RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 Q1RN00 199 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 FAM19A4Q96LR4 140 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 LITAFQ99732 161 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 MDFICQ9P1T7 246 aa3.6□□□□□ -1.83
LIMA1-214ENST00000552783 H7C423 109 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 IFITM1P13164 125 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 ID1P41134 155 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 SYNJ2BPP57105 145 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 HERVK_113P61574 105 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 HIST2H2BDQ6DRA6 164 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 DAND5Q8N907 189 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 SPXQ9BT56 116 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 KLK9Q9UKQ9 250 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 IGHV4OR15-8A0A075B7B6 117 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 A0A087WW49 117 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 TMEM262E9PQX1 116 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 PRM2P04554 102 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 SPINK13Q1W4C9 94 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 POM121L12Q8N7R1 296 aa3.59□□□□□ -1.83
LIMA1-214ENST00000552783 MRPL53Q96EL3 112 aaKnown RBP3.59□□□□□ -1.83
LIMA1-214ENST00000552783 A0A0J9YXY3 114 aa3.59□□□□□ -1.84
LIMA1-214ENST00000552783 IGHV4-59P01825 116 aa3.59□□□□□ -1.84
LIMA1-214ENST00000552783 PRSS2P07478 247 aa3.59□□□□□ -1.84
LIMA1-214ENST00000552783 MSMBP08118 114 aa3.59□□□□□ -1.84
LIMA1-214ENST00000552783 PROK1P58294 105 aa3.59□□□□□ -1.84
LIMA1-214ENST00000552783 LYRM7Q5U5X0 104 aa3.59□□□□□ -1.84
LIMA1-214ENST00000552783 C10orf99Q6UWK7 81 aa3.59□□□□□ -1.84
LIMA1-214ENST00000552783 CFAP46Q8IYW2 2715 aa3.59□□□□□ -1.84
LIMA1-214ENST00000552783 DAZ1Q9NQZ3 744 aaKnown RBP3.59□□□□□ -1.84
LIMA1-214ENST00000552783 TRBV27A0A0K0K1C4 114 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 PRB1P04280 392 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 SNRPD3P62318 126 aaKnown RBP3.58□□□□□ -1.84
LIMA1-214ENST00000552783 TIMM17AQ99595 171 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 TRAV8-4A0A0B4J246 113 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 A0A0B4J2C4 111 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 FAM223BA6NKX1 122 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 KNCNA6PVL3 124 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 M0QY20 66 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 M0R2P5 195 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 LGALS9O00182 355 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 VCYO14598 125 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 OVOL1O14753 267 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 NXPH4O95158 308 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 FAM223AQ8IWN6 122 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 A0A1W2PRX2 142 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 LEPROTO15243 131 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 IGHV3-30-3P0DP02 117 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 DEFB136Q30KP8 78 aa3.58□□□□□ -1.84
LIMA1-214ENST00000552783 IGLV4-3A0A075B6K6 122 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 TRBV10-2A0A0K0K1G8 114 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 H3BMM0 161 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 ATXN8Q156A1 80 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 MEIG1Q5JSS6 88 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 C2orf82Q6UX34 121 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 UBE2WQ96B02 151 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 TMEM141Q96I45 108 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 LENEPQ9Y5L5 61 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 NF1P21359 2839 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 B4DSR2 109 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 NDUFA4O00483 81 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 IGHG2P01859 326 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 RPL13AP40429 203 aaKnown RBP3.57□□□□□ -1.84
LIMA1-214ENST00000552783 KLK9Q2XQG4 91 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 APRG1Q8IVJ8 170 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 IGSF10Q6WRI0 2623 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 KLLNB2CW77 178 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 DEFB112Q30KQ8 113 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 C19orf54Q5BKX5 351 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 PAPPA-AS1Q5QFB9 102 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 SMCR5Q8TEV8 140 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 DYNLRB2Q8TF09 96 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 USMG5Q96IX5 58 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 FAM110AQ9BQ89 295 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 PPDPFQ9H3Y8 114 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 ICOSQ9Y6W8 199 aa3.57□□□□□ -1.84
LIMA1-214ENST00000552783 TRBV30A0A0K0K1B3 111 aa3.56□□□□□ -1.84
LIMA1-214ENST00000552783 C20orf203Q8NBC4 194 aa3.56□□□□□ -1.84
LIMA1-214ENST00000552783 FASNP49327 2511 aaKnown RBP3.56□□□□□ -1.84
LIMA1-214ENST00000552783 CHD6Q8TD26 2715 aa3.56□□□□□ -1.84
LIMA1-214ENST00000552783 I3L3M4 83 aa3.56□□□□□ -1.84
LIMA1-214ENST00000552783 M0QXV9 152 aa3.56□□□□□ -1.84
LIMA1-214ENST00000552783 MED14OSP0DP75 135 aa3.56□□□□□ -1.84
LIMA1-214ENST00000552783 DGAT2L7PQ6IED9 249 aa3.56□□□□□ -1.84
LIMA1-214ENST00000552783 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.56□□□□□ -1.84
LIMA1-214ENST00000552783 LINC01587Q99440 93 aa3.56□□□□□ -1.84
LIMA1-214ENST00000552783 IGHV3-16A0A0C4DH30 117 aa3.56□□□□□ -1.84
LIMA1-214ENST00000552783 A0A0U1RRA0 63 aa3.56□□□□□ -1.84
LIMA1-214ENST00000552783 AVPP01185 164 aa3.56□□□□□ -1.84
LIMA1-214ENST00000552783 C10orf105Q8TEF2 133 aa3.56□□□□□ -1.84
LIMA1-214ENST00000552783 TRGV11A0A075B6L2 103 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 DEFB131AP59861 70 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 Q6Q795 121 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 Q6ZSN1 163 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 Q8N2B8 174 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 DCANP1Q8TF63 244 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 KLK5Q9Y337 293 aaPredicted RBP3.55□□□□□ -1.84
LIMA1-214ENST00000552783 TEX15Q9BXT5 2789 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 TRBV6-5A0A0K0K1A5 114 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 PPP1R17O96001 155 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 NSUN5P1Q3KNT7 163 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms