RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 IGLV4-60A0A075B6I1 120 aa11.07□□□□□ -0.64
VPS9D1-203ENST00000563798 OXTP01178 125 aa11.07□□□□□ -0.64
VPS9D1-203ENST00000563798 RPP21Q9H633 154 aaKnown RBP11.07□□□□□ -0.64
VPS9D1-203ENST00000563798 UBR4Q5T4S7 5183 aa11.07□□□□□ -0.64
VPS9D1-203ENST00000563798 OCC1Q8TAD7 63 aa11.06□□□□□ -0.64
VPS9D1-203ENST00000563798 GFRA4Q9GZZ7 299 aa11.06□□□□□ -0.64
VPS9D1-203ENST00000563798 IGLV10-54A0A075B6I4 117 aa11.05□□□□□ -0.64
VPS9D1-203ENST00000563798 K7EN84 100 aa11.05□□□□□ -0.64
VPS9D1-203ENST00000563798 CIRBPQ14011 172 aaKnown RBP11.05□□□□□ -0.64
VPS9D1-203ENST00000563798 COTL1Q14019 142 aa11.05□□□□□ -0.64
VPS9D1-203ENST00000563798 TWIST1Q15672 202 aa11.05□□□□□ -0.64
VPS9D1-203ENST00000563798 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.05□□□□□ -0.64
VPS9D1-203ENST00000563798 GATD1Q8NB37 220 aa11.04□□□□□ -0.64
VPS9D1-203ENST00000563798 RNASE7Q9H1E1 156 aaKnown RBP11.04□□□□□ -0.64
VPS9D1-203ENST00000563798 FAT3Q8TDW7 4589 aa11.04□□□□□ -0.64
VPS9D1-203ENST00000563798 TMEM250H0YL14 139 aa11.03□□□□□ -0.64
VPS9D1-203ENST00000563798 PANO1I0J062 215 aa11.03□□□□□ -0.64
VPS9D1-203ENST00000563798 AMTP48728 403 aa11.03□□□□□ -0.64
VPS9D1-203ENST00000563798 RPL37AP61513 92 aaKnown RBP11.03□□□□□ -0.64
VPS9D1-203ENST00000563798 GTSF1Q8WW33 167 aa11.03□□□□□ -0.64
VPS9D1-203ENST00000563798 UBE2L6O14933 153 aa11.02□□□□□ -0.65
VPS9D1-203ENST00000563798 NCR2O95944 276 aa11.02□□□□□ -0.65
VPS9D1-203ENST00000563798 FAM231DQ6ZW35 169 aa11.02□□□□□ -0.65
VPS9D1-203ENST00000563798 LYPD6BQ8NI32 183 aa11.02□□□□□ -0.65
VPS9D1-203ENST00000563798 hDV102S1A0JD36 115 aa11.01□□□□□ -0.65
VPS9D1-203ENST00000563798 SLPIP03973 132 aa11.01□□□□□ -0.65
VPS9D1-203ENST00000563798 TEX261Q6UWH6 196 aa11.01□□□□□ -0.65
VPS9D1-203ENST00000563798 Q6ZNX1 250 aa11.01□□□□□ -0.65
VPS9D1-203ENST00000563798 H7C423 109 aa11□□□□□ -0.65
VPS9D1-203ENST00000563798 FOXA3P55318 350 aaPredicted RBP11□□□□□ -0.65
VPS9D1-203ENST00000563798 AP5S1Q9NUS5 200 aa11□□□□□ -0.65
VPS9D1-203ENST00000563798 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.99□□□□□ -0.65
VPS9D1-203ENST00000563798 TRAV26-2A0A0B4J265 109 aa10.99□□□□□ -0.65
VPS9D1-203ENST00000563798 BLOC1S1P78537 153 aa10.99□□□□□ -0.65
VPS9D1-203ENST00000563798 SERTAD4-AS1Q5TG53 156 aa10.99□□□□□ -0.65
VPS9D1-203ENST00000563798 SMIM15Q7Z3B0 74 aa10.99□□□□□ -0.65
VPS9D1-203ENST00000563798 RNF185Q96GF1 192 aa10.99□□□□□ -0.65
VPS9D1-203ENST00000563798 PKHD1L1Q86WI1 4243 aa10.99□□□□□ -0.65
VPS9D1-203ENST00000563798 HMCN2Q8NDA2 5059 aa10.98□□□□□ -0.65
VPS9D1-203ENST00000563798 IGHV3-64A0A075B6Q5 118 aa10.98□□□□□ -0.65
VPS9D1-203ENST00000563798 A8MWL6 223 aa10.98□□□□□ -0.65
VPS9D1-203ENST00000563798 NDUFS6O75380 124 aaKnown RBP10.98□□□□□ -0.65
VPS9D1-203ENST00000563798 CT83Q5H943 113 aa10.98□□□□□ -0.65
VPS9D1-203ENST00000563798 TRBV6-5A0A0K0K1A5 114 aa10.97□□□□□ -0.65
VPS9D1-203ENST00000563798 GATCO43716 136 aaKnown RBP10.97□□□□□ -0.65
VPS9D1-203ENST00000563798 HNRNPA3P51991 378 aaKnown RBP10.97□□□□□ -0.65
VPS9D1-203ENST00000563798 CFAP161Q6P656 301 aa10.97□□□□□ -0.65
VPS9D1-203ENST00000563798 C15orf56Q8N910 161 aa10.97□□□□□ -0.65
VPS9D1-203ENST00000563798 RPL39LQ96EH5 51 aaKnown RBP10.97□□□□□ -0.65
VPS9D1-203ENST00000563798 FAM210AQ96ND0 272 aa10.97□□□□□ -0.65
VPS9D1-203ENST00000563798 GAGE12HA6NDE8 117 aa10.96□□□□□ -0.65
VPS9D1-203ENST00000563798 SDHAF1A6NFY7 115 aa10.96□□□□□ -0.65
VPS9D1-203ENST00000563798 APCSP02743 223 aa10.95□□□□□ -0.66
VPS9D1-203ENST00000563798 ALKAL2Q6UX46 152 aa10.95□□□□□ -0.66
VPS9D1-203ENST00000563798 AKAP14Q86UN6 197 aa10.95□□□□□ -0.66
VPS9D1-203ENST00000563798 SPACA4Q8TDM5 124 aa10.95□□□□□ -0.66
VPS9D1-203ENST00000563798 FAM231BA6NCW3 169 aa10.94□□□□□ -0.66
VPS9D1-203ENST00000563798 FGF6P10767 208 aa10.94□□□□□ -0.66
VPS9D1-203ENST00000563798 ZNF25P17030 456 aaPredicted RBP10.94□□□□□ -0.66
VPS9D1-203ENST00000563798 AMMECR1LQ6DCA0 310 aa10.94□□□□□ -0.66
VPS9D1-203ENST00000563798 CHCHD10Q8WYQ3 142 aaPredicted RBP10.94□□□□□ -0.66
VPS9D1-203ENST00000563798 I3L3M4 83 aa10.93□□□□□ -0.66
VPS9D1-203ENST00000563798 ESDP10768 282 aa10.93□□□□□ -0.66
VPS9D1-203ENST00000563798 PLAC8Q9NZF1 115 aa10.93□□□□□ -0.66
VPS9D1-203ENST00000563798 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.92□□□□□ -0.66
VPS9D1-203ENST00000563798 A0A087WYN8 130 aa10.92□□□□□ -0.66
VPS9D1-203ENST00000563798 GVQW2A0A096LPI5 108 aaPredicted RBP10.92□□□□□ -0.66
VPS9D1-203ENST00000563798 IGKV2-29A2NJV5 120 aaPredicted RBP10.92□□□□□ -0.66
VPS9D1-203ENST00000563798 RPS10P46783 165 aaKnown RBP10.92□□□□□ -0.66
VPS9D1-203ENST00000563798 TMEM191AQ9H0A3 160 aa10.92□□□□□ -0.66
VPS9D1-203ENST00000563798 CHTF8P0CG12 524 aa10.91□□□□□ -0.66
VPS9D1-203ENST00000563798 RNASEKQ6P5S7 137 aaKnown RBP10.91□□□□□ -0.66
VPS9D1-203ENST00000563798 Q6ZRU5 148 aa10.91□□□□□ -0.66
VPS9D1-203ENST00000563798 LINC01551Q86U37 167 aa10.91□□□□□ -0.66
VPS9D1-203ENST00000563798 OR5A1Q8NGJ0 315 aa10.91□□□□□ -0.66
VPS9D1-203ENST00000563798 TSKUQ8WUA8 353 aa10.91□□□□□ -0.66
VPS9D1-203ENST00000563798 IGKV3OR2-268A0A0C4DH90 116 aa10.9□□□□□ -0.66
VPS9D1-203ENST00000563798 A0A1B0GUT8 65 aa10.9□□□□□ -0.66
VPS9D1-203ENST00000563798 PMCHP20382 165 aa10.9□□□□□ -0.66
VPS9D1-203ENST00000563798 POLR2KP53803 58 aaKnown RBP10.9□□□□□ -0.66
VPS9D1-203ENST00000563798 FOXI1Q12951 378 aa10.9□□□□□ -0.66
VPS9D1-203ENST00000563798 BORCS7Q96B45 105 aa10.9□□□□□ -0.66
VPS9D1-203ENST00000563798 SMIM7Q9BQ49 75 aa10.9□□□□□ -0.66
VPS9D1-203ENST00000563798 OSTCQ9NRP0 149 aa10.9□□□□□ -0.66
VPS9D1-203ENST00000563798 HIGD1CA8MV81 97 aa10.89□□□□□ -0.67
VPS9D1-203ENST00000563798 GAS8-AS1O95177 125 aa10.89□□□□□ -0.67
VPS9D1-203ENST00000563798 TSHBP01222 138 aa10.89□□□□□ -0.67
VPS9D1-203ENST00000563798 MRPL52Q86TS9 123 aaKnown RBP10.89□□□□□ -0.67
VPS9D1-203ENST00000563798 DPH3Q96FX2 82 aa10.89□□□□□ -0.67
VPS9D1-203ENST00000563798 ST20Q9HBF5 79 aa10.89□□□□□ -0.67
VPS9D1-203ENST00000563798 TRBV27A0A0K0K1C4 114 aa10.88□□□□□ -0.67
VPS9D1-203ENST00000563798 COX6A2Q02221 97 aa10.88□□□□□ -0.67
VPS9D1-203ENST00000563798 HIGD2BQ4VC39 106 aa10.88□□□□□ -0.67
VPS9D1-203ENST00000563798 MRAP2Q96G30 205 aa10.88□□□□□ -0.67
VPS9D1-203ENST00000563798 TMEM101Q96IK0 257 aa10.88□□□□□ -0.67
VPS9D1-203ENST00000563798 BTF3L4Q96K17 158 aa10.88□□□□□ -0.67
VPS9D1-203ENST00000563798 EIF5A2Q9GZV4 153 aaKnown RBP10.88□□□□□ -0.67
VPS9D1-203ENST00000563798 LINC00959A0A1B0GUT2 108 aa10.87□□□□□ -0.67
VPS9D1-203ENST00000563798 MT1HL1P0DM35 61 aa10.87□□□□□ -0.67
VPS9D1-203ENST00000563798 RAB4AP20338 218 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms