□□□□□ -1.21
CAPN3-220ENST00000569827 IFNA1P01562 189 aa7.47□□□□□ -1.21
CAPN3-220ENST00000569827 FOXA3P55318 350 aaPredicted RBP7.47□□□□□ -1.21
CAPN3-220ENST00000569827 RPS20P60866 119 aaKnown RBP7.47□□□□□ -1.21
CAPN3-220ENST00000569827 FGF6P10767 208 aa7.46□□□□□ -1.22
CAPN3-220ENST00000569827 GNG4P50150 75 aa7.46□□□□□ -1.22
CAPN3-220ENST00000569827 TWIST1Q15672 202 aa7.46□□□□□ -1.22
CAPN3-220ENST00000569827 REG3GQ6UW15 175 aa7.46□□□□□ -1.22
CAPN3-220ENST00000569827 SPINK6Q6UWN8 80 aa7.46□□□□□ -1.22
CAPN3-220ENST00000569827 CARD19Q96LW7 228 aa7.46□□□□□ -1.22
CAPN3-220ENST00000569827 CCL25O15444 150 aa7.45□□□□□ -1.22
CAPN3-220ENST00000569827 BCL2L11O43521 198 aa7.45□□□□□ -1.22
CAPN3-220ENST00000569827 APCSP02743 223 aa7.45□□□□□ -1.22
CAPN3-220ENST00000569827 CTRLP40313 264 aa7.45□□□□□ -1.22
CAPN3-220ENST00000569827 SRSF9Q13242 221 aaKnown RBP eCLIP7.45□□□□□ -1.22
CAPN3-220ENST00000569827 MANBALQ9NQG1 85 aa7.45□□□□□ -1.22
CAPN3-220ENST00000569827 KANTRA0A1W2PQU2 76 aa7.44□□□□□ -1.22
CAPN3-220ENST00000569827 F2Z2F3 143 aa7.44□□□□□ -1.22
CAPN3-220ENST00000569827 GAGE2BQ13066 116 aa7.44□□□□□ -1.22
CAPN3-220ENST00000569827 ZNF345Q14585 488 aa7.44□□□□□ -1.22
CAPN3-220ENST00000569827 NUDT10Q8NFP7 164 aa7.44□□□□□ -1.22
CAPN3-220ENST00000569827 NUDT11Q96G61 164 aa7.44□□□□□ -1.22
CAPN3-220ENST00000569827 RNASE7Q9H1E1 156 aaKnown RBP7.44□□□□□ -1.22
CAPN3-220ENST00000569827 XKRY2A2RUG3 117 aa7.43□□□□□ -1.22
CAPN3-220ENST00000569827 Q6ZRP5 223 aa7.43□□□□□ -1.22
CAPN3-220ENST00000569827 OR5A1Q8NGJ0 315 aa7.43□□□□□ -1.22
CAPN3-220ENST00000569827 MED9Q9NWA0 146 aa7.43□□□□□ -1.22
CAPN3-220ENST00000569827 LINC00959A0A1B0GUT2 108 aa7.42□□□□□ -1.22
CAPN3-220ENST00000569827 A0A1W2PNN7 141 aa7.42□□□□□ -1.22
CAPN3-220ENST00000569827 FAM231BA6NCW3 169 aa7.42□□□□□ -1.22
CAPN3-220ENST00000569827 SDHAF1A6NFY7 115 aa7.42□□□□□ -1.22
CAPN3-220ENST00000569827 BCL2P10415 239 aa7.42□□□□□ -1.22
CAPN3-220ENST00000569827 C9orf62Q8N4C0 152 aa7.42□□□□□ -1.22
CAPN3-220ENST00000569827 KRTAP3-3Q9BYR6 98 aa7.42□□□□□ -1.22
CAPN3-220ENST00000569827 KRTAP3-2Q9BYR7 98 aa7.42□□□□□ -1.22
CAPN3-220ENST00000569827 TMEM242Q9NWH2 141 aa7.42□□□□□ -1.22
CAPN3-220ENST00000569827 IGHV1-58A0A0C4DH39 117 aa7.41□□□□□ -1.22
CAPN3-220ENST00000569827 K7EN84 100 aa7.41□□□□□ -1.22
CAPN3-220ENST00000569827 PTTG1IPP53801 180 aa7.41□□□□□ -1.22
CAPN3-220ENST00000569827 SYCNQ0VAF6 134 aa7.41□□□□□ -1.22
CAPN3-220ENST00000569827 RPP21Q9H633 154 aaKnown RBP7.41□□□□□ -1.22
CAPN3-220ENST00000569827 NCR2O95944 276 aa7.4□□□□□ -1.22
CAPN3-220ENST00000569827 PMCHP20382 165 aa7.4□□□□□ -1.22
CAPN3-220ENST00000569827 MEF2BQ02080 365 aaPredicted RBP7.4□□□□□ -1.22
CAPN3-220ENST00000569827 RNASE13Q5GAN3 156 aaKnown RBP7.4□□□□□ -1.22
CAPN3-220ENST00000569827 CNFNQ9BYD5 112 aa7.4□□□□□ -1.22
CAPN3-220ENST00000569827 LINC00474Q9P2X8 69 aa7.4□□□□□ -1.22
CAPN3-220ENST00000569827 PSORS1C2Q9UIG4 136 aa7.4□□□□□ -1.22
CAPN3-220ENST00000569827 IGLV4-69A0A075B6H9 119 aa7.39□□□□□ -1.23
CAPN3-220ENST00000569827 HMSDA8MTL9 139 aa7.39□□□□□ -1.23
CAPN3-220ENST00000569827 ZNF561-AS1K7EIQ3 104 aa7.39□□□□□ -1.23
CAPN3-220ENST00000569827 TSHBP01222 138 aa7.39□□□□□ -1.23
CAPN3-220ENST00000569827 PHF5AQ7RTV0 110 aaKnown RBP7.39□□□□□ -1.23
CAPN3-220ENST00000569827 SMIM12Q96EX1 92 aa7.39□□□□□ -1.23
CAPN3-220ENST00000569827 BTF3L4Q96K17 158 aa7.39□□□□□ -1.23
CAPN3-220ENST00000569827 TRAV1-1A0A0B4J248 108 aa7.38□□□□□ -1.23
CAPN3-220ENST00000569827 H7C423 109 aa7.38□□□□□ -1.23
CAPN3-220ENST00000569827 CAMPP49913 170 aa7.38□□□□□ -1.23
CAPN3-220ENST00000569827 RGS21Q2M5E4 152 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms