RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 NOP10Q9NPE3 64 aaKnown RBP6.17□□□□□ -1.42
USP3-208ENST00000558285 TRAV21A0A0B4J279 112 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 CCL18P55774 89 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 HBBP68871 147 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 ERCC8Q13216 396 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 LGALS9BQ3B8N2 356 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 POM121L12Q8N7R1 296 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 GOLT1AQ6ZVE7 132 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 NUP35Q8NFH5 326 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 GTSF1Q8WW33 167 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 URB1-AS1Q96HZ7 61 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 FAM19A4Q96LR4 140 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 SPXQ9BT56 116 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 GFRA4Q9GZZ7 299 aa6.16□□□□□ -1.42
USP3-208ENST00000558285 RNASE7Q9H1E1 156 aaKnown RBP6.16□□□□□ -1.42
USP3-208ENST00000558285 H3BNG1 76 aa6.15□□□□□ -1.42
USP3-208ENST00000558285 IGLV2-8P01709 118 aa6.15□□□□□ -1.42
USP3-208ENST00000558285 ZNF503Q96F45 646 aa6.15□□□□□ -1.42
USP3-208ENST00000558285 PSG8Q9UQ74 426 aa6.15□□□□□ -1.42
USP3-208ENST00000558285 A0A087WWL8 130 aa6.14□□□□□ -1.43
USP3-208ENST00000558285 TRGV1A0A0A0MS02 117 aa6.14□□□□□ -1.43
USP3-208ENST00000558285 SPINK4O60575 86 aa6.14□□□□□ -1.43
USP3-208ENST00000558285 GAGE7O76087 117 aa6.14□□□□□ -1.43
USP3-208ENST00000558285 GAGE12FP0CL80 117 aa6.14□□□□□ -1.43
USP3-208ENST00000558285 GAGE12GP0CL81 117 aa6.14□□□□□ -1.43
USP3-208ENST00000558285 GAGE12IP0CL82 117 aa6.14□□□□□ -1.43
USP3-208ENST00000558285 MGST1P10620 155 aaKnown RBP6.14□□□□□ -1.43
USP3-208ENST00000558285 TAL2Q16559 108 aa6.14□□□□□ -1.43
USP3-208ENST00000558285 Q6AWC8 147 aa6.14□□□□□ -1.43
USP3-208ENST00000558285 ZFAND2AQ8N6M9 145 aa6.14□□□□□ -1.43
USP3-208ENST00000558285 C18orf15Q96N68 181 aa6.14□□□□□ -1.43
USP3-208ENST00000558285 A0A1B0GW15 77 aa6.13□□□□□ -1.43
USP3-208ENST00000558285 E9PLD3 99 aa6.13□□□□□ -1.43
USP3-208ENST00000558285 TCRAP04437 139 aa6.13□□□□□ -1.43
USP3-208ENST00000558285 TMEM75Q8N9X5 138 aa6.13□□□□□ -1.43
USP3-208ENST00000558285 Q8TAT8 98 aa6.13□□□□□ -1.43
USP3-208ENST00000558285 EPDR1Q9UM22 224 aa6.13□□□□□ -1.43
USP3-208ENST00000558285 TNFRSF18Q9Y5U5 241 aa6.13□□□□□ -1.43
USP3-208ENST00000558285 A8MWL6 223 aa6.13□□□□□ -1.43
USP3-208ENST00000558285 LINC00612Q8N6U2 182 aa6.13□□□□□ -1.43
USP3-208ENST00000558285 GATD1Q8NB37 220 aa6.13□□□□□ -1.43
USP3-208ENST00000558285 PLAC8L1A1L4L8 177 aa6.12□□□□□ -1.43
USP3-208ENST00000558285 SPINK8P0C7L1 97 aa6.12□□□□□ -1.43
USP3-208ENST00000558285 LINC00336Q6ZUF6 198 aa6.12□□□□□ -1.43
USP3-208ENST00000558285 TM2D2Q9BX73 214 aa6.12□□□□□ -1.43
USP3-208ENST00000558285 KLF12Q9Y4X4 402 aa6.12□□□□□ -1.43
USP3-208ENST00000558285 HIGD1CA8MV81 97 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 TMEM262E9PQX1 116 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 H3BMG7 143 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 PRB4P10163 310 aaPredicted RBP6.11□□□□□ -1.43
USP3-208ENST00000558285 GAGE13Q4V321 117 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 TTC32Q5I0X7 151 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 SH2D6Q7Z4S9 175 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 FMC1Q96HJ9 113 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 ANAPC13Q9BS18 74 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 TENM2Q9NT68 2774 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 TRGV4A0A0C4DH28 118 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 M0R2P5 195 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 ORM1P02763 201 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 Q6ZTI0 123 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 PRNTQ86SH4 94 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 C11orf72Q8NBR9 251 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 PRO0255Q9UI72 69 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 ICOSQ9Y6W8 199 aa6.11□□□□□ -1.43
USP3-208ENST00000558285 FABP5P3A8MUU1 101 aa6.1□□□□□ -1.43
USP3-208ENST00000558285 GGTLC3B5MD39 225 aa6.1□□□□□ -1.43
USP3-208ENST00000558285 PEX7O00628 323 aa6.1□□□□□ -1.43
USP3-208ENST00000558285 PAX4O43316 350 aa6.1□□□□□ -1.43
USP3-208ENST00000558285 S100A4P26447 101 aaKnown RBP6.1□□□□□ -1.43
USP3-208ENST00000558285 GNG5P63218 68 aa6.1□□□□□ -1.43
USP3-208ENST00000558285 LYRM7Q5U5X0 104 aa6.1□□□□□ -1.43
USP3-208ENST00000558285 RAB37Q96AX2 223 aa6.1□□□□□ -1.43
USP3-208ENST00000558285 RPP21Q9H633 154 aaKnown RBP6.1□□□□□ -1.43
USP3-208ENST00000558285 TP73-AS1Q9UF72 201 aa6.1□□□□□ -1.43
USP3-208ENST00000558285 PRSS29PA6NIE9 313 aa6.09□□□□□ -1.43
USP3-208ENST00000558285 PRM2P04554 102 aa6.09□□□□□ -1.43
USP3-208ENST00000558285 HERV-K104P63124 156 aa6.09□□□□□ -1.43
USP3-208ENST00000558285 FOXI1Q12951 378 aa6.09□□□□□ -1.43
USP3-208ENST00000558285 MRPL23Q16540 153 aaKnown RBP6.09□□□□□ -1.43
USP3-208ENST00000558285 Q6ZUT4 128 aa6.09□□□□□ -1.43
USP3-208ENST00000558285 LINC00173Q6ZV60 143 aa6.09□□□□□ -1.43
USP3-208ENST00000558285 SYT8Q8NBV8 401 aa6.09□□□□□ -1.43
USP3-208ENST00000558285 SS18L2Q9UHA2 77 aa6.09□□□□□ -1.43
USP3-208ENST00000558285 PRO0461Q9UI25 63 aa6.09□□□□□ -1.43
USP3-208ENST00000558285 TRAV8-1A0A0A6YYK1 113 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 APOMO95445 188 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 CAMPP49913 170 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 RPL32P62910 135 aaKnown RBP6.08□□□□□ -1.44
USP3-208ENST00000558285 WFDC2Q14508 124 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 Q6Q795 121 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 RASL10AQ92737 203 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 HHLA3Q9XRX5 114 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 DNAH7Q8WXX0 4024 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 TRAV4A0A0B4J268 109 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 ASIPP42127 132 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 FOXA3P55318 350 aaPredicted RBP6.08□□□□□ -1.44
USP3-208ENST00000558285 ETDBQ3ZM63 59 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 PRR9Q5T870 116 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 CEND1Q8N111 149 aa6.08□□□□□ -1.44
USP3-208ENST00000558285 SPANXCQ9NY87 97 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms