RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 LAMTOR2Q9Y2Q5 125 aa5.84□□□□□ -1.47
SF3B3-212ENST00000568539 IGHV3-38A0A0C4DH36 116 aa5.83□□□□□ -1.48
SF3B3-212ENST00000568539 TRBV27A0A0K0K1C4 114 aa5.83□□□□□ -1.48
SF3B3-212ENST00000568539 SDHAF1A6NFY7 115 aa5.83□□□□□ -1.48
SF3B3-212ENST00000568539 PRSS47A8MTI9 375 aa5.83□□□□□ -1.48
SF3B3-212ENST00000568539 TRGC2P03986 189 aa5.83□□□□□ -1.48
SF3B3-212ENST00000568539 POLR2KP53803 58 aaKnown RBP5.83□□□□□ -1.48
SF3B3-212ENST00000568539 TIRAPP58753 221 aa5.83□□□□□ -1.48
SF3B3-212ENST00000568539 RPL32P62910 135 aaKnown RBP5.83□□□□□ -1.48
SF3B3-212ENST00000568539 ESRGQ1W209 222 aa5.83□□□□□ -1.48
SF3B3-212ENST00000568539 LYPD5Q6UWN5 251 aa5.83□□□□□ -1.48
SF3B3-212ENST00000568539 GTSF1LQ9H1H1 148 aa5.83□□□□□ -1.48
SF3B3-212ENST00000568539 FRAS1Q86XX4 4008 aa5.83□□□□□ -1.48
SF3B3-212ENST00000568539 VCYO14598 125 aa5.82□□□□□ -1.48
SF3B3-212ENST00000568539 NTM-AS1Q6ZSK4 140 aa5.82□□□□□ -1.48
SF3B3-212ENST00000568539 SMIM2Q9BVW6 85 aa5.82□□□□□ -1.48
SF3B3-212ENST00000568539 IGLV2-18A0A075B6J9 118 aa5.81□□□□□ -1.48
SF3B3-212ENST00000568539 I3L3M4 83 aa5.81□□□□□ -1.48
SF3B3-212ENST00000568539 TSHBP01222 138 aa5.81□□□□□ -1.48
SF3B3-212ENST00000568539 CCL18P55774 89 aa5.81□□□□□ -1.48
SF3B3-212ENST00000568539 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.81□□□□□ -1.48
SF3B3-212ENST00000568539 DEFB104AQ8WTQ1 72 aa5.81□□□□□ -1.48
SF3B3-212ENST00000568539 MAP1LC3AQ9H492 121 aa5.81□□□□□ -1.48
SF3B3-212ENST00000568539 LINC00588Q9Y4M8 146 aa5.81□□□□□ -1.48
SF3B3-212ENST00000568539 PLECQ15149 4684 aaKnown RBP5.81□□□□□ -1.48
SF3B3-212ENST00000568539 TRBV6-8A0A0A6YYG3 113 aa5.8□□□□□ -1.48
SF3B3-212ENST00000568539 LOC389332A0A1B0GUA5 103 aa5.8□□□□□ -1.48
SF3B3-212ENST00000568539 PMCHP20382 165 aa5.8□□□□□ -1.48
SF3B3-212ENST00000568539 COTL1Q14019 142 aa5.8□□□□□ -1.48
SF3B3-212ENST00000568539 IQCJQ1A5X6 159 aa5.8□□□□□ -1.48
SF3B3-212ENST00000568539 TMEM97Q5BJF2 176 aa5.8□□□□□ -1.48
SF3B3-212ENST00000568539 LELP1Q5T871 98 aa5.8□□□□□ -1.48
SF3B3-212ENST00000568539 C18orf32Q8TCD1 76 aa5.8□□□□□ -1.48
SF3B3-212ENST00000568539 MRPS16Q9Y3D3 137 aaKnown RBP5.8□□□□□ -1.48
SF3B3-212ENST00000568539 NACAE9PAV3 2078 aa5.79□□□□□ -1.48
SF3B3-212ENST00000568539 IFI27P40305 119 aaPredicted RBP5.79□□□□□ -1.48
SF3B3-212ENST00000568539 Q8N8P6 123 aa5.79□□□□□ -1.48
SF3B3-212ENST00000568539 KIR2DL4Q99706 377 aa5.79□□□□□ -1.48
SF3B3-212ENST00000568539 UPK3BQ9BT76 320 aa5.79□□□□□ -1.48
SF3B3-212ENST00000568539 NXT2Q9NPJ8 142 aaKnown RBP5.79□□□□□ -1.48
SF3B3-212ENST00000568539 TRBV25-1A0A075B6N4 114 aa5.78□□□□□ -1.48
SF3B3-212ENST00000568539 IGHV1-24A0A0C4DH33 117 aa5.78□□□□□ -1.48
SF3B3-212ENST00000568539 TCAPO15273 167 aa5.78□□□□□ -1.48
SF3B3-212ENST00000568539 ESDP10768 282 aa5.78□□□□□ -1.48
SF3B3-212ENST00000568539 FCER1GP30273 86 aa5.78□□□□□ -1.48
SF3B3-212ENST00000568539 AMTP48728 403 aa5.78□□□□□ -1.48
SF3B3-212ENST00000568539 LGALS9CQ6DKI2 356 aa5.78□□□□□ -1.48
SF3B3-212ENST00000568539 WFDC10BQ8IUB3 73 aa5.78□□□□□ -1.48
SF3B3-212ENST00000568539 PRSS3P2Q8NHM4 247 aa5.78□□□□□ -1.48
SF3B3-212ENST00000568539 CHCHD7Q9BUK0 85 aa5.78□□□□□ -1.48
SF3B3-212ENST00000568539 TRAV8-6A0A0B4J262 113 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 LINC01546A6NGU7 62 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 K7EMI3 77 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 HIST1H2BKO60814 126 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 HIST1H2BJP06899 126 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 HIST1H2BOP23527 126 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 HIST1H2BBP33778 126 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 HIST1H2BDP58876 126 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 HIST1H2BCP62807 126 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 Q0VG73 95 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 HIST2H2BEQ16778 126 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.77□□□□□ -1.49
SF3B3-212ENST00000568539 UBE2DNLQ8IWF7 75 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 LINC00476Q8WZB0 136 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 HIST1H2BHQ93079 126 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 URB1-AS1Q96HZ7 61 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 HIST1H2BNQ99877 126 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 HIST1H2BMQ99879 126 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 CHCHD5Q9BSY4 110 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 TMEM243Q9BU79 118 aa5.77□□□□□ -1.49
SF3B3-212ENST00000568539 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.77□□□□□ -1.49
SF3B3-212ENST00000568539 KIAA1109Q2LD37 5005 aa5.76□□□□□ -1.49
SF3B3-212ENST00000568539 C1orf196B1AJZ1 125 aa5.76□□□□□ -1.49
SF3B3-212ENST00000568539 LINC00614P0C842 121 aa5.76□□□□□ -1.49
SF3B3-212ENST00000568539 FA2HQ7L5A8 372 aa5.76□□□□□ -1.49
SF3B3-212ENST00000568539 NIT1Q86X76 327 aa5.76□□□□□ -1.49
SF3B3-212ENST00000568539 C20orf203Q8NBC4 194 aa5.76□□□□□ -1.49
SF3B3-212ENST00000568539 Q9H8V8 135 aa5.76□□□□□ -1.49
SF3B3-212ENST00000568539 ALMS1Q8TCU4 4167 aa5.76□□□□□ -1.49
SF3B3-212ENST00000568539 ABCA13Q86UQ4 5058 aa5.76□□□□□ -1.49
SF3B3-212ENST00000568539 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.75□□□□□ -1.49
SF3B3-212ENST00000568539 IGKV2-29A2NJV5 120 aaPredicted RBP5.75□□□□□ -1.49
SF3B3-212ENST00000568539 H7C423 109 aa5.75□□□□□ -1.49
SF3B3-212ENST00000568539 SIVA1O15304 175 aa5.75□□□□□ -1.49
SF3B3-212ENST00000568539 LY6G6CO95867 125 aa5.75□□□□□ -1.49
SF3B3-212ENST00000568539 DNAH10OSP0CZ25 163 aa5.75□□□□□ -1.49
SF3B3-212ENST00000568539 RAB5BP61020 215 aa5.75□□□□□ -1.49
SF3B3-212ENST00000568539 GAGE6Q13070 117 aa5.75□□□□□ -1.49
SF3B3-212ENST00000568539 LAGE3Q14657 143 aa5.75□□□□□ -1.49
SF3B3-212ENST00000568539 ORMDL2Q53FV1 153 aa5.75□□□□□ -1.49
SF3B3-212ENST00000568539 Q8N3U1 123 aa5.75□□□□□ -1.49
SF3B3-212ENST00000568539 UBE2L6O14933 153 aa5.74□□□□□ -1.49
SF3B3-212ENST00000568539 LINC00310P59036 64 aa5.74□□□□□ -1.49
SF3B3-212ENST00000568539 PKIAP61925 76 aa5.74□□□□□ -1.49
SF3B3-212ENST00000568539 RPL39P62891 51 aaKnown RBP5.74□□□□□ -1.49
SF3B3-212ENST00000568539 MPV17L2Q567V2 206 aa5.74□□□□□ -1.49
SF3B3-212ENST00000568539 LINC01556Q5JQF7 62 aa5.74□□□□□ -1.49
SF3B3-212ENST00000568539 RNASEKQ6P5S7 137 aaKnown RBP5.74□□□□□ -1.49
SF3B3-212ENST00000568539 MRPL52Q86TS9 123 aaKnown RBP5.74□□□□□ -1.49
SF3B3-212ENST00000568539 BAGE3Q86Y29 109 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms