RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 RPRMQ9NS64 109 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 SPEGQ15772 3267 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 NRXN2Q9P2S2 1712 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 MKI67P46013 3256 aaKnown RBP0.23□□□□□ -2.37
USP3-209ENST00000558925 HMGXB3Q12766 1538 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 WNK1Q9H4A3 2382 aa0.23□□□□□ -2.37
USP3-209ENST00000558925 EYSQ5T1H1 3165 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 PTPRZ1P23471 2315 aaPredicted RBP0.22□□□□□ -2.37
USP3-209ENST00000558925 KMT2DO14686 5537 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 CSMD1Q96PZ7 3565 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 ITPR1Q14643 2758 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 GVQW2A0A096LPI5 108 aaPredicted RBP0.22□□□□□ -2.37
USP3-209ENST00000558925 TRBV7-1A0A0A6YYK4 115 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 RBAKDNA6NC62 111 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 DLEU1O43261 78 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 NDUFB6O95139 128 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 PIPP12273 146 aaPredicted RBP0.22□□□□□ -2.37
USP3-209ENST00000558925 SSBP1Q04837 148 aaKnown RBP0.22□□□□□ -2.37
USP3-209ENST00000558925 KRTAP21-1Q3LI58 79 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 SCIMPQ6UWF3 145 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 LSM10Q969L4 123 aaKnown RBP0.22□□□□□ -2.37
USP3-209ENST00000558925 TSC22D3Q99576 134 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 SMR3AQ99954 134 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 PDCD10Q9BUL8 212 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 TMEM191AQ9H0A3 160 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 PLAC8Q9NZF1 115 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 V9GYV3 84 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 KDM6BO15054 1643 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.22□□□□□ -2.37
USP3-209ENST00000558925 NBEAQ8NFP9 2946 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 MED14O60244 1454 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 MBD5Q9P267 1494 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 LAMB1P07942 1786 aa0.22□□□□□ -2.37
USP3-209ENST00000558925 F8P00451 2351 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 RYR3Q15413 4870 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 HERC1Q15751 4861 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 TNS1Q9HBL0 1735 aaKnown RBP0.21□□□□□ -2.38
USP3-209ENST00000558925 ABCA13Q86UQ4 5058 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 ROCK2O75116 1388 aaKnown RBP0.21□□□□□ -2.38
USP3-209ENST00000558925 TMEM2Q9UHN6 1383 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 HYDINQ4G0P3 5121 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 BSNQ9UPA5 3926 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 CELSR1Q9NYQ6 3014 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 ITPR2Q14571 2701 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 PEG3Q9GZU2 1588 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 TRGV1A0A0A0MS02 117 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 EFCAB10A6NFE3 127 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 FAM25AB3EWG3 89 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 FAM25CB3EWG5 89 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 FAM25GB3EWG6 89 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 CBLN1P23435 193 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 UBE2D1P51668 147 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 EDDM3BP56851 147 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 SELENOWP63302 87 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 RBM3P98179 157 aaKnown RBP0.21□□□□□ -2.38
USP3-209ENST00000558925 MEIG1Q5JSS6 88 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 RPL13AP3Q6NVV1 102 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 PPP1R1CQ8WVI7 109 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 ARL11Q969Q4 196 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 C2orf88Q9BSF0 95 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 AGPAT4-IT1Q9H0P7 198 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 SCN3BQ9NY72 215 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 PAIP2BQ9ULR5 123 aaKnown RBP0.21□□□□□ -2.38
USP3-209ENST00000558925 CELSR2Q9HCU4 2923 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 BIRC6Q9NR09 4857 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 NALCNQ8IZF0 1738 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 TGP01266 2768 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 MUC5ACP98088 5654 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 HIVEP1P15822 2718 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 MYH8P13535 1937 aa0.21□□□□□ -2.38
USP3-209ENST00000558925 NBASA2RRP1 2371 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 DOCK1Q14185 1865 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 WDR87Q6ZQQ6 2873 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 EPPK1P58107 5090 aaKnown RBP0.2□□□□□ -2.38
USP3-209ENST00000558925 COL12A1Q99715 3063 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 SSC5DA1L4H1 1573 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 ASXL3Q9C0F0 2248 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 DNHD1Q96M86 4753 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 F2Z2F3 143 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 ATP6V1G2-DDX39BF2Z307 99 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 ACYP2P14621 99 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 FAM74A4Q5TZK3 123 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.2□□□□□ -2.38
USP3-209ENST00000558925 PROK2Q9HC23 129 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 CCDC167Q9P0B6 97 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 LINC00312Q9Y6C7 94 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 FAT4Q6V0I7 4981 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 LAMA3Q16787 3333 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 ANK2Q01484 3957 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 GRIN2AQ12879 1464 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 UNC80Q8N2C7 3258 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 PI4KAP42356 2102 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 QRICH2Q9H0J4 1663 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 ROBO1Q9Y6N7 1651 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 PATJQ8NI35 1801 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 ZFHX3Q15911 3703 aa0.2□□□□□ -2.38
USP3-209ENST00000558925 SSPOA2VEC9 5147 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 CRYBG3Q68DQ2 2970 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 RELNP78509 3460 aa0.19□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms