RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	AQP10	Q96PS8	301 aa		5.3	□□□□□ -1.56
SYNE2-222	ENST00000556725	CCDC32	Q9BV29	185 aa		5.3	□□□□□ -1.56
SYNE2-222	ENST00000556725	ZNF471	Q9BX82	626 aa	Predicted RBP	5.3	□□□□□ -1.56
SYNE2-222	ENST00000556725	IGKV3OR2-268	A0A0C4DH90	116 aa		5.29	□□□□□ -1.56
SYNE2-222	ENST00000556725	INMT-MINDY4	F8WBC2	141 aa		5.29	□□□□□ -1.56
SYNE2-222	ENST00000556725	SNAI2	O43623	268 aa		5.29	□□□□□ -1.56
SYNE2-222	ENST00000556725	MB	P02144	154 aa		5.29	□□□□□ -1.56
SYNE2-222	ENST00000556725	CFAP161	Q6P656	301 aa		5.29	□□□□□ -1.56
SYNE2-222	ENST00000556725	S100Z	Q8WXG8	99 aa		5.29	□□□□□ -1.56
SYNE2-222	ENST00000556725	HIST1H2BA	Q96A08	127 aa		5.29	□□□□□ -1.56
SYNE2-222	ENST00000556725	PSMG3	Q9BT73	122 aa	Predicted RBP	5.29	□□□□□ -1.56
SYNE2-222	ENST00000556725	TMEM243	Q9BU79	118 aa		5.29	□□□□□ -1.56
SYNE2-222	ENST00000556725	FAM231B	A6NCW3	169 aa		5.28	□□□□□ -1.56
SYNE2-222	ENST00000556725		M0QY20	66 aa		5.28	□□□□□ -1.56
SYNE2-222	ENST00000556725	LTA	P01374	205 aa		5.28	□□□□□ -1.56
SYNE2-222	ENST00000556725	SULT1A2	P50226	295 aa		5.28	□□□□□ -1.56
SYNE2-222	ENST00000556725	UBE2G1	P62253	170 aa		5.28	□□□□□ -1.56
SYNE2-222	ENST00000556725	SERF2	P84101	59 aa		5.28	□□□□□ -1.56
SYNE2-222	ENST00000556725	SPANXN1	Q5VSR9	72 aa		5.28	□□□□□ -1.56
SYNE2-222	ENST00000556725	PRR26	Q8N8Z3	221 aa		5.28	□□□□□ -1.56
SYNE2-222	ENST00000556725	ENKUR	Q8TC29	256 aa		5.28	□□□□□ -1.56
SYNE2-222	ENST00000556725	LINC00526	Q96FQ7	95 aa		5.28	□□□□□ -1.56
SYNE2-222	ENST00000556725	FMC1	Q96HJ9	113 aa		5.28	□□□□□ -1.56
SYNE2-222	ENST00000556725	TNFSF18	Q9UNG2	199 aa		5.28	□□□□□ -1.56
SYNE2-222	ENST00000556725	FAT4	Q6V0I7	4981 aa		5.27	□□□□□ -1.57
SYNE2-222	ENST00000556725	SSNA1	O43805	119 aa		5.27	□□□□□ -1.57
SYNE2-222	ENST00000556725	OR5AL1	P0C617	328 aa		5.27	□□□□□ -1.57
SYNE2-222	ENST00000556725	NKX2-5	P52952	324 aa	Predicted RBP	5.27	□□□□□ -1.57
SYNE2-222	ENST00000556725	GVQW2	A0A096LPI5	108 aa	Predicted RBP	5.26	□□□□□ -1.57
SYNE2-222	ENST00000556725	CTXND1	A0A1B0GTU2	59 aa		5.26	□□□□□ -1.57
SYNE2-222	ENST00000556725	MGP	P08493	103 aa		5.26	□□□□□ -1.57
SYNE2-222	ENST00000556725	SMIM17	P0DL12	118 aa		5.26	□□□□□ -1.57
SYNE2-222	ENST00000556725	IFITM3	Q01628	133 aa		5.26	□□□□□ -1.57
SYNE2-222	ENST00000556725	SUMO4	Q6EEV6	95 aa		5.26	□□□□□ -1.57
SYNE2-222	ENST00000556725	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	5.26	□□□□□ -1.57
SYNE2-222	ENST00000556725	NKX6-2	Q9C056	277 aa	Predicted RBP	5.26	□□□□□ -1.57
SYNE2-222	ENST00000556725		A0A1W2PNN7	141 aa		5.25	□□□□□ -1.57
SYNE2-222	ENST00000556725	CXCL1	P09341	107 aa		5.25	□□□□□ -1.57
SYNE2-222	ENST00000556725	PRR4	Q16378	134 aa		5.25	□□□□□ -1.57
SYNE2-222	ENST00000556725	MARVELD1	Q9BSK0	173 aa		5.25	□□□□□ -1.57
SYNE2-222	ENST00000556725	LINC00474	Q9P2X8	69 aa		5.25	□□□□□ -1.57
SYNE2-222	ENST00000556725	PSORS1C2	Q9UIG4	136 aa		5.25	□□□□□ -1.57
SYNE2-222	ENST00000556725		A0A0U1RQV1	116 aa		5.24	□□□□□ -1.57
SYNE2-222	ENST00000556725		B5MCH6	92 aa		5.24	□□□□□ -1.57
SYNE2-222	ENST00000556725	UBE2L6	O14933	153 aa		5.24	□□□□□ -1.57
SYNE2-222	ENST00000556725	AKR1C3	P42330	323 aa		5.24	□□□□□ -1.57
SYNE2-222	ENST00000556725	FOXI1	Q12951	378 aa		5.24	□□□□□ -1.57
SYNE2-222	ENST00000556725	CST9LP1	Q5W188	147 aa		5.24	□□□□□ -1.57
SYNE2-222	ENST00000556725	RPL7L1	Q6DKI1	246 aa	Known RBP	5.24	□□□□□ -1.57
SYNE2-222	ENST00000556725	ZNF664	Q8N3J9	261 aa		5.24	□□□□□ -1.57
SYNE2-222	ENST00000556725	AP1S3	Q96PC3	154 aa		5.24	□□□□□ -1.57
SYNE2-222	ENST00000556725	MLST8	Q9BVC4	326 aa		5.24	□□□□□ -1.57
SYNE2-222	ENST00000556725	TRAV26-2	A0A0B4J265	109 aa		5.23	□□□□□ -1.57
SYNE2-222	ENST00000556725	AMT	P48728	403 aa		5.23	□□□□□ -1.57
SYNE2-222	ENST00000556725	PTTG1IP	P53801	180 aa		5.23	□□□□□ -1.57
SYNE2-222	ENST00000556725	CACNG7	P62955	275 aa		5.23	□□□□□ -1.57
SYNE2-222	ENST00000556725	GAGE2B	Q13066	116 aa		5.23	□□□□□ -1.57
SYNE2-222	ENST00000556725		Q5BKY6	102 aa		5.23	□□□□□ -1.57
SYNE2-222	ENST00000556725	RASL11A	Q6T310	242 aa		5.23	□□□□□ -1.57
SYNE2-222	ENST00000556725	PGLYRP4	Q96LB8	373 aa		5.23	□□□□□ -1.57
SYNE2-222	ENST00000556725	CARD19	Q96LW7	228 aa		5.23	□□□□□ -1.57
SYNE2-222	ENST00000556725	UPK1B	O75841	260 aa		5.22	□□□□□ -1.57
SYNE2-222	ENST00000556725	MT-ND6	P03923	174 aa		5.22	□□□□□ -1.57
SYNE2-222	ENST00000556725	FHIT	P49789	147 aa		5.22	□□□□□ -1.57
SYNE2-222	ENST00000556725	COTL1	Q14019	142 aa		5.22	□□□□□ -1.57
SYNE2-222	ENST00000556725	C1orf137	Q5JT78	98 aa		5.22	□□□□□ -1.57
SYNE2-222	ENST00000556725	PHF5A	Q7RTV0	110 aa	Known RBP	5.22	□□□□□ -1.57
SYNE2-222	ENST00000556725	BAGE2	Q86Y30	109 aa		5.22	□□□□□ -1.57
SYNE2-222	ENST00000556725	STOML3	Q8TAV4	291 aa		5.22	□□□□□ -1.57
SYNE2-222	ENST00000556725	TPPP3	Q9BW30	176 aa		5.22	□□□□□ -1.57
SYNE2-222	ENST00000556725	KRTAP3-1	Q9BYR8	98 aa		5.22	□□□□□ -1.57
SYNE2-222	ENST00000556725	NIT2	Q9NQR4	276 aa		5.22	□□□□□ -1.57
SYNE2-222	ENST00000556725	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	5.21	□□□□□ -1.58
SYNE2-222	ENST00000556725	IGKV2-29	A2NJV5	120 aa	Predicted RBP	5.21	□□□□□ -1.58
SYNE2-222	ENST00000556725	MAP1LC3B2	A6NCE7	125 aa		5.21	□□□□□ -1.58
SYNE2-222	ENST00000556725	PAGE4	O60829	102 aa		5.21	□□□□□ -1.58
SYNE2-222	ENST00000556725	XCL1	P47992	114 aa		5.21	□□□□□ -1.58
SYNE2-222	ENST00000556725	SYCN	Q0VAF6	134 aa		5.21	□□□□□ -1.58
SYNE2-222	ENST00000556725	RGS21	Q2M5E4	152 aa		5.21	□□□□□ -1.58
SYNE2-222	ENST00000556725	MAP1LC3B	Q9GZQ8	125 aa		5.21	□□□□□ -1.58
SYNE2-222	ENST00000556725	IGHV1-58	A0A0C4DH39	117 aa		5.2	□□□□□ -1.58
SYNE2-222	ENST00000556725	CCL25	O15444	150 aa		5.2	□□□□□ -1.58
SYNE2-222	ENST00000556725	IGLC6	P0CF74	106 aa		5.2	□□□□□ -1.58
SYNE2-222	ENST00000556725	BCL2	P10415	239 aa		5.2	□□□□□ -1.58
SYNE2-222	ENST00000556725	DEFA1	P59665	94 aa		5.2	□□□□□ -1.58
SYNE2-222	ENST00000556725	C9orf116	Q5BN46	136 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE2-222	ENST00000556725	AKR1C8P	Q5T2L2	129 aa		5.2	□□□□□ -1.58
SYNE2-222	ENST00000556725	AMMECR1L	Q6DCA0	310 aa		5.2	□□□□□ -1.58
SYNE2-222	ENST00000556725	RNASEK	Q6P5S7	137 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-222	ENST00000556725		Q6ZNX1	250 aa		5.2	□□□□□ -1.58
SYNE2-222	ENST00000556725	KRTAP11-1	Q8IUC1	163 aa		5.2	□□□□□ -1.58
SYNE2-222	ENST00000556725	LOC107984640	A0A0U1RRK4	108 aa		5.19	□□□□□ -1.58
SYNE2-222	ENST00000556725	LINC00959	A0A1B0GUT2	108 aa		5.19	□□□□□ -1.58
SYNE2-222	ENST00000556725	IGLV7-43	P04211	117 aa		5.19	□□□□□ -1.58
SYNE2-222	ENST00000556725	S100A9	P06702	114 aa	Known RBP	5.19	□□□□□ -1.58
SYNE2-222	ENST00000556725	FGF6	P10767	208 aa		5.19	□□□□□ -1.58
SYNE2-222	ENST00000556725	NTF3	P20783	257 aa		5.19	□□□□□ -1.58
SYNE2-222	ENST00000556725	FER1L6-AS1	Q8NA97	138 aa		5.19	□□□□□ -1.58
SYNE2-222	ENST00000556725	OR5A1	Q8NGJ0	315 aa		5.19	□□□□□ -1.58
SYNE2-222	ENST00000556725	DIRC1	Q969H9	104 aa		5.19	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms