RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 TMEM243Q9BU79 118 aa6.99□□□□□ -1.29
SYNE2-227ENST00000557307 RPP21Q9H633 154 aaKnown RBP6.99□□□□□ -1.29
SYNE2-227ENST00000557307 TRGC1P0CF51 173 aa6.98□□□□□ -1.29
SYNE2-227ENST00000557307 CHTF8P0CG12 524 aa6.98□□□□□ -1.29
SYNE2-227ENST00000557307 ALKAL2Q6UX46 152 aa6.98□□□□□ -1.29
SYNE2-227ENST00000557307 C15orf56Q8N910 161 aa6.98□□□□□ -1.29
SYNE2-227ENST00000557307 CNFNQ9BYD5 112 aa6.98□□□□□ -1.29
SYNE2-227ENST00000557307 NIT2Q9NQR4 276 aa6.98□□□□□ -1.29
SYNE2-227ENST00000557307 UBR4Q5T4S7 5183 aa6.97□□□□□ -1.29
SYNE2-227ENST00000557307 F2Z2F3 143 aa6.97□□□□□ -1.29
SYNE2-227ENST00000557307 TEX46H3BTG2 121 aa6.97□□□□□ -1.29
SYNE2-227ENST00000557307 H7C1H1 209 aa6.97□□□□□ -1.29
SYNE2-227ENST00000557307 AMTP48728 403 aa6.97□□□□□ -1.29
SYNE2-227ENST00000557307 PKIAP61925 76 aa6.97□□□□□ -1.29
SYNE2-227ENST00000557307 TWIST1Q15672 202 aa6.97□□□□□ -1.29
SYNE2-227ENST00000557307 EIF5AL1Q6IS14 154 aaKnown RBP6.97□□□□□ -1.29
SYNE2-227ENST00000557307 SDIM1Q6ZPB5 146 aa6.97□□□□□ -1.29
SYNE2-227ENST00000557307 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.97□□□□□ -1.29
SYNE2-227ENST00000557307 PGLYRP4Q96LB8 373 aa6.97□□□□□ -1.29
SYNE2-227ENST00000557307 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-227ENST00000557307 IGKV3OR2-268A0A0C4DH90 116 aa6.96□□□□□ -1.3
SYNE2-227ENST00000557307 A0A1B0GUV1 79 aa6.96□□□□□ -1.3
SYNE2-227ENST00000557307 hDV102S1A0JD36 115 aa6.96□□□□□ -1.3
SYNE2-227ENST00000557307 IGKV2-29A2NJV5 120 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-227ENST00000557307 RPL37AP61513 92 aaKnown RBP6.96□□□□□ -1.3
SYNE2-227ENST00000557307 TNXBP22105 4242 aa6.95□□□□□ -1.3
SYNE2-227ENST00000557307 XKRY2A2RUG3 117 aa6.95□□□□□ -1.3
SYNE2-227ENST00000557307 CNBPP62633 177 aaKnown RBP6.95□□□□□ -1.3
SYNE2-227ENST00000557307 COTL1Q14019 142 aa6.95□□□□□ -1.3
SYNE2-227ENST00000557307 DGAT2L7PQ6IED9 249 aa6.95□□□□□ -1.3
SYNE2-227ENST00000557307 GAGE12HA6NDE8 117 aa6.94□□□□□ -1.3
SYNE2-227ENST00000557307 CEBPGP53567 150 aa6.94□□□□□ -1.3
SYNE2-227ENST00000557307 CIRBPQ14011 172 aaKnown RBP6.94□□□□□ -1.3
SYNE2-227ENST00000557307 HIGD2BQ4VC39 106 aa6.94□□□□□ -1.3
SYNE2-227ENST00000557307 WDR73Q6P4I2 378 aa6.94□□□□□ -1.3
SYNE2-227ENST00000557307 FAM231BA6NCW3 169 aa6.93□□□□□ -1.3
SYNE2-227ENST00000557307 UBE2L6O14933 153 aa6.93□□□□□ -1.3
SYNE2-227ENST00000557307 GATCO43716 136 aaKnown RBP6.93□□□□□ -1.3
SYNE2-227ENST00000557307 AKAP14Q86UN6 197 aa6.93□□□□□ -1.3
SYNE2-227ENST00000557307 LYPD6BQ8NI32 183 aa6.93□□□□□ -1.3
SYNE2-227ENST00000557307 BIN3Q9NQY0 253 aa6.93□□□□□ -1.3
SYNE2-227ENST00000557307 TRAV8-4A0A0B4J246 113 aa6.92□□□□□ -1.3
SYNE2-227ENST00000557307 SDHAF1A6NFY7 115 aa6.92□□□□□ -1.3
SYNE2-227ENST00000557307 RPS10P46783 165 aaKnown RBP6.92□□□□□ -1.3
SYNE2-227ENST00000557307 FAM231DQ6ZW35 169 aa6.92□□□□□ -1.3
SYNE2-227ENST00000557307 SPACA4Q8TDM5 124 aa6.92□□□□□ -1.3
SYNE2-227ENST00000557307 RNF185Q96GF1 192 aa6.92□□□□□ -1.3
SYNE2-227ENST00000557307 A0A087WYN8 130 aa6.91□□□□□ -1.3
SYNE2-227ENST00000557307 A0A1B0GVG6 124 aa6.91□□□□□ -1.3
SYNE2-227ENST00000557307 TMEM250H0YL14 139 aa6.91□□□□□ -1.3
SYNE2-227ENST00000557307 TSHBP01222 138 aa6.91□□□□□ -1.3
SYNE2-227ENST00000557307 APCSP02743 223 aa6.91□□□□□ -1.3
SYNE2-227ENST00000557307 MT1HL1P0DM35 61 aa6.91□□□□□ -1.3
SYNE2-227ENST00000557307 FGF6P10767 208 aa6.91□□□□□ -1.3
SYNE2-227ENST00000557307 CLRN3Q8NCR9 226 aa6.91□□□□□ -1.3
SYNE2-227ENST00000557307 LINC00526Q96FQ7 95 aa6.91□□□□□ -1.3
SYNE2-227ENST00000557307 TMEM242Q9NWH2 141 aa6.91□□□□□ -1.3
SYNE2-227ENST00000557307 IGHV3-64A0A075B6Q5 118 aa6.9□□□□□ -1.3
SYNE2-227ENST00000557307 SMKR1H3BMG3 65 aa6.9□□□□□ -1.3
SYNE2-227ENST00000557307 NCR2O95944 276 aa6.9□□□□□ -1.3
SYNE2-227ENST00000557307 TAGLN2P37802 199 aaKnown RBP6.9□□□□□ -1.3
SYNE2-227ENST00000557307 FOXI1Q12951 378 aa6.9□□□□□ -1.3
SYNE2-227ENST00000557307 RNASEKQ6P5S7 137 aaKnown RBP6.9□□□□□ -1.3
SYNE2-227ENST00000557307 LINC01551Q86U37 167 aa6.9□□□□□ -1.3
SYNE2-227ENST00000557307 PRSS3P2Q8NHM4 247 aa6.9□□□□□ -1.3
SYNE2-227ENST00000557307 CHCHD10Q8WYQ3 142 aaPredicted RBP6.9□□□□□ -1.3
SYNE2-227ENST00000557307 OXTP01178 125 aa6.89□□□□□ -1.31
SYNE2-227ENST00000557307 SRP19P09132 144 aaKnown RBP6.89□□□□□ -1.31
SYNE2-227ENST00000557307 ESDP10768 282 aa6.89□□□□□ -1.31
SYNE2-227ENST00000557307 BLOC1S1P78537 153 aa6.89□□□□□ -1.31
SYNE2-227ENST00000557307 COX6A2Q02221 97 aa6.89□□□□□ -1.31
SYNE2-227ENST00000557307 ODF1Q14990 250 aa6.89□□□□□ -1.31
SYNE2-227ENST00000557307 AMN1Q8IY45 258 aa6.89□□□□□ -1.31
SYNE2-227ENST00000557307 SMIM7Q9BQ49 75 aa6.89□□□□□ -1.31
SYNE2-227ENST00000557307 TRBV6-5A0A0K0K1A5 114 aa6.88□□□□□ -1.31
SYNE2-227ENST00000557307 HIGD1CA8MV81 97 aa6.88□□□□□ -1.31
SYNE2-227ENST00000557307 A8MWL6 223 aa6.88□□□□□ -1.31
SYNE2-227ENST00000557307 C9JQL5 133 aa6.88□□□□□ -1.31
SYNE2-227ENST00000557307 PHOX2AO14813 284 aa6.88□□□□□ -1.31
SYNE2-227ENST00000557307 CT83Q5H943 113 aa6.88□□□□□ -1.31
SYNE2-227ENST00000557307 AMMECR1LQ6DCA0 310 aa6.88□□□□□ -1.31
SYNE2-227ENST00000557307 FAM210AQ96ND0 272 aa6.88□□□□□ -1.31
SYNE2-227ENST00000557307 A0A096LNI7 61 aa6.87□□□□□ -1.31
SYNE2-227ENST00000557307 GVQW2A0A096LPI5 108 aaPredicted RBP6.87□□□□□ -1.31
SYNE2-227ENST00000557307 IGKV2-24A0A0C4DH68 120 aa6.87□□□□□ -1.31
SYNE2-227ENST00000557307 I3L3M4 83 aa6.87□□□□□ -1.31
SYNE2-227ENST00000557307 CCL25O15444 150 aa6.87□□□□□ -1.31
SYNE2-227ENST00000557307 RAB4AP20338 218 aa6.87□□□□□ -1.31
SYNE2-227ENST00000557307 PMCHP20382 165 aa6.87□□□□□ -1.31
SYNE2-227ENST00000557307 XCL1P47992 114 aa6.87□□□□□ -1.31
SYNE2-227ENST00000557307 POLR2KP53803 58 aaKnown RBP6.87□□□□□ -1.31
SYNE2-227ENST00000557307 EIF5A2Q9GZV4 153 aaKnown RBP6.87□□□□□ -1.31
SYNE2-227ENST00000557307 AP5S1Q9NUS5 200 aa6.87□□□□□ -1.31
SYNE2-227ENST00000557307 PLAC8Q9NZF1 115 aa6.87□□□□□ -1.31
SYNE2-227ENST00000557307 V9GYV3 84 aa6.87□□□□□ -1.31
SYNE2-227ENST00000557307 LINC00959A0A1B0GUT2 108 aa6.86□□□□□ -1.31
SYNE2-227ENST00000557307 ZNF727A8MUV8 499 aa6.86□□□□□ -1.31
SYNE2-227ENST00000557307 SRSF3P84103 164 aaKnown RBP6.86□□□□□ -1.31
SYNE2-227ENST00000557307 RNASE13Q5GAN3 156 aaKnown RBP6.86□□□□□ -1.31
SYNE2-227ENST00000557307 SMIM15Q7Z3B0 74 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms