RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 A8MWL6 223 aa12.11□□□□□ -0.47
SMPD3-209ENST00000567223 COTL1Q14019 142 aa12.11□□□□□ -0.47
SMPD3-209ENST00000567223 GATD1Q8NB37 220 aa12.11□□□□□ -0.47
SMPD3-209ENST00000567223 CLRN3Q8NCR9 226 aa12.11□□□□□ -0.47
SMPD3-209ENST00000567223 FAM210AQ96ND0 272 aa12.11□□□□□ -0.47
SMPD3-209ENST00000567223 NCR2O95944 276 aa12.1□□□□□ -0.47
SMPD3-209ENST00000567223 HLA-DQA1P01909 254 aa12.1□□□□□ -0.47
SMPD3-209ENST00000567223 LINC01620Q4KN68 170 aa12.1□□□□□ -0.47
SMPD3-209ENST00000567223 SMIM15Q7Z3B0 74 aa12.1□□□□□ -0.47
SMPD3-209ENST00000567223 LINC00528Q8N1L1 170 aa12.1□□□□□ -0.47
SMPD3-209ENST00000567223 DMBT1Q9UGM3 2413 aaPredicted RBP12.09□□□□□ -0.47
SMPD3-209ENST00000567223 FAM231BA6NCW3 169 aa12.09□□□□□ -0.47
SMPD3-209ENST00000567223 GATCO43716 136 aaKnown RBP12.09□□□□□ -0.47
SMPD3-209ENST00000567223 GFRA4Q9GZZ7 299 aa12.09□□□□□ -0.47
SMPD3-209ENST00000567223 hCG_2014768A0A024R1R8 64 aa12.08□□□□□ -0.48
SMPD3-209ENST00000567223 IGLV4-60A0A075B6I1 120 aa12.08□□□□□ -0.48
SMPD3-209ENST00000567223 H7C423 109 aa12.08□□□□□ -0.48
SMPD3-209ENST00000567223 PRSS1P07477 247 aa12.08□□□□□ -0.48
SMPD3-209ENST00000567223 C9orf163Q8N9P6 203 aa12.08□□□□□ -0.48
SMPD3-209ENST00000567223 AMTP48728 403 aa12.07□□□□□ -0.48
SMPD3-209ENST00000567223 LINC01551Q86U37 167 aa12.07□□□□□ -0.48
SMPD3-209ENST00000567223 CIRBP-AS1Q8TBR5 109 aa12.07□□□□□ -0.48
SMPD3-209ENST00000567223 TRBV6-5A0A0K0K1A5 114 aa12.06□□□□□ -0.48
SMPD3-209ENST00000567223 UBE2L6O14933 153 aa12.06□□□□□ -0.48
SMPD3-209ENST00000567223 CNBPP62633 177 aaKnown RBP12.06□□□□□ -0.48
SMPD3-209ENST00000567223 CLPSL2Q6UWE3 100 aa12.06□□□□□ -0.48
SMPD3-209ENST00000567223 SMIM7Q9BQ49 75 aa12.06□□□□□ -0.48
SMPD3-209ENST00000567223 TRAV26-2A0A0B4J265 109 aa12.05□□□□□ -0.48
SMPD3-209ENST00000567223 DEFB104AQ8WTQ1 72 aa12.05□□□□□ -0.48
SMPD3-209ENST00000567223 TSKUQ8WUA8 353 aa12.05□□□□□ -0.48
SMPD3-209ENST00000567223 EIF5A2Q9GZV4 153 aaKnown RBP12.05□□□□□ -0.48
SMPD3-209ENST00000567223 OSTCQ9NRP0 149 aa12.05□□□□□ -0.48
SMPD3-209ENST00000567223 KRTAP10-4P60372 401 aaPredicted RBP12.04□□□□□ -0.48
SMPD3-209ENST00000567223 FLG2Q5D862 2391 aaPredicted RBP12.03□□□□□ -0.48
SMPD3-209ENST00000567223 BORCS7Q96B45 105 aa12.03□□□□□ -0.48
SMPD3-209ENST00000567223 TMEM191AQ9H0A3 160 aa12.03□□□□□ -0.48
SMPD3-209ENST00000567223 A0A1B0GUT8 65 aa12.02□□□□□ -0.49
SMPD3-209ENST00000567223 SDHAF1A6NFY7 115 aa12.02□□□□□ -0.49
SMPD3-209ENST00000567223 ZNF727A8MUV8 499 aa12.02□□□□□ -0.49
SMPD3-209ENST00000567223 SRP19P09132 144 aaKnown RBP12.02□□□□□ -0.49
SMPD3-209ENST00000567223 RPL39LQ96EH5 51 aaKnown RBP12.02□□□□□ -0.49
SMPD3-209ENST00000567223 IGLV10-54A0A075B6I4 117 aa12.01□□□□□ -0.49
SMPD3-209ENST00000567223 HIGD1CA8MV81 97 aa12.01□□□□□ -0.49
SMPD3-209ENST00000567223 ZNF25P17030 456 aaPredicted RBP12.01□□□□□ -0.49
SMPD3-209ENST00000567223 FAM74A3Q4VXF1 159 aa12.01□□□□□ -0.49
SMPD3-209ENST00000567223 I3L3M4 83 aa12□□□□□ -0.49
SMPD3-209ENST00000567223 APCSP02743 223 aa12□□□□□ -0.49
SMPD3-209ENST00000567223 CEBPGP53567 150 aa12□□□□□ -0.49
SMPD3-209ENST00000567223 CIRBPQ14011 172 aaKnown RBP12□□□□□ -0.49
SMPD3-209ENST00000567223 SDIM1Q6ZPB5 146 aa12□□□□□ -0.49
SMPD3-209ENST00000567223 KRTAP29-1A8MX34 341 aaPredicted RBP11.99□□□□□ -0.49
SMPD3-209ENST00000567223 MRAP2Q96G30 205 aa11.99□□□□□ -0.49
SMPD3-209ENST00000567223 TRBV27A0A0K0K1C4 114 aa11.98□□□□□ -0.49
SMPD3-209ENST00000567223 ESDP10768 282 aa11.98□□□□□ -0.49
SMPD3-209ENST00000567223 SMDT1Q9H4I9 107 aa11.98□□□□□ -0.49
SMPD3-209ENST00000567223 V9GYV3 84 aa11.98□□□□□ -0.49
SMPD3-209ENST00000567223 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.97□□□□□ -0.49
SMPD3-209ENST00000567223 hDV102S1A0JD36 115 aa11.97□□□□□ -0.49
SMPD3-209ENST00000567223 FGF6P10767 208 aa11.97□□□□□ -0.49
SMPD3-209ENST00000567223 AMMECR1LQ6DCA0 310 aa11.97□□□□□ -0.49
SMPD3-209ENST00000567223 CFAP161Q6P656 301 aa11.97□□□□□ -0.49
SMPD3-209ENST00000567223 ISOC2Q96AB3 205 aa11.97□□□□□ -0.49
SMPD3-209ENST00000567223 RNF185Q96GF1 192 aa11.97□□□□□ -0.49
SMPD3-209ENST00000567223 RAB4AP20338 218 aa11.96□□□□□ -0.49
SMPD3-209ENST00000567223 POLR2KP53803 58 aaKnown RBP11.96□□□□□ -0.49
SMPD3-209ENST00000567223 ST20Q9HBF5 79 aa11.96□□□□□ -0.49
SMPD3-209ENST00000567223 AP5S1Q9NUS5 200 aa11.96□□□□□ -0.49
SMPD3-209ENST00000567223 A0A1B0GVG6 124 aa11.95□□□□□ -0.5
SMPD3-209ENST00000567223 PPP1R17O96001 155 aa11.95□□□□□ -0.5
SMPD3-209ENST00000567223 PMCHP20382 165 aa11.95□□□□□ -0.5
SMPD3-209ENST00000567223 TMEM241Q24JQ0 296 aa11.95□□□□□ -0.5
SMPD3-209ENST00000567223 MRPL52Q86TS9 123 aaKnown RBP11.95□□□□□ -0.5
SMPD3-209ENST00000567223 C15orf56Q8N910 161 aa11.95□□□□□ -0.5
SMPD3-209ENST00000567223 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.95□□□□□ -0.5
SMPD3-209ENST00000567223 IGHV3-64A0A075B6Q5 118 aa11.94□□□□□ -0.5
SMPD3-209ENST00000567223 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.94□□□□□ -0.5
SMPD3-209ENST00000567223 IGKV2-29A2NJV5 120 aaPredicted RBP11.94□□□□□ -0.5
SMPD3-209ENST00000567223 TSHBP01222 138 aa11.94□□□□□ -0.5
SMPD3-209ENST00000567223 SLPIP03973 132 aa11.94□□□□□ -0.5
SMPD3-209ENST00000567223 RIGQ13278 110 aa11.94□□□□□ -0.5
SMPD3-209ENST00000567223 NUP35Q8NFH5 326 aa11.94□□□□□ -0.5
SMPD3-209ENST00000567223 OR5A1Q8NGJ0 315 aa11.94□□□□□ -0.5
SMPD3-209ENST00000567223 NAT8BQ9UHF3 227 aa11.94□□□□□ -0.5
SMPD3-209ENST00000567223 GAGE12HA6NDE8 117 aa11.93□□□□□ -0.5
SMPD3-209ENST00000567223 GAS8-AS1O95177 125 aa11.93□□□□□ -0.5
SMPD3-209ENST00000567223 RPL23P62829 140 aaKnown RBP11.93□□□□□ -0.5
SMPD3-209ENST00000567223 RNASEKQ6P5S7 137 aaKnown RBP11.93□□□□□ -0.5
SMPD3-209ENST00000567223 CHCHD10Q8WYQ3 142 aaPredicted RBP11.93□□□□□ -0.5
SMPD3-209ENST00000567223 RPS10P46783 165 aaKnown RBP11.92□□□□□ -0.5
SMPD3-209ENST00000567223 AMN1Q8IY45 258 aa11.92□□□□□ -0.5
SMPD3-209ENST00000567223 BTF3L4Q96K17 158 aa11.92□□□□□ -0.5
SMPD3-209ENST00000567223 NAT8Q9UHE5 227 aa11.92□□□□□ -0.5
SMPD3-209ENST00000567223 GVQW2A0A096LPI5 108 aaPredicted RBP11.91□□□□□ -0.5
SMPD3-209ENST00000567223 SMIM27A0A1W2PRY6 76 aa11.91□□□□□ -0.5
SMPD3-209ENST00000567223 PANO1I0J062 215 aa11.91□□□□□ -0.5
SMPD3-209ENST00000567223 TMEM101Q96IK0 257 aa11.91□□□□□ -0.5
SMPD3-209ENST00000567223 CSDC2Q9Y534 153 aaKnown RBP11.91□□□□□ -0.5
SMPD3-209ENST00000567223 A0A1B0GW15 77 aa11.9□□□□□ -0.5
SMPD3-209ENST00000567223 C9JQL5 133 aa11.9□□□□□ -0.5
SMPD3-209ENST00000567223 J3QL48 77 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms