RNA–Protein interactions for RNA: ENST00000554258.1

NEK9-204, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-204ENST00000554258 FAM104BQ5XKR9 115 aa11.23□□□□□ -0.61
NEK9-204ENST00000554258 SCXQ7RTU7 201 aa11.23□□□□□ -0.61
NEK9-204ENST00000554258 YPEL4Q96NS1 127 aa11.23□□□□□ -0.61
NEK9-204ENST00000554258 PRADC1Q9BSG0 188 aa11.23□□□□□ -0.61
NEK9-204ENST00000554258 Q9UF83 564 aa11.23□□□□□ -0.61
NEK9-204ENST00000554258 LINC00694P0DN24 101 aa11.22□□□□□ -0.61
NEK9-204ENST00000554258 SUMO4Q6EEV6 95 aa11.22□□□□□ -0.61
NEK9-204ENST00000554258 URGCP-MRPS24S4R325 110 aa11.22□□□□□ -0.61
NEK9-204ENST00000554258 LOC100131303A0A0U1RQF7 123 aa11.21□□□□□ -0.61
NEK9-204ENST00000554258 F5H697 171 aa11.21□□□□□ -0.61
NEK9-204ENST00000554258 MGPP08493 103 aa11.21□□□□□ -0.61
NEK9-204ENST00000554258 GYPEP15421 78 aa11.21□□□□□ -0.61
NEK9-204ENST00000554258 ELOBQ15370 118 aa11.21□□□□□ -0.61
NEK9-204ENST00000554258 ZNF56Q15929 161 aa11.21□□□□□ -0.61
NEK9-204ENST00000554258 MRPL23Q16540 153 aaKnown RBP11.21□□□□□ -0.61
NEK9-204ENST00000554258 TRBV24-1A0A075B6N3 115 aa11.2□□□□□ -0.62
NEK9-204ENST00000554258 AMN1Q8IY45 258 aa11.2□□□□□ -0.62
NEK9-204ENST00000554258 SMCO4Q9NRQ5 59 aa11.2□□□□□ -0.62
NEK9-204ENST00000554258 ICOSQ9Y6W8 199 aa11.2□□□□□ -0.62
NEK9-204ENST00000554258 H7C1H1 209 aa11.19□□□□□ -0.62
NEK9-204ENST00000554258 S100A1P23297 94 aa11.19□□□□□ -0.62
NEK9-204ENST00000554258 NEXN-AS1Q8NBZ9 246 aa11.19□□□□□ -0.62
NEK9-204ENST00000554258 MRAP2Q96G30 205 aa11.19□□□□□ -0.62
NEK9-204ENST00000554258 DNAJC30Q96LL9 226 aa11.19□□□□□ -0.62
NEK9-204ENST00000554258 COX19Q49B96 90 aa11.18□□□□□ -0.62
NEK9-204ENST00000554258 MRPL51Q4U2R6 128 aaKnown RBP11.18□□□□□ -0.62
NEK9-204ENST00000554258 TMEM136Q6ZRR5 245 aa11.18□□□□□ -0.62
NEK9-204ENST00000554258 SH2D6Q7Z4S9 175 aa11.18□□□□□ -0.62
NEK9-204ENST00000554258 GNB1LQ9BYB4 327 aa11.18□□□□□ -0.62
NEK9-204ENST00000554258 NIT2Q9NQR4 276 aa11.18□□□□□ -0.62
NEK9-204ENST00000554258 TRBV7-3A0A075B6L6 115 aa11.17□□□□□ -0.62
NEK9-204ENST00000554258 K7EP13 123 aa11.17□□□□□ -0.62
NEK9-204ENST00000554258 ATP6V1G1O75348 118 aa11.17□□□□□ -0.62
NEK9-204ENST00000554258 TGIF2-C20orf24A0A0A6YYL0 155 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 TRAV26-2A0A0B4J265 109 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 TRBV6-5A0A0K0K1A5 114 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 GAGE12JA6NER3 117 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 SRIP30626 198 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 TIRAPP58753 221 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 UBE2D3P61077 147 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 UBE2D2P62837 147 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 RPL36AP83881 106 aaKnown RBP11.16□□□□□ -0.62
NEK9-204ENST00000554258 GAGE1Q13065 139 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 GAGE4Q13068 117 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 GAGE5Q13069 117 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 GAGE13Q4V321 117 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 NEGR1Q7Z3B1 354 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 CBLN2Q8IUK8 224 aa11.16□□□□□ -0.62
NEK9-204ENST00000554258 RPL36ALQ969Q0 106 aaKnown RBP11.16□□□□□ -0.62
NEK9-204ENST00000554258 HNRNPA3P51991 378 aaKnown RBP11.15□□□□□ -0.62
NEK9-204ENST00000554258 HLA-DQA1P01909 254 aa11.14□□□□□ -0.63
NEK9-204ENST00000554258 PPBPP02775 128 aa11.14□□□□□ -0.63
NEK9-204ENST00000554258 LYPD5Q6UWN5 251 aa11.14□□□□□ -0.63
NEK9-204ENST00000554258 NRACQ8N912 160 aa11.14□□□□□ -0.63
NEK9-204ENST00000554258 ATP6V0E2Q8NHE4 81 aa11.14□□□□□ -0.63
NEK9-204ENST00000554258 RPS10P46783 165 aaKnown RBP11.13□□□□□ -0.63
NEK9-204ENST00000554258 RPL37AP61513 92 aaKnown RBP11.13□□□□□ -0.63
NEK9-204ENST00000554258 RPL39LQ96EH5 51 aaKnown RBP11.13□□□□□ -0.63
NEK9-204ENST00000554258 CHAC1Q9BUX1 264 aa11.13□□□□□ -0.63
NEK9-204ENST00000554258 SMKR1H3BMG3 65 aa11.12□□□□□ -0.63
NEK9-204ENST00000554258 PPP1R17O96001 155 aa11.12□□□□□ -0.63
NEK9-204ENST00000554258 MT-ND6P03923 174 aa11.12□□□□□ -0.63
NEK9-204ENST00000554258 GTSF1LQ9H1H1 148 aa11.12□□□□□ -0.63
NEK9-204ENST00000554258 PHOX2AO14813 284 aa11.11□□□□□ -0.63
NEK9-204ENST00000554258 CKS2P33552 79 aa11.11□□□□□ -0.63
NEK9-204ENST00000554258 POLR2KP53803 58 aaKnown RBP11.11□□□□□ -0.63
NEK9-204ENST00000554258 OR10J3Q5JRS4 329 aa11.11□□□□□ -0.63
NEK9-204ENST00000554258 LELP1Q5T871 98 aa11.11□□□□□ -0.63
NEK9-204ENST00000554258 DAZ4Q86SG3 579 aaKnown RBP11.11□□□□□ -0.63
NEK9-204ENST00000554258 WFDC10BQ8IUB3 73 aa11.11□□□□□ -0.63
NEK9-204ENST00000554258 C10orf126Q8N4M7 172 aa11.11□□□□□ -0.63
NEK9-204ENST00000554258 DAZ3Q9NR90 486 aaKnown RBP11.11□□□□□ -0.63
NEK9-204ENST00000554258 COLCA2A8K830 154 aa11.1□□□□□ -0.63
NEK9-204ENST00000554258 D6R8Y8 96 aa11.1□□□□□ -0.63
NEK9-204ENST00000554258 SCO1O75880 301 aa11.1□□□□□ -0.63
NEK9-204ENST00000554258 NCR2O95944 276 aa11.1□□□□□ -0.63
NEK9-204ENST00000554258 RPL32P62910 135 aaKnown RBP11.1□□□□□ -0.63
NEK9-204ENST00000554258 ORMDL3Q8N138 153 aa11.1□□□□□ -0.63
NEK9-204ENST00000554258 CIRBP-AS1Q8TBR5 109 aa11.1□□□□□ -0.63
NEK9-204ENST00000554258 C20orf78Q9BR46 151 aa11.1□□□□□ -0.63
NEK9-204ENST00000554258 PRSS47A8MTI9 375 aa11.09□□□□□ -0.63
NEK9-204ENST00000554258 TNFRSF6BO95407 300 aa11.09□□□□□ -0.63
NEK9-204ENST00000554258 APCSP02743 223 aa11.09□□□□□ -0.63
NEK9-204ENST00000554258 ST20Q9HBF5 79 aa11.09□□□□□ -0.63
NEK9-204ENST00000554258 LAMTOR2Q9Y2Q5 125 aa11.09□□□□□ -0.63
NEK9-204ENST00000554258 SDHAF1A6NFY7 115 aa11.08□□□□□ -0.64
NEK9-204ENST00000554258 LINC01620Q4KN68 170 aa11.08□□□□□ -0.64
NEK9-204ENST00000554258 PRELID3AQ96N28 172 aa11.08□□□□□ -0.64
NEK9-204ENST00000554258 MRPL18Q9H0U6 180 aaKnown RBP11.08□□□□□ -0.64
NEK9-204ENST00000554258 TRBV27A0A0K0K1C4 114 aa11.07□□□□□ -0.64
NEK9-204ENST00000554258 NPYP01303 97 aa11.07□□□□□ -0.64
NEK9-204ENST00000554258 SUMO2P61956 95 aaKnown RBP11.07□□□□□ -0.64
NEK9-204ENST00000554258 TMEM97Q5BJF2 176 aa11.07□□□□□ -0.64
NEK9-204ENST00000554258 NTM-AS1Q6ZSK4 140 aa11.07□□□□□ -0.64
NEK9-204ENST00000554258 IGHV3-38A0A0C4DH36 116 aa11.06□□□□□ -0.64
NEK9-204ENST00000554258 FABP9Q0Z7S8 132 aa11.06□□□□□ -0.64
NEK9-204ENST00000554258 KIAA1644Q3SXP7 199 aa11.06□□□□□ -0.64
NEK9-204ENST00000554258 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.06□□□□□ -0.64
NEK9-204ENST00000554258 TRAPPC1Q9Y5R8 145 aa11.06□□□□□ -0.64
NEK9-204ENST00000554258 MUC2Q02817 5179 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms