RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MANBALQ9NQG1 85 aa10.68□□□□□ -0.7
CLN3-211ENST00000564091 NIT2Q9NQR4 276 aa10.68□□□□□ -0.7
CLN3-211ENST00000564091 GAGE12HA6NDE8 117 aa10.67□□□□□ -0.7
CLN3-211ENST00000564091 NTF3P20783 257 aa10.67□□□□□ -0.7
CLN3-211ENST00000564091 AMTP48728 403 aa10.67□□□□□ -0.7
CLN3-211ENST00000564091 RNF185Q96GF1 192 aa10.67□□□□□ -0.7
CLN3-211ENST00000564091 PGLYRP4Q96LB8 373 aa10.67□□□□□ -0.7
CLN3-211ENST00000564091 DPH3P1Q9H4G8 78 aa10.67□□□□□ -0.7
CLN3-211ENST00000564091 IGKV3OR2-268A0A0C4DH90 116 aa10.66□□□□□ -0.7
CLN3-211ENST00000564091 F2Z2F3 143 aa10.66□□□□□ -0.7
CLN3-211ENST00000564091 IFNA1P01562 189 aa10.66□□□□□ -0.7
CLN3-211ENST00000564091 TRGC1P0CF51 173 aa10.66□□□□□ -0.7
CLN3-211ENST00000564091 GNG4P50150 75 aa10.66□□□□□ -0.7
CLN3-211ENST00000564091 COTL1Q14019 142 aa10.66□□□□□ -0.7
CLN3-211ENST00000564091 WDR73Q6P4I2 378 aa10.66□□□□□ -0.7
CLN3-211ENST00000564091 C15orf56Q8N910 161 aa10.66□□□□□ -0.7
CLN3-211ENST00000564091 PLAC8Q9NZF1 115 aa10.66□□□□□ -0.7
CLN3-211ENST00000564091 XKRY2A2RUG3 117 aa10.65□□□□□ -0.7
CLN3-211ENST00000564091 PHOX2AO14813 284 aa10.65□□□□□ -0.7
CLN3-211ENST00000564091 EIF5AP63241 154 aaKnown RBP10.65□□□□□ -0.7
CLN3-211ENST00000564091 COX6A2Q02221 97 aa10.65□□□□□ -0.7
CLN3-211ENST00000564091 HIGD2BQ4VC39 106 aa10.65□□□□□ -0.7
CLN3-211ENST00000564091 TRAV1-1A0A0B4J248 108 aa10.64□□□□□ -0.71
CLN3-211ENST00000564091 TRBV20OR9-2A0A075B6H5 130 aa10.63□□□□□ -0.71
CLN3-211ENST00000564091 TRAV26-2A0A0B4J265 109 aa10.63□□□□□ -0.71
CLN3-211ENST00000564091 CFAP161Q6P656 301 aa10.63□□□□□ -0.71
CLN3-211ENST00000564091 C9orf62Q8N4C0 152 aa10.63□□□□□ -0.71
CLN3-211ENST00000564091 PRSS3P2Q8NHM4 247 aa10.63□□□□□ -0.71
CLN3-211ENST00000564091 MED9Q9NWA0 146 aa10.63□□□□□ -0.71
CLN3-211ENST00000564091 IGKV2-24A0A0C4DH68 120 aa10.62□□□□□ -0.71
CLN3-211ENST00000564091 RPS10P46783 165 aaKnown RBP10.62□□□□□ -0.71
CLN3-211ENST00000564091 TWIST1Q15672 202 aa10.62□□□□□ -0.71
CLN3-211ENST00000564091 MAJINQ3KP22 176 aa10.62□□□□□ -0.71
CLN3-211ENST00000564091 GATD1Q8NB37 220 aa10.62□□□□□ -0.71
CLN3-211ENST00000564091 NUDT10Q8NFP7 164 aa10.62□□□□□ -0.71
CLN3-211ENST00000564091 C7orf33Q8WU49 177 aa10.62□□□□□ -0.71
CLN3-211ENST00000564091 GTSF1Q8WW33 167 aa10.62□□□□□ -0.71
CLN3-211ENST00000564091 SMIM12Q96EX1 92 aa10.62□□□□□ -0.71
CLN3-211ENST00000564091 NUDT11Q96G61 164 aa10.62□□□□□ -0.71
CLN3-211ENST00000564091 CTRLP40313 264 aa10.61□□□□□ -0.71
CLN3-211ENST00000564091 MEF2BQ02080 365 aaPredicted RBP10.61□□□□□ -0.71
CLN3-211ENST00000564091 Q6ZNX1 250 aa10.61□□□□□ -0.71
CLN3-211ENST00000564091 CHCHD10Q8WYQ3 142 aaPredicted RBP10.61□□□□□ -0.71
CLN3-211ENST00000564091 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.6□□□□□ -0.71
CLN3-211ENST00000564091 IGKV2-29A2NJV5 120 aaPredicted RBP10.6□□□□□ -0.71
CLN3-211ENST00000564091 PDE6DO43924 150 aa10.6□□□□□ -0.71
CLN3-211ENST00000564091 NDUFS6O75380 124 aaKnown RBP10.6□□□□□ -0.71
CLN3-211ENST00000564091 AMMECR1LQ6DCA0 310 aa10.6□□□□□ -0.71
CLN3-211ENST00000564091 RNASEKQ6P5S7 137 aaKnown RBP10.6□□□□□ -0.71
CLN3-211ENST00000564091 LYPD6BQ8NI32 183 aa10.6□□□□□ -0.71
CLN3-211ENST00000564091 TEX46H3BTG2 121 aa10.59□□□□□ -0.71
CLN3-211ENST00000564091 FOXA3P55318 350 aaPredicted RBP10.59□□□□□ -0.71
CLN3-211ENST00000564091 ODF1Q14990 250 aa10.59□□□□□ -0.71
CLN3-211ENST00000564091 RPL39LQ96EH5 51 aaKnown RBP10.59□□□□□ -0.71
CLN3-211ENST00000564091 BIN3Q9NQY0 253 aa10.59□□□□□ -0.71
CLN3-211ENST00000564091 STPG4Q8N801 248 aa10.58□□□□□ -0.72
CLN3-211ENST00000564091 CNFNQ9BYD5 112 aa10.58□□□□□ -0.72
CLN3-211ENST00000564091 RNASE7Q9H1E1 156 aaKnown RBP10.58□□□□□ -0.72
CLN3-211ENST00000564091 BCL2P10415 239 aa10.57□□□□□ -0.72
CLN3-211ENST00000564091 PRR3P79522 188 aaKnown RBP10.57□□□□□ -0.72
CLN3-211ENST00000564091 RPP21Q9H633 154 aaKnown RBP10.57□□□□□ -0.72
CLN3-211ENST00000564091 GVQW2A0A096LPI5 108 aaPredicted RBP10.56□□□□□ -0.72
CLN3-211ENST00000564091 APCSP02743 223 aa10.56□□□□□ -0.72
CLN3-211ENST00000564091 FGF6P10767 208 aa10.56□□□□□ -0.72
CLN3-211ENST00000564091 FOXI1Q12951 378 aa10.56□□□□□ -0.72
CLN3-211ENST00000564091 EIF5AL1Q6IS14 154 aaKnown RBP10.56□□□□□ -0.72
CLN3-211ENST00000564091 LINC01600Q96MT4 127 aa10.56□□□□□ -0.72
CLN3-211ENST00000564091 A0A096LNI7 61 aa10.55□□□□□ -0.72
CLN3-211ENST00000564091 K7EN84 100 aa10.55□□□□□ -0.72
CLN3-211ENST00000564091 NCR2O95944 276 aa10.55□□□□□ -0.72
CLN3-211ENST00000564091 OCC1Q8TAD7 63 aa10.55□□□□□ -0.72
CLN3-211ENST00000564091 LINC00526Q96FQ7 95 aa10.55□□□□□ -0.72
CLN3-211ENST00000564091 SDHAF1A6NFY7 115 aa10.54□□□□□ -0.72
CLN3-211ENST00000564091 XCL1P47992 114 aa10.54□□□□□ -0.72
CLN3-211ENST00000564091 H7C423 109 aa10.53□□□□□ -0.72
CLN3-211ENST00000564091 SMIM15Q7Z3B0 74 aa10.53□□□□□ -0.72
CLN3-211ENST00000564091 FAM231BA6NCW3 169 aa10.52□□□□□ -0.73
CLN3-211ENST00000564091 OR5A1Q8NGJ0 315 aa10.52□□□□□ -0.73
CLN3-211ENST00000564091 CCL25O15444 150 aa10.51□□□□□ -0.73
CLN3-211ENST00000564091 GAS8-AS1O95177 125 aa10.51□□□□□ -0.73
CLN3-211ENST00000564091 PMCHP20382 165 aa10.51□□□□□ -0.73
CLN3-211ENST00000564091 LINC00959A0A1B0GUT2 108 aa10.5□□□□□ -0.73
CLN3-211ENST00000564091 I3L3M4 83 aa10.5□□□□□ -0.73
CLN3-211ENST00000564091 TEX261Q6UWH6 196 aa10.5□□□□□ -0.73
CLN3-211ENST00000564091 TMEM101Q96IK0 257 aa10.5□□□□□ -0.73
CLN3-211ENST00000564091 BTF3L4Q96K17 158 aa10.5□□□□□ -0.73
CLN3-211ENST00000564091 IGHV1-58A0A0C4DH39 117 aa10.49□□□□□ -0.73
CLN3-211ENST00000564091 A0A0J9YXV3 536 aa10.49□□□□□ -0.73
CLN3-211ENST00000564091 ZNF25P17030 456 aaPredicted RBP10.49□□□□□ -0.73
CLN3-211ENST00000564091 LINC00474Q9P2X8 69 aa10.49□□□□□ -0.73
CLN3-211ENST00000564091 GATCO43716 136 aaKnown RBP10.48□□□□□ -0.73
CLN3-211ENST00000564091 ESDP10768 282 aa10.48□□□□□ -0.73
CLN3-211ENST00000564091 KRTAP10-8P60410 259 aa10.48□□□□□ -0.73
CLN3-211ENST00000564091 SPINK6Q6UWN8 80 aa10.48□□□□□ -0.73
CLN3-211ENST00000564091 CARD19Q96LW7 228 aa10.48□□□□□ -0.73
CLN3-211ENST00000564091 TMEM242Q9NWH2 141 aa10.48□□□□□ -0.73
CLN3-211ENST00000564091 TRBV6-5A0A0K0K1A5 114 aa10.47□□□□□ -0.73
CLN3-211ENST00000564091 TSHBP01222 138 aa10.47□□□□□ -0.73
CLN3-211ENST00000564091 TAGLN2P37802 199 aaKnown RBP10.47□□□□□ -0.73
CLN3-211ENST00000564091 SRSF9Q13242 221 aaKnown RBP eCLIP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms