RNA–Protein interactions for RNA: ENST00000564846.1

CLN6-205, Transcript of CLN6, transmembrane ER protein, human

TSL 2

Gene CLN6, Length 1,762 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-205	ENST00000564846	RPL39	P62891	51 aa	Known RBP	13.88	□□□□□ -0.19
CLN6-205	ENST00000564846	FAM222A	Q5U5X8	452 aa		13.88	□□□□□ -0.19
CLN6-205	ENST00000564846	DKK2	Q9UBU2	259 aa		13.88	□□□□□ -0.19
CLN6-205	ENST00000564846		A0A087WX48	190 aa		13.87	□□□□□ -0.19
CLN6-205	ENST00000564846	COTL1	Q14019	142 aa		13.87	□□□□□ -0.19
CLN6-205	ENST00000564846	DAZ4	Q86SG3	579 aa	Known RBP	13.87	□□□□□ -0.19
CLN6-205	ENST00000564846	DAZ3	Q9NR90	486 aa	Known RBP	13.87	□□□□□ -0.19
CLN6-205	ENST00000564846	hDV102S1	A0JD36	115 aa		13.86	□□□□□ -0.19
CLN6-205	ENST00000564846	BAALC	Q8WXS3	180 aa		13.86	□□□□□ -0.19
CLN6-205	ENST00000564846	PHLDA1	Q8WV24	401 aa	Predicted RBP	13.86	□□□□□ -0.19
CLN6-205	ENST00000564846	PRADC1	Q9BSG0	188 aa		13.86	□□□□□ -0.19
CLN6-205	ENST00000564846	UBE2D3	P61077	147 aa		13.85	□□□□□ -0.19
CLN6-205	ENST00000564846	UBE2D2	P62837	147 aa		13.85	□□□□□ -0.19
CLN6-205	ENST00000564846	IGHV3-38	A0A0C4DH36	116 aa		13.84	□□□□□ -0.19
CLN6-205	ENST00000564846	GAGE12J	A6NER3	117 aa		13.84	□□□□□ -0.19
CLN6-205	ENST00000564846	LINC00587	B1AMM8	73 aa		13.84	□□□□□ -0.19
CLN6-205	ENST00000564846	DPM2	O94777	84 aa		13.84	□□□□□ -0.19
CLN6-205	ENST00000564846	GAGE1	Q13065	139 aa		13.84	□□□□□ -0.19
CLN6-205	ENST00000564846	GAGE4	Q13068	117 aa		13.84	□□□□□ -0.19
CLN6-205	ENST00000564846	GAGE5	Q13069	117 aa		13.84	□□□□□ -0.19
CLN6-205	ENST00000564846	GAGE13	Q4V321	117 aa		13.84	□□□□□ -0.19
CLN6-205	ENST00000564846	MDFI	Q99750	246 aa		13.84	□□□□□ -0.19
CLN6-205	ENST00000564846	MRPL35	Q9NZE8	188 aa	Known RBP	13.84	□□□□□ -0.19
CLN6-205	ENST00000564846	PKD1L1	Q8TDX9	2849 aa		13.84	□□□□□ -0.19
CLN6-205	ENST00000564846	DEFB4A	O15263	64 aa		13.83	□□□□□ -0.19
CLN6-205	ENST00000564846	IGKC	P01834	107 aa		13.83	□□□□□ -0.19
CLN6-205	ENST00000564846	MIEN1	Q9BRT3	115 aa		13.83	□□□□□ -0.19
CLN6-205	ENST00000564846	CHCHD7	Q9BUK0	85 aa		13.83	□□□□□ -0.19
CLN6-205	ENST00000564846		F8VRH5	84 aa		13.83	□□□□□ -0.2
CLN6-205	ENST00000564846	IGLC3	P0DOY3	106 aa		13.83	□□□□□ -0.2
CLN6-205	ENST00000564846	HHLA3	Q9XRX5	114 aa		13.83	□□□□□ -0.2
CLN6-205	ENST00000564846	PYGO1	Q9Y3Y4	419 aa		13.83	□□□□□ -0.2
CLN6-205	ENST00000564846	SPART-AS1	P0CW21	52 aa		13.82	□□□□□ -0.2
CLN6-205	ENST00000564846	PLN	P26678	52 aa		13.82	□□□□□ -0.2
CLN6-205	ENST00000564846	CHTOP	Q9Y3Y2	248 aa	Known RBP	13.82	□□□□□ -0.2
CLN6-205	ENST00000564846	DNAH3	Q8TD57	4116 aa		13.81	□□□□□ -0.2
CLN6-205	ENST00000564846	PRSS29P	A6NIE9	313 aa		13.81	□□□□□ -0.2
CLN6-205	ENST00000564846	PMVK	Q15126	192 aa		13.81	□□□□□ -0.2
CLN6-205	ENST00000564846	UQCR10	Q9UDW1	63 aa		13.81	□□□□□ -0.2
CLN6-205	ENST00000564846	NBEAL2	Q6ZNJ1	2754 aa		13.81	□□□□□ -0.2
CLN6-205	ENST00000564846	DAD1	P61803	113 aa		13.81	□□□□□ -0.2
CLN6-205	ENST00000564846	NPS	P0C0P6	89 aa		13.8	□□□□□ -0.2
CLN6-205	ENST00000564846	PAPPA-AS1	Q5QFB9	102 aa		13.8	□□□□□ -0.2
CLN6-205	ENST00000564846	TEX48	A0A1B0GUV7	120 aa		13.79	□□□□□ -0.2
CLN6-205	ENST00000564846	GTSF1L	Q9H1H1	148 aa		13.79	□□□□□ -0.2
CLN6-205	ENST00000564846	CST9L	Q9H4G1	147 aa		13.79	□□□□□ -0.2
CLN6-205	ENST00000564846	PRO0255	Q9UI72	69 aa		13.79	□□□□□ -0.2
CLN6-205	ENST00000564846	LOC100131303	A0A0U1RQF7	123 aa		13.78	□□□□□ -0.2
CLN6-205	ENST00000564846	CRYBA4	P53673	196 aa		13.78	□□□□□ -0.2
CLN6-205	ENST00000564846	STPG4	Q8N801	248 aa		13.78	□□□□□ -0.2
CLN6-205	ENST00000564846	C14orf144	Q96I85	54 aa		13.78	□□□□□ -0.2
CLN6-205	ENST00000564846	SPANXA1	Q9NS26	97 aa		13.78	□□□□□ -0.2
CLN6-205	ENST00000564846	CELA1	Q9UNI1	258 aa		13.78	□□□□□ -0.2
CLN6-205	ENST00000564846	IGLV4-3	A0A075B6K6	122 aa		13.77	□□□□□ -0.21
CLN6-205	ENST00000564846	LINC00694	P0DN24	101 aa		13.77	□□□□□ -0.21
CLN6-205	ENST00000564846	UBE2D4	Q9Y2X8	147 aa		13.77	□□□□□ -0.21
CLN6-205	ENST00000564846	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	13.76	□□□□□ -0.21
CLN6-205	ENST00000564846	IGKV2-29	A2NJV5	120 aa	Predicted RBP	13.76	□□□□□ -0.21
CLN6-205	ENST00000564846	ATP5G1	P05496	136 aa		13.76	□□□□□ -0.21
CLN6-205	ENST00000564846	DEFA6	Q01524	100 aa		13.76	□□□□□ -0.21
CLN6-205	ENST00000564846	ANKRD39	Q53RE8	183 aa		13.76	□□□□□ -0.21
CLN6-205	ENST00000564846	NTM-AS1	Q6ZSK4	140 aa		13.76	□□□□□ -0.21
CLN6-205	ENST00000564846	VCX2	Q9H322	139 aa		13.76	□□□□□ -0.21
CLN6-205	ENST00000564846	KPRP	Q5T749	579 aa	Predicted RBP	13.76	□□□□□ -0.21
CLN6-205	ENST00000564846	OPRPN	Q99935	248 aa	Predicted RBP	13.76	□□□□□ -0.21
CLN6-205	ENST00000564846	ZC2HC1B	Q5TFG8	222 aa		13.75	□□□□□ -0.21
CLN6-205	ENST00000564846	TIMM21	Q9BVV7	248 aa		13.75	□□□□□ -0.21
CLN6-205	ENST00000564846	RETN	Q9HD89	108 aa		13.75	□□□□□ -0.21
CLN6-205	ENST00000564846	TMEM97	Q5BJF2	176 aa		13.74	□□□□□ -0.21
CLN6-205	ENST00000564846	GYPE	P15421	78 aa		13.73	□□□□□ -0.21
CLN6-205	ENST00000564846	IGLV4-69	A0A075B6H9	119 aa		13.73	□□□□□ -0.21
CLN6-205	ENST00000564846	PAX4	O43316	350 aa		13.73	□□□□□ -0.21
CLN6-205	ENST00000564846	COX8A	P10176	69 aa		13.73	□□□□□ -0.21
CLN6-205	ENST00000564846	SMAGP	Q0VAQ4	97 aa		13.73	□□□□□ -0.21
CLN6-205	ENST00000564846	SLC25A34	Q6PIV7	304 aa		13.73	□□□□□ -0.21
CLN6-205	ENST00000564846	AMELX	Q99217	191 aa		13.73	□□□□□ -0.21
CLN6-205	ENST00000564846	TRBV25-1	A0A075B6N4	114 aa		13.72	□□□□□ -0.21
CLN6-205	ENST00000564846	CEMP1	Q6PRD7	247 aa	Predicted RBP	13.72	□□□□□ -0.21
CLN6-205	ENST00000564846	SBSPON	Q8IVN8	264 aa		13.72	□□□□□ -0.21
CLN6-205	ENST00000564846	FAM104A	Q969W3	186 aa		13.72	□□□□□ -0.21
CLN6-205	ENST00000564846	C11orf68	Q9H3H3	251 aa	Known RBP	13.72	□□□□□ -0.21
CLN6-205	ENST00000564846	HNRNPA3	P51991	378 aa	Known RBP	13.71	□□□□□ -0.21
CLN6-205	ENST00000564846	MRPS36	P82909	103 aa	Known RBP	13.71	□□□□□ -0.21
CLN6-205	ENST00000564846	TMEM243	Q9BU79	118 aa		13.71	□□□□□ -0.21
CLN6-205	ENST00000564846		H7C423	109 aa		13.71	□□□□□ -0.22
CLN6-205	ENST00000564846	DGAT2L7P	Q6IED9	249 aa		13.71	□□□□□ -0.22
CLN6-205	ENST00000564846	MRPL52	Q86TS9	123 aa	Known RBP	13.71	□□□□□ -0.22
CLN6-205	ENST00000564846	CSDC2	Q9Y534	153 aa	Known RBP	13.71	□□□□□ -0.22
CLN6-205	ENST00000564846		K7EIL1	84 aa		13.7	□□□□□ -0.22
CLN6-205	ENST00000564846	ATP6V0E2	Q8NHE4	81 aa		13.7	□□□□□ -0.22
CLN6-205	ENST00000564846	TRBV6-8	A0A0A6YYG3	113 aa		13.69	□□□□□ -0.22
CLN6-205	ENST00000564846	C11orf86	A6NJI1	115 aa		13.69	□□□□□ -0.22
CLN6-205	ENST00000564846		F5H768	121 aa		13.69	□□□□□ -0.22
CLN6-205	ENST00000564846	PRB2	P02812	416 aa	Predicted RBP	13.69	□□□□□ -0.22
CLN6-205	ENST00000564846	FGF6	P10767	208 aa		13.69	□□□□□ -0.22
CLN6-205	ENST00000564846	NMU	P48645	174 aa		13.69	□□□□□ -0.22
CLN6-205	ENST00000564846	TCTA	P57738	103 aa		13.69	□□□□□ -0.22
CLN6-205	ENST00000564846	UBE2L6	O14933	153 aa		13.68	□□□□□ -0.22
CLN6-205	ENST00000564846	NFE4	Q86UQ8	179 aa		13.68	□□□□□ -0.22
CLN6-205	ENST00000564846	VSIG2	Q96IQ7	327 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms