RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 PRELID3AQ96N28 172 aa14.73□□□□□ -0.05
SNX1-210ENST00000560260 GNB1LQ9BYB4 327 aa14.73□□□□□ -0.05
SNX1-210ENST00000560260 I3L3M4 83 aa14.72□□□□□ -0.05
SNX1-210ENST00000560260 PPP1R17O96001 155 aa14.72□□□□□ -0.05
SNX1-210ENST00000560260 HLA-DQA1P01909 254 aa14.72□□□□□ -0.05
SNX1-210ENST00000560260 KIAA1644Q3SXP7 199 aa14.72□□□□□ -0.05
SNX1-210ENST00000560260 CHCHD5Q9BSY4 110 aa14.72□□□□□ -0.05
SNX1-210ENST00000560260 PMCHP20382 165 aa14.71□□□□□ -0.05
SNX1-210ENST00000560260 AMTP48728 403 aa14.71□□□□□ -0.05
SNX1-210ENST00000560260 C20orf78Q9BR46 151 aa14.71□□□□□ -0.05
SNX1-210ENST00000560260 PHOX2AO14813 284 aa14.7□□□□□ -0.06
SNX1-210ENST00000560260 APCSP02743 223 aa14.7□□□□□ -0.06
SNX1-210ENST00000560260 GAGE6Q13070 117 aa14.7□□□□□ -0.06
SNX1-210ENST00000560260 MPV17L2Q567V2 206 aa14.7□□□□□ -0.06
SNX1-210ENST00000560260 TMEM243Q9BU79 118 aa14.7□□□□□ -0.06
SNX1-210ENST00000560260 CHCHD7Q9BUK0 85 aa14.7□□□□□ -0.06
SNX1-210ENST00000560260 SMCO4Q9NRQ5 59 aa14.7□□□□□ -0.06
SNX1-210ENST00000560260 RPL32P62910 135 aaKnown RBP14.69□□□□□ -0.06
SNX1-210ENST00000560260 SMIM2Q9BVW6 85 aa14.69□□□□□ -0.06
SNX1-210ENST00000560260 VCYO14598 125 aa14.68□□□□□ -0.06
SNX1-210ENST00000560260 RTL8CO15255 209 aa14.68□□□□□ -0.06
SNX1-210ENST00000560260 COX19Q49B96 90 aa14.68□□□□□ -0.06
SNX1-210ENST00000560260 MRPL18Q9H0U6 180 aaKnown RBP14.68□□□□□ -0.06
SNX1-210ENST00000560260 MT-ND6P03923 174 aa14.67□□□□□ -0.06
SNX1-210ENST00000560260 DNAH11Q96DT5 4516 aa14.67□□□□□ -0.06
SNX1-210ENST00000560260 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.66□□□□□ -0.06
SNX1-210ENST00000560260 IGKV2-29A2NJV5 120 aaPredicted RBP14.66□□□□□ -0.06
SNX1-210ENST00000560260 TMEM262E9PQX1 116 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 ESDP10768 282 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 C6orf223Q8N319 242 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 C10orf126Q8N4M7 172 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 Q8N976 141 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 LAMTOR2Q9Y2Q5 125 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 TRAV9-2A0A087WT02 112 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 A0A087WX48 190 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 IBA57-AS1B1ANH7 110 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 K7EP13 123 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 SCO1O75880 301 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 RBX1P62877 108 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 C1orf134Q5TEV5 83 aa14.66□□□□□ -0.06
SNX1-210ENST00000560260 PRSS47A8MTI9 375 aa14.65□□□□□ -0.06
SNX1-210ENST00000560260 FABP9Q0Z7S8 132 aa14.65□□□□□ -0.06
SNX1-210ENST00000560260 LOC389332A0A1B0GUA5 103 aa14.64□□□□□ -0.07
SNX1-210ENST00000560260 Q6ZRN7 208 aaPredicted RBP14.64□□□□□ -0.07
SNX1-210ENST00000560260 ALKBH7Q9BT30 221 aaPredicted RBP14.64□□□□□ -0.07
SNX1-210ENST00000560260 MAP1LC3AQ9H492 121 aa14.64□□□□□ -0.07
SNX1-210ENST00000560260 KLK12Q9UKR0 248 aa14.64□□□□□ -0.07
SNX1-210ENST00000560260 EPPK1P58107 5090 aaKnown RBP14.63□□□□□ -0.07
SNX1-210ENST00000560260 FCER1GP30273 86 aa14.63□□□□□ -0.07
SNX1-210ENST00000560260 KIR2DL4Q99706 377 aa14.63□□□□□ -0.07
SNX1-210ENST00000560260 TRAPPC1Q9Y5R8 145 aa14.63□□□□□ -0.07
SNX1-210ENST00000560260 IGLV4-60A0A075B6I1 120 aa14.62□□□□□ -0.07
SNX1-210ENST00000560260 TCAPO15273 167 aa14.62□□□□□ -0.07
SNX1-210ENST00000560260 PKIAP61925 76 aa14.62□□□□□ -0.07
SNX1-210ENST00000560260 C20orf203Q8NBC4 194 aa14.62□□□□□ -0.07
SNX1-210ENST00000560260 UBE2L6O14933 153 aa14.61□□□□□ -0.07
SNX1-210ENST00000560260 ATP6V1G1O75348 118 aa14.61□□□□□ -0.07
SNX1-210ENST00000560260 LAGE3Q14657 143 aa14.61□□□□□ -0.07
SNX1-210ENST00000560260 Q9HAA7 133 aa14.61□□□□□ -0.07
SNX1-210ENST00000560260 BTF3P20290 206 aaKnown RBP14.6□□□□□ -0.07
SNX1-210ENST00000560260 Q8N8P6 123 aa14.6□□□□□ -0.07
SNX1-210ENST00000560260 ANGP03950 147 aaKnown RBP14.59□□□□□ -0.07
SNX1-210ENST00000560260 FGF6P10767 208 aa14.59□□□□□ -0.07
SNX1-210ENST00000560260 A0A1B0GUV1 79 aa14.58□□□□□ -0.08
SNX1-210ENST00000560260 COLCA2A8K830 154 aa14.58□□□□□ -0.08
SNX1-210ENST00000560260 H7C423 109 aa14.58□□□□□ -0.08
SNX1-210ENST00000560260 ENHOQ6UWT2 76 aa14.58□□□□□ -0.08
SNX1-210ENST00000560260 UBE2WQ96B02 151 aa14.58□□□□□ -0.08
SNX1-210ENST00000560260 PKD1P98161 4303 aa14.57□□□□□ -0.08
SNX1-210ENST00000560260 IFI27P40305 119 aaPredicted RBP14.57□□□□□ -0.08
SNX1-210ENST00000560260 CLPSL2Q6UWE3 100 aa14.57□□□□□ -0.08
SNX1-210ENST00000560260 LINC00269Q8N2A0 174 aa14.56□□□□□ -0.08
SNX1-210ENST00000560260 PRR34Q9NV39 138 aa14.56□□□□□ -0.08
SNX1-210ENST00000560260 RPL39P62891 51 aaKnown RBP14.55□□□□□ -0.08
SNX1-210ENST00000560260 TNP2Q05952 138 aa14.55□□□□□ -0.08
SNX1-210ENST00000560260 AMMECR1LQ6DCA0 310 aa14.55□□□□□ -0.08
SNX1-210ENST00000560260 RNASEKQ6P5S7 137 aaKnown RBP14.55□□□□□ -0.08
SNX1-210ENST00000560260 MRPL52Q86TS9 123 aaKnown RBP14.55□□□□□ -0.08
SNX1-210ENST00000560260 NFE4Q86UQ8 179 aa14.54□□□□□ -0.08
SNX1-210ENST00000560260 NXT2Q9NPJ8 142 aaKnown RBP14.54□□□□□ -0.08
SNX1-210ENST00000560260 UBE2D4Q9Y2X8 147 aa14.54□□□□□ -0.08
SNX1-210ENST00000560260 HECTD4Q9Y4D8 3996 aa14.53□□□□□ -0.08
SNX1-210ENST00000560260 DYNC1H1Q14204 4646 aaKnown RBP14.53□□□□□ -0.08
SNX1-210ENST00000560260 TRAV8-3A0A0A6YYJ7 113 aa14.52□□□□□ -0.08
SNX1-210ENST00000560260 PRSS29PA6NIE9 313 aa14.52□□□□□ -0.08
SNX1-210ENST00000560260 ZNF25P17030 456 aaPredicted RBP14.52□□□□□ -0.08
SNX1-210ENST00000560260 RAB5AP20339 215 aa14.52□□□□□ -0.08
SNX1-210ENST00000560260 LINC00336Q6ZUF6 198 aa14.52□□□□□ -0.08
SNX1-210ENST00000560260 C18orf32Q8TCD1 76 aa14.52□□□□□ -0.08
SNX1-210ENST00000560260 CRPP02741 224 aa14.51□□□□□ -0.09
SNX1-210ENST00000560260 S100A1P23297 94 aa14.51□□□□□ -0.09
SNX1-210ENST00000560260 URB1-AS1Q96HZ7 61 aa14.51□□□□□ -0.09
SNX1-210ENST00000560260 REG3AQ06141 175 aa14.5□□□□□ -0.09
SNX1-210ENST00000560260 Q0VG73 95 aa14.5□□□□□ -0.09
SNX1-210ENST00000560260 FAM104AQ969W3 186 aa14.5□□□□□ -0.09
SNX1-210ENST00000560260 DNAH5Q8TE73 4624 aa14.5□□□□□ -0.09
SNX1-210ENST00000560260 LINC01546A6NGU7 62 aa14.49□□□□□ -0.09
SNX1-210ENST00000560260 TRGC2P03986 189 aa14.49□□□□□ -0.09
SNX1-210ENST00000560260 OR5A1Q8NGJ0 315 aa14.49□□□□□ -0.09
SNX1-210ENST00000560260 PRSS3P2Q8NHM4 247 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms