RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 IGHV3-30P01768 117 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 IGHV3-33P01772 117 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 IGHV3-30-3P0DP02 117 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 IGHV3-30-5P0DP03 117 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 COA6Q5JTJ3 125 aaKnown RBP6.59□□□□□ -1.35
CLK3-220ENST00000567992 KCNIP4Q6PIL6 250 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 NTM-AS1Q6ZSK4 140 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 C10orf126Q8N4M7 172 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 GATD1Q8NB37 220 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 NUP35Q8NFH5 326 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 FRZBQ92765 325 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 DNAJC30Q96LL9 226 aa6.59□□□□□ -1.35
CLK3-220ENST00000567992 TRBV6-8A0A0A6YYG3 113 aa6.58□□□□□ -1.36
CLK3-220ENST00000567992 TRAV26-2A0A0B4J265 109 aa6.58□□□□□ -1.36
CLK3-220ENST00000567992 A0A1B0GUT8 65 aa6.58□□□□□ -1.36
CLK3-220ENST00000567992 SMIM27A0A1W2PRY6 76 aa6.58□□□□□ -1.36
CLK3-220ENST00000567992 H7C1H1 209 aa6.58□□□□□ -1.36
CLK3-220ENST00000567992 S100A2P29034 98 aa6.58□□□□□ -1.36
CLK3-220ENST00000567992 RASL11AQ6T310 242 aa6.58□□□□□ -1.36
CLK3-220ENST00000567992 DAZ4Q86SG3 579 aaKnown RBP6.58□□□□□ -1.36
CLK3-220ENST00000567992 NIT1Q86X76 327 aa6.58□□□□□ -1.36
CLK3-220ENST00000567992 HIST3H2BBQ8N257 126 aa6.58□□□□□ -1.36
CLK3-220ENST00000567992 DAZ3Q9NR90 486 aaKnown RBP6.58□□□□□ -1.36
CLK3-220ENST00000567992 PCP4L1A6NKN8 68 aa6.57□□□□□ -1.36
CLK3-220ENST00000567992 GAS8-AS1O95177 125 aa6.57□□□□□ -1.36
CLK3-220ENST00000567992 LAGE3Q14657 143 aa6.57□□□□□ -1.36
CLK3-220ENST00000567992 RPL39LQ96EH5 51 aaKnown RBP6.57□□□□□ -1.36
CLK3-220ENST00000567992 RNF185Q96GF1 192 aa6.57□□□□□ -1.36
CLK3-220ENST00000567992 TMEM191AQ9H0A3 160 aa6.57□□□□□ -1.36
CLK3-220ENST00000567992 NIT2Q9NQR4 276 aa6.57□□□□□ -1.36
CLK3-220ENST00000567992 NAT8BQ9UHF3 227 aa6.57□□□□□ -1.36
CLK3-220ENST00000567992 DNAH8Q96JB1 4490 aa6.56□□□□□ -1.36
CLK3-220ENST00000567992 HSPG2P98160 4391 aa6.56□□□□□ -1.36
CLK3-220ENST00000567992 NFE4Q86UQ8 179 aa6.56□□□□□ -1.36
CLK3-220ENST00000567992 BORCS7Q96B45 105 aa6.56□□□□□ -1.36
CLK3-220ENST00000567992 KRTAP10-2P60368 255 aa6.55□□□□□ -1.36
CLK3-220ENST00000567992 CTAG1AP78358 180 aa6.55□□□□□ -1.36
CLK3-220ENST00000567992 RIGQ13278 110 aa6.55□□□□□ -1.36
CLK3-220ENST00000567992 IQCJQ1A5X6 159 aa6.55□□□□□ -1.36
CLK3-220ENST00000567992 MPV17L2Q567V2 206 aa6.55□□□□□ -1.36
CLK3-220ENST00000567992 TMEM97Q5BJF2 176 aa6.55□□□□□ -1.36
CLK3-220ENST00000567992 SMIM15Q7Z3B0 74 aa6.55□□□□□ -1.36
CLK3-220ENST00000567992 CHCHD7Q9BUK0 85 aa6.55□□□□□ -1.36
CLK3-220ENST00000567992 A0A087WTM6 91 aa6.54□□□□□ -1.36
CLK3-220ENST00000567992 A0A1B0GXF2 115 aa6.54□□□□□ -1.36
CLK3-220ENST00000567992 RAB4AP20338 218 aa6.54□□□□□ -1.36
CLK3-220ENST00000567992 AMN1Q8IY45 258 aa6.54□□□□□ -1.36
CLK3-220ENST00000567992 Q9HAA7 133 aa6.54□□□□□ -1.36
CLK3-220ENST00000567992 TRBV25-1A0A075B6N4 114 aa6.53□□□□□ -1.36
CLK3-220ENST00000567992 A0A087WX48 190 aa6.53□□□□□ -1.36
CLK3-220ENST00000567992 IGHV1-24A0A0C4DH33 117 aa6.53□□□□□ -1.36
CLK3-220ENST00000567992 TRBV6-5A0A0K0K1A5 114 aa6.53□□□□□ -1.36
CLK3-220ENST00000567992 LRCOL1A6NCL2 159 aa6.53□□□□□ -1.36
CLK3-220ENST00000567992 PYY3Q5JQD4 70 aa6.53□□□□□ -1.36
CLK3-220ENST00000567992 SPATA12Q7Z6I5 190 aa6.53□□□□□ -1.36
CLK3-220ENST00000567992 OR10D4PQ8NGN7 298 aa6.53□□□□□ -1.36
CLK3-220ENST00000567992 DEFB104AQ8WTQ1 72 aa6.53□□□□□ -1.36
CLK3-220ENST00000567992 HIST1H2BLQ99880 126 aa6.53□□□□□ -1.36
CLK3-220ENST00000567992 CHCHD5Q9BSY4 110 aa6.53□□□□□ -1.36
CLK3-220ENST00000567992 KLK12Q9UKR0 248 aa6.53□□□□□ -1.36
CLK3-220ENST00000567992 SDHAF1A6NFY7 115 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 SMKR1H3BMG3 65 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 NCR2O95944 276 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 CAMPP49913 170 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 RBX1P62877 108 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 GAGE6Q13070 117 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 COX19Q49B96 90 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 FAM104BQ5XKR9 115 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 MRPL54Q6P161 138 aaKnown RBP6.52□□□□□ -1.37
CLK3-220ENST00000567992 MAPKAPK5-AS1Q8N8E1 139 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 NRACQ8N912 160 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 Q8N976 141 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 MRAP2Q96G30 205 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 TRAPPC1Q9Y5R8 145 aa6.52□□□□□ -1.37
CLK3-220ENST00000567992 TRAV8-3A0A0A6YYJ7 113 aa6.51□□□□□ -1.37
CLK3-220ENST00000567992 A0A1B0GW15 77 aa6.51□□□□□ -1.37
CLK3-220ENST00000567992 TMEM262E9PQX1 116 aa6.51□□□□□ -1.37
CLK3-220ENST00000567992 FABP4P15090 132 aa6.51□□□□□ -1.37
CLK3-220ENST00000567992 PKIAP61925 76 aa6.51□□□□□ -1.37
CLK3-220ENST00000567992 HBBP68871 147 aa6.51□□□□□ -1.37
CLK3-220ENST00000567992 WFDC2Q14508 124 aa6.51□□□□□ -1.37
CLK3-220ENST00000567992 MRPL51Q4U2R6 128 aaKnown RBP6.51□□□□□ -1.37
CLK3-220ENST00000567992 ENHOQ6UWT2 76 aa6.51□□□□□ -1.37
CLK3-220ENST00000567992 PACRGQ96M98 296 aaPredicted RBP6.51□□□□□ -1.37
CLK3-220ENST00000567992 TMEM243Q9BU79 118 aa6.51□□□□□ -1.37
CLK3-220ENST00000567992 TMEM70Q9BUB7 260 aa6.51□□□□□ -1.37
CLK3-220ENST00000567992 LINC00587B1AMM8 73 aa6.5□□□□□ -1.37
CLK3-220ENST00000567992 TSHBP01222 138 aa6.5□□□□□ -1.37
CLK3-220ENST00000567992 FUSP35637 526 aaKnown RBP eCLIP6.5□□□□□ -1.37
CLK3-220ENST00000567992 AMTP48728 403 aa6.5□□□□□ -1.37
CLK3-220ENST00000567992 POLR2KP53803 58 aaKnown RBP6.5□□□□□ -1.37
CLK3-220ENST00000567992 COTL1Q14019 142 aa6.5□□□□□ -1.37
CLK3-220ENST00000567992 JOSD1Q15040 202 aaPredicted RBP6.5□□□□□ -1.37
CLK3-220ENST00000567992 ATP5L2Q7Z4Y8 100 aa6.5□□□□□ -1.37
CLK3-220ENST00000567992 C20orf203Q8NBC4 194 aa6.5□□□□□ -1.37
CLK3-220ENST00000567992 UBE2WQ96B02 151 aa6.5□□□□□ -1.37
CLK3-220ENST00000567992 PRR34Q9NV39 138 aa6.5□□□□□ -1.37
CLK3-220ENST00000567992 IGLV4-60A0A075B6I1 120 aa6.49□□□□□ -1.37
CLK3-220ENST00000567992 TRBV27A0A0K0K1C4 114 aa6.49□□□□□ -1.37
CLK3-220ENST00000567992 A0A1B0GUV1 79 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms