RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 COX11Q9Y6N1 276 aa13.7□□□□□ -0.22
SMPD3-203ENST00000563226 IGLV4-3A0A075B6K6 122 aa13.7□□□□□ -0.22
SMPD3-203ENST00000563226 FAM104AQ969W3 186 aa13.7□□□□□ -0.22
SMPD3-203ENST00000563226 C1QTNF4Q9BXJ3 329 aa13.7□□□□□ -0.22
SMPD3-203ENST00000563226 CEMP1Q6PRD7 247 aaPredicted RBP13.69□□□□□ -0.22
SMPD3-203ENST00000563226 C16orf74Q96GX8 76 aa13.69□□□□□ -0.22
SMPD3-203ENST00000563226 DNAJC30Q96LL9 226 aa13.69□□□□□ -0.22
SMPD3-203ENST00000563226 CHCHD7Q9BUK0 85 aa13.69□□□□□ -0.22
SMPD3-203ENST00000563226 CHAC1Q9BUX1 264 aa13.69□□□□□ -0.22
SMPD3-203ENST00000563226 HIGD1BQ9P298 99 aa13.69□□□□□ -0.22
SMPD3-203ENST00000563226 E9PLD3 99 aa13.68□□□□□ -0.22
SMPD3-203ENST00000563226 DAZ2Q13117 558 aaKnown RBP13.68□□□□□ -0.22
SMPD3-203ENST00000563226 PRADC1Q9BSG0 188 aa13.68□□□□□ -0.22
SMPD3-203ENST00000563226 OR11H2Q8NH07 326 aa13.68□□□□□ -0.22
SMPD3-203ENST00000563226 ORAOV1Q8WV07 137 aa13.68□□□□□ -0.22
SMPD3-203ENST00000563226 CITED1Q99966 193 aa13.68□□□□□ -0.22
SMPD3-203ENST00000563226 TRAV4A0A0B4J268 109 aa13.67□□□□□ -0.22
SMPD3-203ENST00000563226 ATRQ13535 2644 aa13.67□□□□□ -0.22
SMPD3-203ENST00000563226 NPSP0C0P6 89 aa13.67□□□□□ -0.22
SMPD3-203ENST00000563226 RRN3P1Q2M238 152 aa13.67□□□□□ -0.22
SMPD3-203ENST00000563226 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.66□□□□□ -0.22
SMPD3-203ENST00000563226 IGKV2-29A2NJV5 120 aaPredicted RBP13.66□□□□□ -0.22
SMPD3-203ENST00000563226 SEC11AP67812 179 aa13.66□□□□□ -0.22
SMPD3-203ENST00000563226 TRRAPQ9Y4A5 3859 aa13.66□□□□□ -0.22
SMPD3-203ENST00000563226 TEP1Q99973 2627 aaKnown RBP13.66□□□□□ -0.22
SMPD3-203ENST00000563226 F8P00451 2351 aa13.66□□□□□ -0.22
SMPD3-203ENST00000563226 GAGE12BA1L429 117 aa13.65□□□□□ -0.22
SMPD3-203ENST00000563226 GAGE7O76087 117 aa13.65□□□□□ -0.22
SMPD3-203ENST00000563226 GAGE12FP0CL80 117 aa13.65□□□□□ -0.22
SMPD3-203ENST00000563226 GAGE12GP0CL81 117 aa13.65□□□□□ -0.22
SMPD3-203ENST00000563226 GAGE12IP0CL82 117 aa13.65□□□□□ -0.22
SMPD3-203ENST00000563226 PAPPA-AS1Q5QFB9 102 aa13.65□□□□□ -0.22
SMPD3-203ENST00000563226 C9orf66Q5T8R8 295 aa13.65□□□□□ -0.22
SMPD3-203ENST00000563226 K7EP13 123 aa13.65□□□□□ -0.22
SMPD3-203ENST00000563226 PYGO1Q9Y3Y4 419 aa13.65□□□□□ -0.22
SMPD3-203ENST00000563226 MYMXA0A1B0GTQ4 84 aa13.64□□□□□ -0.23
SMPD3-203ENST00000563226 K7EQD1 137 aa13.64□□□□□ -0.23
SMPD3-203ENST00000563226 INSL3P51460 131 aa13.64□□□□□ -0.23
SMPD3-203ENST00000563226 RNASE13Q5GAN3 156 aaKnown RBP13.64□□□□□ -0.23
SMPD3-203ENST00000563226 TMEM170BQ5T4T1 132 aa13.64□□□□□ -0.23
SMPD3-203ENST00000563226 GAGE1Q13065 139 aa13.63□□□□□ -0.23
SMPD3-203ENST00000563226 COTL1Q14019 142 aa13.63□□□□□ -0.23
SMPD3-203ENST00000563226 SLC25A29Q8N8R3 303 aa13.63□□□□□ -0.23
SMPD3-203ENST00000563226 VCX2Q9H322 139 aa13.63□□□□□ -0.23
SMPD3-203ENST00000563226 GCSHP23434 173 aa13.63□□□□□ -0.23
SMPD3-203ENST00000563226 FXYD2P54710 66 aa13.63□□□□□ -0.23
SMPD3-203ENST00000563226 NFE4Q86UQ8 179 aa13.63□□□□□ -0.23
SMPD3-203ENST00000563226 OVOL2Q9BRP0 275 aa13.63□□□□□ -0.23
SMPD3-203ENST00000563226 UBE2D4Q9Y2X8 147 aa13.63□□□□□ -0.23
SMPD3-203ENST00000563226 FLNBO75369 2602 aaKnown RBP13.62□□□□□ -0.23
SMPD3-203ENST00000563226 TRBV7-3A0A075B6L6 115 aa13.62□□□□□ -0.23
SMPD3-203ENST00000563226 TRGV2A0A075B6R0 118 aa13.62□□□□□ -0.23
SMPD3-203ENST00000563226 A0A0J9YXV3 536 aa13.62□□□□□ -0.23
SMPD3-203ENST00000563226 TSPEAR-AS2P59090 65 aa13.62□□□□□ -0.23
SMPD3-203ENST00000563226 AMELXQ99217 191 aa13.62□□□□□ -0.23
SMPD3-203ENST00000563226 TRBV10-1A0A0K0K1A3 114 aa13.6□□□□□ -0.23
SMPD3-203ENST00000563226 ZNF815PA8K554 130 aa13.6□□□□□ -0.23
SMPD3-203ENST00000563226 HERVK_113P61574 105 aa13.6□□□□□ -0.23
SMPD3-203ENST00000563226 PLEKHB2Q96CS7 222 aa13.6□□□□□ -0.23
SMPD3-203ENST00000563226 A6NDN8 102 aa13.59□□□□□ -0.23
SMPD3-203ENST00000563226 GAGE12JA6NER3 117 aa13.59□□□□□ -0.23
SMPD3-203ENST00000563226 ZNF22P17026 224 aaPredicted RBP13.59□□□□□ -0.23
SMPD3-203ENST00000563226 RPL36AP83881 106 aaKnown RBP13.59□□□□□ -0.23
SMPD3-203ENST00000563226 GAGE4Q13068 117 aa13.59□□□□□ -0.23
SMPD3-203ENST00000563226 GAGE5Q13069 117 aa13.59□□□□□ -0.23
SMPD3-203ENST00000563226 GAGE13Q4V321 117 aa13.59□□□□□ -0.23
SMPD3-203ENST00000563226 Q6ZUT4 128 aa13.59□□□□□ -0.23
SMPD3-203ENST00000563226 RPL36ALQ969Q0 106 aaKnown RBP13.59□□□□□ -0.23
SMPD3-203ENST00000563226 SPANXA1Q9NS26 97 aa13.59□□□□□ -0.23
SMPD3-203ENST00000563226 LOC100131303A0A0U1RQF7 123 aa13.58□□□□□ -0.24
SMPD3-203ENST00000563226 UBE2D3P61077 147 aa13.58□□□□□ -0.24
SMPD3-203ENST00000563226 UBE2D2P62837 147 aa13.58□□□□□ -0.24
SMPD3-203ENST00000563226 CEND1Q8N111 149 aa13.58□□□□□ -0.24
SMPD3-203ENST00000563226 NTM-AS1Q6ZSK4 140 aa13.57□□□□□ -0.24
SMPD3-203ENST00000563226 TMEM223A0PJW6 202 aa13.57□□□□□ -0.24
SMPD3-203ENST00000563226 X6R8D5 127 aa13.57□□□□□ -0.24
SMPD3-203ENST00000563226 H3BRM9 83 aa13.56□□□□□ -0.24
SMPD3-203ENST00000563226 TM2D2Q9BX73 214 aa13.56□□□□□ -0.24
SMPD3-203ENST00000563226 IGHV3-64A0A075B6Q5 118 aa13.55□□□□□ -0.24
SMPD3-203ENST00000563226 LINC00694P0DN24 101 aa13.55□□□□□ -0.24
SMPD3-203ENST00000563226 VAMP3Q15836 100 aa13.55□□□□□ -0.24
SMPD3-203ENST00000563226 RAB37Q96AX2 223 aa13.55□□□□□ -0.24
SMPD3-203ENST00000563226 NAA38Q9BRA0 125 aaKnown RBP13.55□□□□□ -0.24
SMPD3-203ENST00000563226 NBEAL2Q6ZNJ1 2754 aa13.55□□□□□ -0.24
SMPD3-203ENST00000563226 CCL25O15444 150 aa13.55□□□□□ -0.24
SMPD3-203ENST00000563226 CRYBA4P53673 196 aa13.55□□□□□ -0.24
SMPD3-203ENST00000563226 HIST1H4GQ99525 98 aa13.55□□□□□ -0.24
SMPD3-203ENST00000563226 K7ERJ3 54 aa13.54□□□□□ -0.24
SMPD3-203ENST00000563226 MRPS36P82909 103 aaKnown RBP13.54□□□□□ -0.24
SMPD3-203ENST00000563226 DAZ4Q86SG3 579 aaKnown RBP13.54□□□□□ -0.24
SMPD3-203ENST00000563226 DAZ3Q9NR90 486 aaKnown RBP13.54□□□□□ -0.24
SMPD3-203ENST00000563226 TRGV4A0A0C4DH28 118 aa13.54□□□□□ -0.24
SMPD3-203ENST00000563226 PTTG1IPP53801 180 aa13.54□□□□□ -0.24
SMPD3-203ENST00000563226 FHL2Q14192 279 aa13.54□□□□□ -0.24
SMPD3-203ENST00000563226 TAL2Q16559 108 aa13.54□□□□□ -0.24
SMPD3-203ENST00000563226 J3QQQ9 107 aa13.53□□□□□ -0.24
SMPD3-203ENST00000563226 UBE2V1Q13404 147 aa13.53□□□□□ -0.24
SMPD3-203ENST00000563226 AMMECR1LQ6DCA0 310 aa13.53□□□□□ -0.24
SMPD3-203ENST00000563226 SCGB1D4Q6XE38 83 aa13.53□□□□□ -0.24
SMPD3-203ENST00000563226 TRBV6-4A0A1B0GX49 114 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms