RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CST9LQ9H4G1 147 aa18.85■□□□□ 0.61
CCDC88C-205ENST00000553403 HINT1P49773 126 aaPredicted RBP18.85■□□□□ 0.61
CCDC88C-205ENST00000553403 PAPPA-AS1Q5QFB9 102 aa18.85■□□□□ 0.61
CCDC88C-205ENST00000553403 COL5A1-AS1Q5SY13 56 aa18.85■□□□□ 0.61
CCDC88C-205ENST00000553403 TCTAP57738 103 aa18.84■□□□□ 0.61
CCDC88C-205ENST00000553403 IGKV2D-26A0A0A0MRZ7 120 aa18.83■□□□□ 0.61
CCDC88C-205ENST00000553403 PCP2Q8IVA1 136 aa18.83■□□□□ 0.61
CCDC88C-205ENST00000553403 PYGO1Q9Y3Y4 419 aa18.83■□□□□ 0.61
CCDC88C-205ENST00000553403 K7EQD1 137 aa18.82■□□□□ 0.6
CCDC88C-205ENST00000553403 GAGE12BA1L429 117 aa18.81■□□□□ 0.6
CCDC88C-205ENST00000553403 GAGE7O76087 117 aa18.81■□□□□ 0.6
CCDC88C-205ENST00000553403 NPSP0C0P6 89 aa18.81■□□□□ 0.6
CCDC88C-205ENST00000553403 GAGE12FP0CL80 117 aa18.81■□□□□ 0.6
CCDC88C-205ENST00000553403 GAGE12GP0CL81 117 aa18.81■□□□□ 0.6
CCDC88C-205ENST00000553403 GAGE12IP0CL82 117 aa18.81■□□□□ 0.6
CCDC88C-205ENST00000553403 COTL1Q14019 142 aa18.81■□□□□ 0.6
CCDC88C-205ENST00000553403 KIR2DL5BQ8NHK3 375 aa18.81■□□□□ 0.6
CCDC88C-205ENST00000553403 IGLV4-69A0A075B6H9 119 aa18.8■□□□□ 0.6
CCDC88C-205ENST00000553403 SMIM9A6NGZ8 99 aa18.8■□□□□ 0.6
CCDC88C-205ENST00000553403 CHCHD7Q9BUK0 85 aa18.8■□□□□ 0.6
CCDC88C-205ENST00000553403 FBN3Q75N90 2809 aa18.8■□□□□ 0.6
CCDC88C-205ENST00000553403 TRBV7-3A0A075B6L6 115 aa18.79■□□□□ 0.6
CCDC88C-205ENST00000553403 TRGV2A0A075B6R0 118 aa18.79■□□□□ 0.6
CCDC88C-205ENST00000553403 RPL36AP83881 106 aaKnown RBP18.79■□□□□ 0.6
CCDC88C-205ENST00000553403 MPV17L2Q567V2 206 aa18.79■□□□□ 0.6
CCDC88C-205ENST00000553403 C3orf56Q8N813 242 aa18.79■□□□□ 0.6
CCDC88C-205ENST00000553403 RPL36ALQ969Q0 106 aaKnown RBP18.79■□□□□ 0.6
CCDC88C-205ENST00000553403 CRYBA4P53673 196 aa18.78■□□□□ 0.6
CCDC88C-205ENST00000553403 TMEM97Q5BJF2 176 aa18.78■□□□□ 0.6
CCDC88C-205ENST00000553403 ZNRF2Q8NHG8 242 aa18.78■□□□□ 0.6
CCDC88C-205ENST00000553403 IGLV4-3A0A075B6K6 122 aa18.77■□□□□ 0.6
CCDC88C-205ENST00000553403 PHLDA1Q8WV24 401 aaPredicted RBP18.77■□□□□ 0.6
CCDC88C-205ENST00000553403 APOC4P55056 127 aa18.76■□□□□ 0.59
CCDC88C-205ENST00000553403 BVES-AS1Q5T3Y7 98 aa18.76■□□□□ 0.59
CCDC88C-205ENST00000553403 SLC25A29Q8N8R3 303 aa18.76■□□□□ 0.59
CCDC88C-205ENST00000553403 SPANXA1Q9NS26 97 aa18.76■□□□□ 0.59
CCDC88C-205ENST00000553403 X6R8D5 127 aa18.76■□□□□ 0.59
CCDC88C-205ENST00000553403 C11orf86A6NJI1 115 aa18.76■□□□□ 0.59
CCDC88C-205ENST00000553403 OPRPNQ99935 248 aaPredicted RBP18.76■□□□□ 0.59
CCDC88C-205ENST00000553403 IGHV3-38A0A0C4DH36 116 aa18.75■□□□□ 0.59
CCDC88C-205ENST00000553403 E9PLD3 99 aa18.75■□□□□ 0.59
CCDC88C-205ENST00000553403 DAZ4Q86SG3 579 aaKnown RBP18.75■□□□□ 0.59
CCDC88C-205ENST00000553403 VCX2Q9H322 139 aa18.75■□□□□ 0.59
CCDC88C-205ENST00000553403 DAZ3Q9NR90 486 aaKnown RBP18.75■□□□□ 0.59
CCDC88C-205ENST00000553403 HIGD1BQ9P298 99 aa18.75■□□□□ 0.59
CCDC88C-205ENST00000553403 ANK2Q01484 3957 aa18.74■□□□□ 0.59
CCDC88C-205ENST00000553403 TRBV6-4A0A1B0GX49 114 aa18.74■□□□□ 0.59
CCDC88C-205ENST00000553403 LINC00612Q8N6U2 182 aa18.74■□□□□ 0.59
CCDC88C-205ENST00000553403 NFE4Q86UQ8 179 aa18.73■□□□□ 0.59
CCDC88C-205ENST00000553403 UBE2D3P61077 147 aa18.73■□□□□ 0.59
CCDC88C-205ENST00000553403 UBE2D2P62837 147 aa18.73■□□□□ 0.59
CCDC88C-205ENST00000553403 AMELXQ99217 191 aa18.73■□□□□ 0.59
CCDC88C-205ENST00000553403 HSD52Q0P140 79 aa18.72■□□□□ 0.59
CCDC88C-205ENST00000553403 OR11H2Q8NH07 326 aa18.72■□□□□ 0.59
CCDC88C-205ENST00000553403 UBE2D4Q9Y2X8 147 aa18.72■□□□□ 0.59
CCDC88C-205ENST00000553403 HERVK_113P61574 105 aa18.71■□□□□ 0.59
CCDC88C-205ENST00000553403 TTTY13Q9BZ97 58 aa18.71■□□□□ 0.59
CCDC88C-205ENST00000553403 TRGV4A0A0C4DH28 118 aa18.7■□□□□ 0.58
CCDC88C-205ENST00000553403 EMP1P54849 157 aa18.7■□□□□ 0.58
CCDC88C-205ENST00000553403 FAM104AQ969W3 186 aa18.7■□□□□ 0.58
CCDC88C-205ENST00000553403 TRAV8-6A0A0B4J262 113 aa18.69■□□□□ 0.58
CCDC88C-205ENST00000553403 TIMM21Q9BVV7 248 aa18.69■□□□□ 0.58
CCDC88C-205ENST00000553403 ZMAT5Q9UDW3 170 aaKnown RBP18.69■□□□□ 0.58
CCDC88C-205ENST00000553403 IGKV2D-29A0A075B6S2 120 aaPredicted RBP18.69■□□□□ 0.58
CCDC88C-205ENST00000553403 IGKV2-29A2NJV5 120 aaPredicted RBP18.69■□□□□ 0.58
CCDC88C-205ENST00000553403 GAGE12JA6NER3 117 aa18.69■□□□□ 0.58
CCDC88C-205ENST00000553403 GAGE1Q13065 139 aa18.69■□□□□ 0.58
CCDC88C-205ENST00000553403 GAGE4Q13068 117 aa18.69■□□□□ 0.58
CCDC88C-205ENST00000553403 GAGE5Q13069 117 aa18.69■□□□□ 0.58
CCDC88C-205ENST00000553403 FHL2Q14192 279 aa18.69■□□□□ 0.58
CCDC88C-205ENST00000553403 GAGE13Q4V321 117 aa18.69■□□□□ 0.58
CCDC88C-205ENST00000553403 MAPKAPK5-AS1Q8N8E1 139 aa18.69■□□□□ 0.58
CCDC88C-205ENST00000553403 TRBV25-1A0A075B6N4 114 aa18.68■□□□□ 0.58
CCDC88C-205ENST00000553403 PRADC1Q9BSG0 188 aa18.68■□□□□ 0.58
CCDC88C-205ENST00000553403 SHISA2Q6UWI4 295 aa18.67■□□□□ 0.58
CCDC88C-205ENST00000553403 CHAC1Q9BUX1 264 aa18.66■□□□□ 0.58
CCDC88C-205ENST00000553403 MRPS36P82909 103 aaKnown RBP18.66■□□□□ 0.58
CCDC88C-205ENST00000553403 MYMXA0A1B0GTQ4 84 aa18.65■□□□□ 0.58
CCDC88C-205ENST00000553403 SEC11AP67812 179 aa18.65■□□□□ 0.58
CCDC88C-205ENST00000553403 TMEM170BQ5T4T1 132 aa18.65■□□□□ 0.58
CCDC88C-205ENST00000553403 CEMP1Q6PRD7 247 aaPredicted RBP18.65■□□□□ 0.58
CCDC88C-205ENST00000553403 GTSF1LQ9H1H1 148 aa18.65■□□□□ 0.58
CCDC88C-205ENST00000553403 LYRM9A8MSI8 78 aa18.64■□□□□ 0.57
CCDC88C-205ENST00000553403 DEFB135Q30KP9 77 aa18.64■□□□□ 0.57
CCDC88C-205ENST00000553403 TENM1Q9UKZ4 2725 aa18.64■□□□□ 0.57
CCDC88C-205ENST00000553403 DEFB130BP0DP73 79 aa18.63■□□□□ 0.57
CCDC88C-205ENST00000553403 DEFB130AP0DP74 79 aa18.63■□□□□ 0.57
CCDC88C-205ENST00000553403 NTM-AS1Q6ZSK4 140 aa18.63■□□□□ 0.57
CCDC88C-205ENST00000553403 ORAOV1Q8WV07 137 aa18.63■□□□□ 0.57
CCDC88C-205ENST00000553403 IGHV4-30-4P0DP06 118 aa18.62■□□□□ 0.57
CCDC88C-205ENST00000553403 SMAGPQ0VAQ4 97 aa18.62■□□□□ 0.57
CCDC88C-205ENST00000553403 A0A0J9YXV3 536 aa18.61■□□□□ 0.57
CCDC88C-205ENST00000553403 ZNF22P17026 224 aaPredicted RBP18.61■□□□□ 0.57
CCDC88C-205ENST00000553403 SBSPONQ8IVN8 264 aa18.61■□□□□ 0.57
CCDC88C-205ENST00000553403 ZNF25P17030 456 aaPredicted RBP18.6■□□□□ 0.57
CCDC88C-205ENST00000553403 Q6ZUT4 128 aa18.6■□□□□ 0.57
CCDC88C-205ENST00000553403 LOC100131303A0A0U1RQF7 123 aa18.6■□□□□ 0.57
CCDC88C-205ENST00000553403 TMEM223A0PJW6 202 aa18.6■□□□□ 0.57
CCDC88C-205ENST00000553403 LINC00694P0DN24 101 aa18.6■□□□□ 0.57
CCDC88C-205ENST00000553403 CSDC2Q9Y534 153 aaKnown RBP18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms