RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 COL6A3P12111 3177 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 C5orf42Q9H799 3197 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 UNC13CQ8NB66 2214 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 TGIF2-C20orf24A0A0A6YYL0 155 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 A0A1B0GUT8 65 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 A0A1B0GV50 99 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 LOC105371267A0A1B0GV96 52 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 C2orf70A6NJV1 201 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 LINC00587B1AMM8 73 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 C9JCJ5 164 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 TMEM262E9PQX1 116 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 H3BQ15 152 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 H3BRN7 92 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 K7EP13 123 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 TCRAP04437 139 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 CXCL1P09341 107 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 IGHV3-30-3P0DP02 117 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 MIFP14174 115 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 FABP4P15090 132 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 SRIP30626 198 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 CKS2P33552 79 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 RNASE4P34096 147 aaKnown RBP0.99□□□□□ -2.25
LIMA1-209ENST00000552008 FUSP35637 526 aaKnown RBP eCLIP0.99□□□□□ -2.25
LIMA1-209ENST00000552008 RPL35P42766 123 aaKnown RBP0.99□□□□□ -2.25
LIMA1-209ENST00000552008 TCL1AP56279 114 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 TSPEAR-AS2P59090 65 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 DEFB131AP59861 70 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 KRTAP12-3P60328 96 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 HERVK_113P63121 156 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 SEC11AP67812 179 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 FABP9Q0Z7S8 132 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 DIAPH2-AS1Q14236 149 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 KLK9Q2XQG4 91 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 DEFB114Q30KQ6 69 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 LGALS9BQ3B8N2 356 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 FAM229BQ4G0N7 80 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 C10orf55Q5SWW7 151 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 ZNF705AQ6ZN79 300 aaPredicted RBP0.99□□□□□ -2.25
LIMA1-209ENST00000552008 Q6ZRU5 148 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 GOLT1AQ6ZVE7 132 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 MIR17HGQ75NE6 70 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 BAGE3Q86Y29 109 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 RPP25LQ8N5L8 163 aaKnown RBP0.99□□□□□ -2.25
LIMA1-209ENST00000552008 WFDC9Q8NEX5 89 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 MYOZ3Q8TDC0 251 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 SFRP2Q96HF1 295 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 DNAJC30Q96LL9 226 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 HSPB9Q9BQS6 159 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 C2orf88Q9BSF0 95 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 NIT2Q9NQR4 276 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 OSTCQ9NRP0 149 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 KLK9Q9UKQ9 250 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 TP53TG1Q9Y2A0 90 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 LAMTOR2Q9Y2Q5 125 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 TIMM8BQ9Y5J9 83 aaPredicted RBP0.99□□□□□ -2.25
LIMA1-209ENST00000552008 DSCAML1Q8TD84 2053 aa0.99□□□□□ -2.25
LIMA1-209ENST00000552008 GVINP1Q7Z2Y8 2422 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 ATG2BQ96BY7 2078 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 PRUNE2Q8WUY3 3088 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 CACNA1HO95180 2353 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 ATG2AQ2TAZ0 1938 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 CEP192Q8TEP8 1941 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 A0A087WX48 190 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 A0A096LNT2 108 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 TRAV12-3A0A0B4J271 114 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 A0A1B0GVG6 124 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 C7orf77A4D0Y5 90 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 C7orf71A4D174 169 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 KNCNA6PVL3 124 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 H3BPC8 53 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 M0R2P5 195 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 CCL25O15444 150 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 IGLV1-51P01701 117 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 TYMSP04818 313 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 ATP5G1P05496 136 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 IGLC2P0DOY2 106 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 GZMBP10144 247 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 HLA-DRB4P13762 266 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 DDTP30046 118 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 ATP5G3P48201 142 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 CCL18P55774 89 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 KRTDAPP60985 99 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 HBBP68871 147 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 IFITM2Q01629 132 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 PRB3Q04118 309 aaPredicted RBP0.98□□□□□ -2.25
LIMA1-209ENST00000552008 CIRBPQ14011 172 aaKnown RBP0.98□□□□□ -2.25
LIMA1-209ENST00000552008 C4orf26Q17RF5 130 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 KRTAP21-3Q3LHN1 58 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 TDRG1Q3Y452 100 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 SFTA2Q6UW10 78 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 ATOH7Q8N100 152 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 DYNAPQ8N1N2 210 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 EXOC3-AS1Q8N2X6 119 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 OR5A1Q8NGJ0 315 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 TSKUQ8WUA8 353 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 PTH2Q96A98 100 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 SMR3AQ99954 134 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 C20orf78Q9BR46 151 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 VPS25Q9BRG1 176 aa0.98□□□□□ -2.25
LIMA1-209ENST00000552008 VAMP8Q9BV40 100 aa0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms