RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 SPRNQ5BIV9 151 aa2.12□□□□□ -2.07
LIMA1-210ENST00000552045 GDF5OSQ5U4N7 250 aa2.12□□□□□ -2.07
LIMA1-210ENST00000552045 LINC00269Q8N2A0 174 aa2.12□□□□□ -2.07
LIMA1-210ENST00000552045 OR10AG1Q8NH19 301 aa2.12□□□□□ -2.07
LIMA1-210ENST00000552045 CLEC2BQ92478 149 aa2.12□□□□□ -2.07
LIMA1-210ENST00000552045 CST11Q9H112 138 aa2.12□□□□□ -2.07
LIMA1-210ENST00000552045 ZNF469Q96JG9 3925 aaPredicted RBP2.11□□□□□ -2.07
LIMA1-210ENST00000552045 BORCS7-ASMTA0A0B4J1R7 106 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 H3BRM9 83 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 DPM2O94777 84 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 DNAL4O96015 105 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 TRACP01848 142 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 APODP05090 189 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 SDC4P31431 198 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 DIAPH2-AS1Q14236 149 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 Q5XG85 94 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 FOXI2Q6ZQN5 318 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 OR5A2Q8NGI9 324 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 LINC00526Q96FQ7 95 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 VPS13CQ709C8 3753 aa2.11□□□□□ -2.07
LIMA1-210ENST00000552045 KIAA1109Q2LD37 5005 aa2.1□□□□□ -2.07
LIMA1-210ENST00000552045 PRKDCP78527 4128 aaKnown RBP2.1□□□□□ -2.07
LIMA1-210ENST00000552045 ARPC5O15511 151 aa2.1□□□□□ -2.07
LIMA1-210ENST00000552045 ANGP03950 147 aaKnown RBP2.1□□□□□ -2.07
LIMA1-210ENST00000552045 SAA1P0DJI8 122 aaPredicted RBP2.1□□□□□ -2.07
LIMA1-210ENST00000552045 MRPL57Q9BQC6 102 aaKnown RBP2.1□□□□□ -2.07
LIMA1-210ENST00000552045 FKBP11Q9NYL4 201 aa2.1□□□□□ -2.07
LIMA1-210ENST00000552045 PI4KAP42356 2102 aa2.09□□□□□ -2.07
LIMA1-210ENST00000552045 EML5Q05BV3 1969 aa2.09□□□□□ -2.07
LIMA1-210ENST00000552045 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.09□□□□□ -2.07
LIMA1-210ENST00000552045 MIR22HGQ0VDD5 57 aa2.09□□□□□ -2.07
LIMA1-210ENST00000552045 OR51A4Q8NGJ6 313 aa2.09□□□□□ -2.07
LIMA1-210ENST00000552045 OR5AK2Q8NH90 309 aa2.09□□□□□ -2.07
LIMA1-210ENST00000552045 TMEM14CQ9P0S9 112 aa2.09□□□□□ -2.07
LIMA1-210ENST00000552045 POLEQ07864 2286 aa2.08□□□□□ -2.08
LIMA1-210ENST00000552045 A0A096LPI6 279 aa2.08□□□□□ -2.08
LIMA1-210ENST00000552045 PIN1P1O15428 100 aa2.08□□□□□ -2.08
LIMA1-210ENST00000552045 SCTP09683 121 aa2.08□□□□□ -2.08
LIMA1-210ENST00000552045 LINC00322Q6ZN03 302 aaPredicted RBP2.08□□□□□ -2.08
LIMA1-210ENST00000552045 TMEM138Q9NPI0 162 aa2.08□□□□□ -2.08
LIMA1-210ENST00000552045 PKDREJQ9NTG1 2253 aa2.08□□□□□ -2.08
LIMA1-210ENST00000552045 DSPPQ9NZW4 1301 aa2.08□□□□□ -2.08
LIMA1-210ENST00000552045 MAP1AP78559 2803 aaPredicted RBP2.07□□□□□ -2.08
LIMA1-210ENST00000552045 CHD3Q12873 2000 aaKnown RBP2.07□□□□□ -2.08
LIMA1-210ENST00000552045 TMEM189A5PLL7 270 aa2.07□□□□□ -2.08
LIMA1-210ENST00000552045 C9JAW5 83 aa2.07□□□□□ -2.08
LIMA1-210ENST00000552045 CMPK1P30085 196 aa2.07□□□□□ -2.08
LIMA1-210ENST00000552045 GTF2A1P52655 376 aaPredicted RBP2.07□□□□□ -2.08
LIMA1-210ENST00000552045 FAM19A2Q8N3H0 131 aa2.07□□□□□ -2.08
LIMA1-210ENST00000552045 ODF3Q96PU9 254 aa2.07□□□□□ -2.08
LIMA1-210ENST00000552045 NABP2Q9BQ15 211 aa2.07□□□□□ -2.08
LIMA1-210ENST00000552045 HIGD1AQ9Y241 93 aa2.07□□□□□ -2.08
LIMA1-210ENST00000552045 HELZP42694 1942 aaKnown RBP2.07□□□□□ -2.08
LIMA1-210ENST00000552045 LOC107986453A0A1B0GWG9 222 aa2.06□□□□□ -2.08
LIMA1-210ENST00000552045 HBDP02042 147 aa2.06□□□□□ -2.08
LIMA1-210ENST00000552045 DBIP07108 87 aaKnown RBP2.06□□□□□ -2.08
LIMA1-210ENST00000552045 ZCCHC23Q6ZST2 131 aa2.06□□□□□ -2.08
LIMA1-210ENST00000552045 TCTE3Q8IZS6 198 aa2.06□□□□□ -2.08
LIMA1-210ENST00000552045 GSKIPQ9P0R6 139 aa2.06□□□□□ -2.08
LIMA1-210ENST00000552045 TENM3Q9P273 2699 aa2.06□□□□□ -2.08
LIMA1-210ENST00000552045 MUC19Q7Z5P9 8384 aa2.06□□□□□ -2.08
LIMA1-210ENST00000552045 SVEP1Q4LDE5 3571 aa2.06□□□□□ -2.08
LIMA1-210ENST00000552045 ZGRF1Q86YA3 2104 aa2.05□□□□□ -2.08
LIMA1-210ENST00000552045 UNC13CQ8NB66 2214 aa2.05□□□□□ -2.08
LIMA1-210ENST00000552045 A0A1B0GW64 132 aa2.05□□□□□ -2.08
LIMA1-210ENST00000552045 UQCRQO14949 82 aa2.05□□□□□ -2.08
LIMA1-210ENST00000552045 KLF7O75840 302 aaPredicted RBP2.05□□□□□ -2.08
LIMA1-210ENST00000552045 PAEPP09466 180 aa2.05□□□□□ -2.08
LIMA1-210ENST00000552045 HAGHLQ6PII5 290 aaPredicted RBP2.05□□□□□ -2.08
LIMA1-210ENST00000552045 GLIPR1L1Q6UWM5 242 aa2.05□□□□□ -2.08
LIMA1-210ENST00000552045 ZANQ9Y493 2812 aa2.05□□□□□ -2.08
LIMA1-210ENST00000552045 TRRAPQ9Y4A5 3859 aa2.05□□□□□ -2.08
LIMA1-210ENST00000552045 MYO18AQ92614 2054 aaKnown RBP2.05□□□□□ -2.08
LIMA1-210ENST00000552045 C3orf85A0A1B0GTC6 90 aa2.04□□□□□ -2.08
LIMA1-210ENST00000552045 OR2H2O95918 312 aa2.04□□□□□ -2.08
LIMA1-210ENST00000552045 MT-ND4LP03901 98 aa2.04□□□□□ -2.08
LIMA1-210ENST00000552045 SLC25A4P12235 298 aa2.04□□□□□ -2.08
LIMA1-210ENST00000552045 CCL4P13236 92 aa2.04□□□□□ -2.08
LIMA1-210ENST00000552045 LSM3P62310 102 aaKnown RBP2.04□□□□□ -2.08
LIMA1-210ENST00000552045 BLCAPP62952 87 aa2.04□□□□□ -2.08
LIMA1-210ENST00000552045 PSPHP78330 225 aa2.04□□□□□ -2.08
LIMA1-210ENST00000552045 CASC2Q6XLA1 102 aa2.04□□□□□ -2.08
LIMA1-210ENST00000552045 KNL1Q8NG31 2342 aa2.04□□□□□ -2.08
LIMA1-210ENST00000552045 DLG5Q8TDM6 1919 aa2.04□□□□□ -2.08
LIMA1-210ENST00000552045 IGLV3-32A0A0A0MS00 114 aa2.03□□□□□ -2.08
LIMA1-210ENST00000552045 IGHV3-33P01772 117 aa2.03□□□□□ -2.08
LIMA1-210ENST00000552045 TCRAP04437 139 aa2.03□□□□□ -2.08
LIMA1-210ENST00000552045 SLC25A5P05141 298 aaKnown RBP2.03□□□□□ -2.08
LIMA1-210ENST00000552045 MORN2Q502X0 79 aa2.03□□□□□ -2.08
LIMA1-210ENST00000552045 MAFIPQ8WZ33 124 aa2.03□□□□□ -2.08
LIMA1-210ENST00000552045 TNFSF18Q9UNG2 199 aa2.03□□□□□ -2.08
LIMA1-210ENST00000552045 PDCD11Q14690 1871 aaKnown RBP2.03□□□□□ -2.09
LIMA1-210ENST00000552045 PPYP01298 95 aa2.02□□□□□ -2.09
LIMA1-210ENST00000552045 HSD17B12Q53GQ0 312 aa2.02□□□□□ -2.09
LIMA1-210ENST00000552045 TMEM244Q5VVB8 128 aa2.02□□□□□ -2.09
LIMA1-210ENST00000552045 LZICQ8WZA0 190 aa2.02□□□□□ -2.09
LIMA1-210ENST00000552045 CIB3Q96Q77 187 aaPredicted RBP2.02□□□□□ -2.09
LIMA1-210ENST00000552045 CALML5Q9NZT1 146 aa2.02□□□□□ -2.09
LIMA1-210ENST00000552045 U3KQA8 63 aa2.02□□□□□ -2.09
LIMA1-210ENST00000552045 HERC1Q15751 4861 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms