RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 TMEM238C9JI98 176 aa9.41□□□□□ -0.9
LDLR-207ENST00000558013 ELANEP08246 267 aa9.41□□□□□ -0.9
LDLR-207ENST00000558013 AZU1P20160 251 aa9.41□□□□□ -0.9
LDLR-207ENST00000558013 NFE4Q86UQ8 179 aa9.41□□□□□ -0.9
LDLR-207ENST00000558013 VCX2Q9H322 139 aa9.41□□□□□ -0.9
LDLR-207ENST00000558013 CR1P17927 2039 aa9.41□□□□□ -0.9
LDLR-207ENST00000558013 TENM4Q6N022 2769 aa9.41□□□□□ -0.9
LDLR-207ENST00000558013 TRAV2A0A0B4J234 112 aa9.41□□□□□ -0.9
LDLR-207ENST00000558013 H3BMM0 161 aa9.41□□□□□ -0.9
LDLR-207ENST00000558013 DSCR9P59020 149 aa9.41□□□□□ -0.9
LDLR-207ENST00000558013 GAGE12HA6NDE8 117 aa9.4□□□□□ -0.9
LDLR-207ENST00000558013 RHODO00212 210 aa9.4□□□□□ -0.9
LDLR-207ENST00000558013 CD28P10747 220 aa9.4□□□□□ -0.9
LDLR-207ENST00000558013 CFAP126Q5VTH2 177 aa9.4□□□□□ -0.9
LDLR-207ENST00000558013 C10orf126Q8N4M7 172 aa9.4□□□□□ -0.9
LDLR-207ENST00000558013 A4D1N5 150 aa9.4□□□□□ -0.9
LDLR-207ENST00000558013 TCL1BO95988 128 aa9.4□□□□□ -0.9
LDLR-207ENST00000558013 DLX4Q92988 240 aaPredicted RBP9.4□□□□□ -0.9
LDLR-207ENST00000558013 RHOHQ15669 191 aa9.4□□□□□ -0.91
LDLR-207ENST00000558013 TMEM89A2RUT3 159 aa9.39□□□□□ -0.91
LDLR-207ENST00000558013 UBE2D3P61077 147 aa9.39□□□□□ -0.91
LDLR-207ENST00000558013 UBE2D2P62837 147 aa9.39□□□□□ -0.91
LDLR-207ENST00000558013 ITPR2Q14571 2701 aa9.39□□□□□ -0.91
LDLR-207ENST00000558013 TRGV11A0A075B6L2 103 aa9.39□□□□□ -0.91
LDLR-207ENST00000558013 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.39□□□□□ -0.91
LDLR-207ENST00000558013 IGKV2-29A2NJV5 120 aaPredicted RBP9.39□□□□□ -0.91
LDLR-207ENST00000558013 FSHBP01225 129 aa9.38□□□□□ -0.91
LDLR-207ENST00000558013 MUSTN1Q8IVN3 82 aa9.38□□□□□ -0.91
LDLR-207ENST00000558013 J3QLI3 93 aa9.38□□□□□ -0.91
LDLR-207ENST00000558013 IGHV3OR16-12A0A075B7B8 117 aa9.37□□□□□ -0.91
LDLR-207ENST00000558013 LEPROTO15243 131 aa9.37□□□□□ -0.91
LDLR-207ENST00000558013 IGHV3-30-3P0DP02 117 aa9.37□□□□□ -0.91
LDLR-207ENST00000558013 NPC2P61916 151 aa9.37□□□□□ -0.91
LDLR-207ENST00000558013 LINC01587Q99440 93 aa9.37□□□□□ -0.91
LDLR-207ENST00000558013 TNFRSF18Q9Y5U5 241 aa9.37□□□□□ -0.91
LDLR-207ENST00000558013 FHL3Q13643 280 aa9.36□□□□□ -0.91
LDLR-207ENST00000558013 NBEAL2Q6ZNJ1 2754 aa9.36□□□□□ -0.91
LDLR-207ENST00000558013 XCL2Q9UBD3 114 aa9.36□□□□□ -0.91
LDLR-207ENST00000558013 PRO1854Q9UHT4 67 aa9.36□□□□□ -0.91
LDLR-207ENST00000558013 A0A1W2PRX2 142 aa9.36□□□□□ -0.91
LDLR-207ENST00000558013 SCGB1C2P0DMR2 95 aa9.36□□□□□ -0.91
LDLR-207ENST00000558013 Q5PR19 223 aa9.36□□□□□ -0.91
LDLR-207ENST00000558013 SIGMAR1Q99720 223 aa9.36□□□□□ -0.91
LDLR-207ENST00000558013 MAP6D1Q9H9H5 199 aa9.36□□□□□ -0.91
LDLR-207ENST00000558013 FOXI1Q12951 378 aa9.36□□□□□ -0.91
LDLR-207ENST00000558013 Q6ZSV7 163 aa9.36□□□□□ -0.91
LDLR-207ENST00000558013 ADAMTSL4-AS1Q5T5F5 129 aa9.35□□□□□ -0.91
LDLR-207ENST00000558013 RNF152Q8N8N0 203 aa9.35□□□□□ -0.91
LDLR-207ENST00000558013 A0A0J9YXY3 114 aa9.35□□□□□ -0.91
LDLR-207ENST00000558013 M0R2P5 195 aa9.35□□□□□ -0.91
LDLR-207ENST00000558013 PRSS2P07478 247 aa9.35□□□□□ -0.91
LDLR-207ENST00000558013 CARD19Q96LW7 228 aa9.35□□□□□ -0.91
LDLR-207ENST00000558013 Q96MF0 132 aa9.35□□□□□ -0.91
LDLR-207ENST00000558013 LINC00467Q9BRT7 94 aa9.35□□□□□ -0.91
LDLR-207ENST00000558013 CHCHD7Q9BUK0 85 aa9.35□□□□□ -0.91
LDLR-207ENST00000558013 SPINK8P0C7L1 97 aa9.34□□□□□ -0.91
LDLR-207ENST00000558013 Q6ZUT4 128 aa9.34□□□□□ -0.91
LDLR-207ENST00000558013 C11orf72Q8NBR9 251 aa9.34□□□□□ -0.91
LDLR-207ENST00000558013 C1QTNF4Q9BXJ3 329 aa9.34□□□□□ -0.91
LDLR-207ENST00000558013 TIMM21Q9BVV7 248 aa9.34□□□□□ -0.92
LDLR-207ENST00000558013 J3QR89 54 aa9.33□□□□□ -0.92
LDLR-207ENST00000558013 DYNLRB2Q8TF09 96 aa9.33□□□□□ -0.92
LDLR-207ENST00000558013 TMEM263Q8WUH6 116 aaKnown RBP9.33□□□□□ -0.92
LDLR-207ENST00000558013 FN1P02751 2386 aaKnown RBP9.33□□□□□ -0.92
LDLR-207ENST00000558013 IGHV3-33P01772 117 aa9.33□□□□□ -0.92
LDLR-207ENST00000558013 DEFB114Q30KQ6 69 aa9.33□□□□□ -0.92
LDLR-207ENST00000558013 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.33□□□□□ -0.92
LDLR-207ENST00000558013 DAND5Q8N907 189 aa9.33□□□□□ -0.92
LDLR-207ENST00000558013 NDUFA7O95182 113 aa9.32□□□□□ -0.92
LDLR-207ENST00000558013 LITAFQ99732 161 aa9.32□□□□□ -0.92
LDLR-207ENST00000558013 SPATA25Q9BR10 227 aa9.32□□□□□ -0.92
LDLR-207ENST00000558013 UBE2D4Q9Y2X8 147 aa9.32□□□□□ -0.92
LDLR-207ENST00000558013 MRPS36P82909 103 aaKnown RBP9.32□□□□□ -0.92
LDLR-207ENST00000558013 GCN1Q92616 2671 aaKnown RBP9.31□□□□□ -0.92
LDLR-207ENST00000558013 A8MWV9 139 aa9.31□□□□□ -0.92
LDLR-207ENST00000558013 IGHV3-53P01767 116 aa9.31□□□□□ -0.92
LDLR-207ENST00000558013 HIST2H2BCQ6DN03 193 aa9.31□□□□□ -0.92
LDLR-207ENST00000558013 ZNF415Q09FC8 603 aa9.31□□□□□ -0.92
LDLR-207ENST00000558013 ODF3L2Q3SX64 289 aa9.31□□□□□ -0.92
LDLR-207ENST00000558013 CDIP1Q9H305 208 aa9.31□□□□□ -0.92
LDLR-207ENST00000558013 PYGO1Q9Y3Y4 419 aa9.31□□□□□ -0.92
LDLR-207ENST00000558013 A8MTW9 85 aa9.3□□□□□ -0.92
LDLR-207ENST00000558013 Q1RN00 199 aa9.3□□□□□ -0.92
LDLR-207ENST00000558013 DEFB113Q30KQ7 82 aa9.3□□□□□ -0.92
LDLR-207ENST00000558013 NDUFA12Q9UI09 145 aa9.3□□□□□ -0.92
LDLR-207ENST00000558013 C9JAW5 83 aa9.3□□□□□ -0.92
LDLR-207ENST00000558013 C4orf3Q8WVX3 66 aa9.3□□□□□ -0.92
LDLR-207ENST00000558013 ANKRD29Q8N6D5 301 aa9.29□□□□□ -0.92
LDLR-207ENST00000558013 PEMTQ9UBM1 199 aa9.29□□□□□ -0.92
LDLR-207ENST00000558013 CDKN2A-AS1Q9UH64 79 aa9.29□□□□□ -0.92
LDLR-207ENST00000558013 ERG28Q9UKR5 140 aa9.29□□□□□ -0.92
LDLR-207ENST00000558013 VWFP04275 2813 aa9.29□□□□□ -0.92
LDLR-207ENST00000558013 COX6A2Q02221 97 aa9.29□□□□□ -0.92
LDLR-207ENST00000558013 Q8N2B8 174 aa9.29□□□□□ -0.92
LDLR-207ENST00000558013 LINC00694P0DN24 101 aa9.29□□□□□ -0.92
LDLR-207ENST00000558013 IGHV1-58A0A0C4DH39 117 aa9.28□□□□□ -0.92
LDLR-207ENST00000558013 A0A0U1RRA0 63 aa9.28□□□□□ -0.92
LDLR-207ENST00000558013 KRTAP1-3Q8IUG1 177 aa9.28□□□□□ -0.92
LDLR-207ENST00000558013 ZNF843Q8N446 348 aa9.28□□□□□ -0.92
LDLR-207ENST00000558013 ZNF625Q96I27 306 aaPredicted RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 248.8 ms