RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 TMEM243Q9BU79 118 aa9.66□□□□□ -0.86
USP3-205ENST00000557884 D6R8Y8 96 aa9.65□□□□□ -0.86
USP3-205ENST00000557884 BTF3P20290 206 aaKnown RBP9.65□□□□□ -0.86
USP3-205ENST00000557884 PMCHP20382 165 aa9.65□□□□□ -0.86
USP3-205ENST00000557884 NDUFA5Q16718 116 aa9.65□□□□□ -0.86
USP3-205ENST00000557884 MPV17L2Q567V2 206 aa9.65□□□□□ -0.86
USP3-205ENST00000557884 Q6ZRN7 208 aaPredicted RBP9.65□□□□□ -0.86
USP3-205ENST00000557884 TMEM70Q9BUB7 260 aa9.65□□□□□ -0.86
USP3-205ENST00000557884 KLK12Q9UKR0 248 aa9.65□□□□□ -0.86
USP3-205ENST00000557884 I3L3M4 83 aa9.64□□□□□ -0.87
USP3-205ENST00000557884 S100PP25815 95 aa9.64□□□□□ -0.87
USP3-205ENST00000557884 ATRAIDQ6UW56 229 aa9.64□□□□□ -0.87
USP3-205ENST00000557884 NFE4Q86UQ8 179 aa9.64□□□□□ -0.87
USP3-205ENST00000557884 Q8N976 141 aa9.64□□□□□ -0.87
USP3-205ENST00000557884 TMEM242Q9NWH2 141 aa9.64□□□□□ -0.87
USP3-205ENST00000557884 PKHD1P08F94 4074 aa9.63□□□□□ -0.87
USP3-205ENST00000557884 UBE2L6O14933 153 aa9.63□□□□□ -0.87
USP3-205ENST00000557884 PPP1R17O96001 155 aa9.63□□□□□ -0.87
USP3-205ENST00000557884 APCSP02743 223 aa9.63□□□□□ -0.87
USP3-205ENST00000557884 POLR2KP53803 58 aaKnown RBP9.63□□□□□ -0.87
USP3-205ENST00000557884 PKIAP61925 76 aa9.63□□□□□ -0.87
USP3-205ENST00000557884 SUMO2P61956 95 aaKnown RBP9.63□□□□□ -0.87
USP3-205ENST00000557884 RBX1P62877 108 aa9.63□□□□□ -0.87
USP3-205ENST00000557884 SVBPQ8N300 66 aa9.63□□□□□ -0.87
USP3-205ENST00000557884 CHCHD7Q9BUK0 85 aa9.63□□□□□ -0.87
USP3-205ENST00000557884 SNAPINO95295 136 aa9.62□□□□□ -0.87
USP3-205ENST00000557884 TNFRSF6BO95407 300 aa9.62□□□□□ -0.87
USP3-205ENST00000557884 TSHBP01222 138 aa9.62□□□□□ -0.87
USP3-205ENST00000557884 LAGE3Q14657 143 aa9.62□□□□□ -0.87
USP3-205ENST00000557884 UBE2WQ96B02 151 aa9.62□□□□□ -0.87
USP3-205ENST00000557884 DYNC1H1Q14204 4646 aaKnown RBP9.62□□□□□ -0.87
USP3-205ENST00000557884 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.61□□□□□ -0.87
USP3-205ENST00000557884 TRAV9-1A0A075B6T8 112 aa9.61□□□□□ -0.87
USP3-205ENST00000557884 IGKV2-29A2NJV5 120 aaPredicted RBP9.61□□□□□ -0.87
USP3-205ENST00000557884 VCYO14598 125 aa9.61□□□□□ -0.87
USP3-205ENST00000557884 NPYP01303 97 aa9.61□□□□□ -0.87
USP3-205ENST00000557884 ANGP03950 147 aaKnown RBP9.61□□□□□ -0.87
USP3-205ENST00000557884 ELOBQ15370 118 aa9.61□□□□□ -0.87
USP3-205ENST00000557884 TMEM136Q6ZRR5 245 aa9.61□□□□□ -0.87
USP3-205ENST00000557884 ORMDL3Q8N138 153 aa9.61□□□□□ -0.87
USP3-205ENST00000557884 TRAV8-3A0A0A6YYJ7 113 aa9.6□□□□□ -0.87
USP3-205ENST00000557884 TRBV27A0A0K0K1C4 114 aa9.6□□□□□ -0.87
USP3-205ENST00000557884 A0A1B0GVY2 172 aa9.6□□□□□ -0.87
USP3-205ENST00000557884 PPBPP02775 128 aa9.6□□□□□ -0.87
USP3-205ENST00000557884 CLPSL2Q6UWE3 100 aa9.6□□□□□ -0.87
USP3-205ENST00000557884 PRELID3AQ96N28 172 aa9.6□□□□□ -0.87
USP3-205ENST00000557884 TRBV24-1A0A075B6N3 115 aa9.59□□□□□ -0.87
USP3-205ENST00000557884 PSCAO43653 123 aa9.59□□□□□ -0.87
USP3-205ENST00000557884 FCER1GP30273 86 aa9.59□□□□□ -0.87
USP3-205ENST00000557884 C20orf78Q9BR46 151 aa9.59□□□□□ -0.87
USP3-205ENST00000557884 DNAH5Q8TE73 4624 aa9.59□□□□□ -0.87
USP3-205ENST00000557884 IGLV4-60A0A075B6I1 120 aa9.58□□□□□ -0.88
USP3-205ENST00000557884 CRPP02741 224 aa9.58□□□□□ -0.88
USP3-205ENST00000557884 AMMECR1LQ6DCA0 310 aa9.58□□□□□ -0.88
USP3-205ENST00000557884 LINC00269Q8N2A0 174 aa9.58□□□□□ -0.88
USP3-205ENST00000557884 C20orf203Q8NBC4 194 aa9.58□□□□□ -0.88
USP3-205ENST00000557884 SMIM2Q9BVW6 85 aa9.58□□□□□ -0.88
USP3-205ENST00000557884 BIRC6Q9NR09 4857 aa9.57□□□□□ -0.88
USP3-205ENST00000557884 IGKV2D-24A0A075B6R9 120 aa9.57□□□□□ -0.88
USP3-205ENST00000557884 PHOX2AO14813 284 aa9.57□□□□□ -0.88
USP3-205ENST00000557884 ESDP10768 282 aa9.57□□□□□ -0.88
USP3-205ENST00000557884 KIAA1644Q3SXP7 199 aa9.57□□□□□ -0.88
USP3-205ENST00000557884 RNASEKQ6P5S7 137 aaKnown RBP9.57□□□□□ -0.88
USP3-205ENST00000557884 ENHOQ6UWT2 76 aa9.57□□□□□ -0.88
USP3-205ENST00000557884 KIR2DL4Q99706 377 aa9.57□□□□□ -0.88
USP3-205ENST00000557884 TM2D2Q9BX73 214 aa9.57□□□□□ -0.88
USP3-205ENST00000557884 TGIF2-C20orf24A0A0A6YYL0 155 aa9.56□□□□□ -0.88
USP3-205ENST00000557884 LOC389332A0A1B0GUA5 103 aa9.56□□□□□ -0.88
USP3-205ENST00000557884 LCE2BO14633 110 aa9.56□□□□□ -0.88
USP3-205ENST00000557884 FGF6P10767 208 aa9.56□□□□□ -0.88
USP3-205ENST00000557884 RPL32P62910 135 aaKnown RBP9.56□□□□□ -0.88
USP3-205ENST00000557884 RMI2Q96E14 147 aa9.56□□□□□ -0.88
USP3-205ENST00000557884 LRP1BQ9NZR2 4599 aa9.55□□□□□ -0.88
USP3-205ENST00000557884 A0A087WTM6 91 aa9.55□□□□□ -0.88
USP3-205ENST00000557884 A0A1B0GUV1 79 aa9.55□□□□□ -0.88
USP3-205ENST00000557884 TCAPO15273 167 aa9.55□□□□□ -0.88
USP3-205ENST00000557884 HLA-DQA1P01909 254 aa9.55□□□□□ -0.88
USP3-205ENST00000557884 Q0VG73 95 aa9.55□□□□□ -0.88
USP3-205ENST00000557884 GNB1LQ9BYB4 327 aa9.55□□□□□ -0.88
USP3-205ENST00000557884 IGKV3OR2-268A0A0C4DH90 116 aa9.54□□□□□ -0.88
USP3-205ENST00000557884 H7C423 109 aa9.54□□□□□ -0.88
USP3-205ENST00000557884 REG3AQ06141 175 aa9.54□□□□□ -0.88
USP3-205ENST00000557884 C1orf43Q9BWL3 253 aa9.54□□□□□ -0.88
USP3-205ENST00000557884 MAP1LC3AQ9H492 121 aa9.54□□□□□ -0.88
USP3-205ENST00000557884 PRR34Q9NV39 138 aa9.54□□□□□ -0.88
USP3-205ENST00000557884 LAMTOR2Q9Y2Q5 125 aa9.54□□□□□ -0.88
USP3-205ENST00000557884 IGLV10-54A0A075B6I4 117 aa9.53□□□□□ -0.88
USP3-205ENST00000557884 EREGO14944 169 aa9.53□□□□□ -0.88
USP3-205ENST00000557884 LECT2O14960 151 aa9.53□□□□□ -0.88
USP3-205ENST00000557884 FUSP35637 526 aaKnown RBP eCLIP9.53□□□□□ -0.88
USP3-205ENST00000557884 MIAQ16674 131 aa9.53□□□□□ -0.88
USP3-205ENST00000557884 SPATA12Q7Z6I5 190 aa9.53□□□□□ -0.88
USP3-205ENST00000557884 MAPKAPK5-AS1Q8N8E1 139 aa9.53□□□□□ -0.88
USP3-205ENST00000557884 MRPL18Q9H0U6 180 aaKnown RBP9.53□□□□□ -0.88
USP3-205ENST00000557884 KRTAP10-2P60368 255 aa9.52□□□□□ -0.89
USP3-205ENST00000557884 FABP9Q0Z7S8 132 aa9.52□□□□□ -0.89
USP3-205ENST00000557884 COX19Q49B96 90 aa9.52□□□□□ -0.89
USP3-205ENST00000557884 CBLN2Q8IUK8 224 aa9.52□□□□□ -0.89
USP3-205ENST00000557884 OR5A1Q8NGJ0 315 aa9.52□□□□□ -0.89
USP3-205ENST00000557884 TMEM101Q96IK0 257 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms