RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 TMEM243Q9BU79 118 aa12.02□□□□□ -0.49
CLN3-221ENST00000566057 IGLV4-60A0A075B6I1 120 aa12.01□□□□□ -0.49
CLN3-221ENST00000566057 C9JQL5 133 aa12.01□□□□□ -0.49
CLN3-221ENST00000566057 Q6ZSA8 131 aa12.01□□□□□ -0.49
CLN3-221ENST00000566057 SMIM15Q7Z3B0 74 aa12.01□□□□□ -0.49
CLN3-221ENST00000566057 C20orf203Q8NBC4 194 aa12.01□□□□□ -0.49
CLN3-221ENST00000566057 OSTCQ9NRP0 149 aa12.01□□□□□ -0.49
CLN3-221ENST00000566057 A0A1B0GUV1 79 aa12□□□□□ -0.49
CLN3-221ENST00000566057 SRSF3P84103 164 aaKnown RBP12□□□□□ -0.49
CLN3-221ENST00000566057 COTL1Q14019 142 aa12□□□□□ -0.49
CLN3-221ENST00000566057 TEX261Q6UWH6 196 aa12□□□□□ -0.49
CLN3-221ENST00000566057 TSKUQ8WUA8 353 aa12□□□□□ -0.49
CLN3-221ENST00000566057 GFRA4Q9GZZ7 299 aa12□□□□□ -0.49
CLN3-221ENST00000566057 HIGD1CA8MV81 97 aa11.99□□□□□ -0.49
CLN3-221ENST00000566057 HLA-DQA1P01909 254 aa11.99□□□□□ -0.49
CLN3-221ENST00000566057 AMTP48728 403 aa11.99□□□□□ -0.49
CLN3-221ENST00000566057 REG3AQ06141 175 aa11.99□□□□□ -0.49
CLN3-221ENST00000566057 USP17L23D6RBM5 183 aa11.98□□□□□ -0.49
CLN3-221ENST00000566057 GAS8-AS1O95177 125 aa11.98□□□□□ -0.49
CLN3-221ENST00000566057 V9GYV3 84 aa11.98□□□□□ -0.49
CLN3-221ENST00000566057 FLG2Q5D862 2391 aaPredicted RBP11.97□□□□□ -0.49
CLN3-221ENST00000566057 IGLV10-54A0A075B6I4 117 aa11.97□□□□□ -0.49
CLN3-221ENST00000566057 A0A1B0GUT8 65 aa11.97□□□□□ -0.49
CLN3-221ENST00000566057 TMEM241Q24JQ0 296 aa11.97□□□□□ -0.49
CLN3-221ENST00000566057 ISOC2Q96AB3 205 aa11.97□□□□□ -0.49
CLN3-221ENST00000566057 FAM231BA6NCW3 169 aa11.96□□□□□ -0.49
CLN3-221ENST00000566057 UBE2L6O14933 153 aa11.96□□□□□ -0.49
CLN3-221ENST00000566057 INAFM2P0DMQ5 153 aa11.96□□□□□ -0.49
CLN3-221ENST00000566057 RPL23P62829 140 aaKnown RBP11.96□□□□□ -0.49
CLN3-221ENST00000566057 C14orf177Q52M58 125 aa11.96□□□□□ -0.49
CLN3-221ENST00000566057 BORCS7Q96B45 105 aa11.96□□□□□ -0.49
CLN3-221ENST00000566057 SDHAF1A6NFY7 115 aa11.95□□□□□ -0.5
CLN3-221ENST00000566057 FAM229AH3BQW9 127 aa11.95□□□□□ -0.5
CLN3-221ENST00000566057 PRSS1P07477 247 aa11.95□□□□□ -0.5
CLN3-221ENST00000566057 FAM74A3Q4VXF1 159 aa11.95□□□□□ -0.5
CLN3-221ENST00000566057 RNF185Q96GF1 192 aa11.95□□□□□ -0.5
CLN3-221ENST00000566057 NUP35Q8NFH5 326 aa11.94□□□□□ -0.5
CLN3-221ENST00000566057 TMEM191AQ9H0A3 160 aa11.94□□□□□ -0.5
CLN3-221ENST00000566057 TRBV6-5A0A0K0K1A5 114 aa11.93□□□□□ -0.5
CLN3-221ENST00000566057 NCR2O95944 276 aa11.93□□□□□ -0.5
CLN3-221ENST00000566057 RAB4AP20338 218 aa11.93□□□□□ -0.5
CLN3-221ENST00000566057 PEA15Q15121 130 aa11.93□□□□□ -0.5
CLN3-221ENST00000566057 ADIRFQ15847 76 aa11.93□□□□□ -0.5
CLN3-221ENST00000566057 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.92□□□□□ -0.5
CLN3-221ENST00000566057 TRAV8-4A0A0B4J246 113 aa11.92□□□□□ -0.5
CLN3-221ENST00000566057 IGKV2-29A2NJV5 120 aaPredicted RBP11.92□□□□□ -0.5
CLN3-221ENST00000566057 NAT8Q9UHE5 227 aa11.92□□□□□ -0.5
CLN3-221ENST00000566057 I3L3M4 83 aa11.91□□□□□ -0.5
CLN3-221ENST00000566057 PMCHP20382 165 aa11.91□□□□□ -0.5
CLN3-221ENST00000566057 RPS10P46783 165 aaKnown RBP11.91□□□□□ -0.5
CLN3-221ENST00000566057 SCXQ7RTU7 201 aa11.91□□□□□ -0.5
CLN3-221ENST00000566057 AMN1Q8IY45 258 aa11.91□□□□□ -0.5
CLN3-221ENST00000566057 MYCBP2O75592 4640 aa11.9□□□□□ -0.5
CLN3-221ENST00000566057 DMBT1Q9UGM3 2413 aaPredicted RBP11.9□□□□□ -0.5
CLN3-221ENST00000566057 APCSP02743 223 aa11.9□□□□□ -0.5
CLN3-221ENST00000566057 RIGQ13278 110 aa11.9□□□□□ -0.5
CLN3-221ENST00000566057 CHAC1Q9BUX1 264 aa11.9□□□□□ -0.5
CLN3-221ENST00000566057 SMDT1Q9H4I9 107 aa11.9□□□□□ -0.5
CLN3-221ENST00000566057 ST20Q9HBF5 79 aa11.9□□□□□ -0.5
CLN3-221ENST00000566057 TSHBP01222 138 aa11.89□□□□□ -0.51
CLN3-221ENST00000566057 DGAT2L7PQ6IED9 249 aa11.89□□□□□ -0.51
CLN3-221ENST00000566057 NAT8BQ9UHF3 227 aa11.89□□□□□ -0.51
CLN3-221ENST00000566057 IGKV3OR2-268A0A0C4DH90 116 aa11.88□□□□□ -0.51
CLN3-221ENST00000566057 SMIM27A0A1W2PRY6 76 aa11.88□□□□□ -0.51
CLN3-221ENST00000566057 SMKR1H3BMG3 65 aa11.88□□□□□ -0.51
CLN3-221ENST00000566057 H7C423 109 aa11.88□□□□□ -0.51
CLN3-221ENST00000566057 FGF6P10767 208 aa11.88□□□□□ -0.51
CLN3-221ENST00000566057 POLR2KP53803 58 aaKnown RBP11.88□□□□□ -0.51
CLN3-221ENST00000566057 AMMECR1LQ6DCA0 310 aa11.88□□□□□ -0.51
CLN3-221ENST00000566057 RNASEKQ6P5S7 137 aaKnown RBP11.88□□□□□ -0.51
CLN3-221ENST00000566057 LINC00528Q8N1L1 170 aa11.88□□□□□ -0.51
CLN3-221ENST00000566057 CIRBP-AS1Q8TBR5 109 aa11.88□□□□□ -0.51
CLN3-221ENST00000566057 MRAP2Q96G30 205 aa11.88□□□□□ -0.51
CLN3-221ENST00000566057 ESDP10768 282 aa11.87□□□□□ -0.51
CLN3-221ENST00000566057 C9orf163Q8N9P6 203 aa11.87□□□□□ -0.51
CLN3-221ENST00000566057 CLRN3Q8NCR9 226 aa11.87□□□□□ -0.51
CLN3-221ENST00000566057 TMEM242Q9NWH2 141 aa11.87□□□□□ -0.51
CLN3-221ENST00000566057 TRBV27A0A0K0K1C4 114 aa11.85□□□□□ -0.51
CLN3-221ENST00000566057 hDV102S1A0JD36 115 aa11.85□□□□□ -0.51
CLN3-221ENST00000566057 GAGE12HA6NDE8 117 aa11.85□□□□□ -0.51
CLN3-221ENST00000566057 NRACQ8N912 160 aa11.85□□□□□ -0.51
CLN3-221ENST00000566057 SLPIP03973 132 aa11.84□□□□□ -0.51
CLN3-221ENST00000566057 CAMPP49913 170 aa11.83□□□□□ -0.52
CLN3-221ENST00000566057 MRPL51Q4U2R6 128 aaKnown RBP11.83□□□□□ -0.52
CLN3-221ENST00000566057 FAM104BQ5XKR9 115 aa11.83□□□□□ -0.52
CLN3-221ENST00000566057 CHCHD10Q8WYQ3 142 aaPredicted RBP11.83□□□□□ -0.52
CLN3-221ENST00000566057 PLA2G1BP04054 148 aaKnown RBP11.82□□□□□ -0.52
CLN3-221ENST00000566057 ZNF25P17030 456 aaPredicted RBP11.82□□□□□ -0.52
CLN3-221ENST00000566057 CNBPP62633 177 aaKnown RBP11.82□□□□□ -0.52
CLN3-221ENST00000566057 SDIM1Q6ZPB5 146 aa11.82□□□□□ -0.52
CLN3-221ENST00000566057 C15orf56Q8N910 161 aa11.82□□□□□ -0.52
CLN3-221ENST00000566057 PANO1I0J062 215 aa11.81□□□□□ -0.52
CLN3-221ENST00000566057 VCYO14598 125 aa11.81□□□□□ -0.52
CLN3-221ENST00000566057 OR5A1Q8NGJ0 315 aa11.81□□□□□ -0.52
CLN3-221ENST00000566057 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.81□□□□□ -0.52
CLN3-221ENST00000566057 HERC1Q15751 4861 aa11.8□□□□□ -0.52
CLN3-221ENST00000566057 SUMO2P61956 95 aaKnown RBP11.8□□□□□ -0.52
CLN3-221ENST00000566057 TMEM101Q96IK0 257 aa11.8□□□□□ -0.52
CLN3-221ENST00000566057 BTF3L4Q96K17 158 aa11.8□□□□□ -0.52
CLN3-221ENST00000566057 A0A1B0GW15 77 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms