RNA–Protein interactions for RNA: ENST00000549162.5

SCAF11-212, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-212ENST00000549162 C11orf45Q8TAV5 145 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 SELENOKQ9Y6D0 94 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 IGHV1-24A0A0C4DH33 117 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 LINC00614P0C842 121 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 GNG5P63218 68 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 TIMM8BQ9Y5J9 83 aaPredicted RBP3.32□□□□□ -1.88
SCAF11-212ENST00000549162 COX11Q9Y6N1 276 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 TRBV7-3A0A075B6L6 115 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 TRBV10-2A0A0K0K1G8 114 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 NUPR2A6NF83 97 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 HBDP02042 147 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 ARMS2P0C7Q2 107 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 SPINK9Q5DT21 86 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 PRO0255Q9UI72 69 aa3.32□□□□□ -1.88
SCAF11-212ENST00000549162 TGIF2-C20orf24A0A0A6YYL0 155 aa3.31□□□□□ -1.88
SCAF11-212ENST00000549162 TRAV10A0A0B4J240 114 aa3.31□□□□□ -1.88
SCAF11-212ENST00000549162 IGHV3-64DA0A0J9YX35 117 aa3.31□□□□□ -1.88
SCAF11-212ENST00000549162 C10orf25Q5T742 122 aa3.31□□□□□ -1.88
SCAF11-212ENST00000549162 LITAFQ99732 161 aa3.31□□□□□ -1.88
SCAF11-212ENST00000549162 MAP1LC3AQ9H492 121 aa3.31□□□□□ -1.88
SCAF11-212ENST00000549162 ZNF625Q96I27 306 aaPredicted RBP3.31□□□□□ -1.88
SCAF11-212ENST00000549162 ACACBO00763 2458 aa3.31□□□□□ -1.88
SCAF11-212ENST00000549162 TMEM223A0PJW6 202 aa3.31□□□□□ -1.88
SCAF11-212ENST00000549162 BORCS7Q96B45 105 aa3.31□□□□□ -1.88
SCAF11-212ENST00000549162 CDC42SE2Q9NRR3 84 aa3.31□□□□□ -1.88
SCAF11-212ENST00000549162 APOBP04114 4563 aaKnown RBP3.31□□□□□ -1.88
SCAF11-212ENST00000549162 SPTBN4Q9H254 2564 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 ZNF705GA8MUZ8 300 aaPredicted RBP3.3□□□□□ -1.88
SCAF11-212ENST00000549162 BTN1A1Q13410 526 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 C12orf74Q32Q52 190 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 Q8IZM0 81 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 MUC17Q685J3 4493 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 NDUFA1O15239 70 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 IFITM1P13164 125 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 LY6EQ16553 131 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 RNASE7Q9H1E1 156 aaKnown RBP3.3□□□□□ -1.88
SCAF11-212ENST00000549162 CELA1Q9UNI1 258 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 TRBV30A0A0K0K1B3 111 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 IGHV3-23P01764 117 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 NTF3P20783 257 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 RPL37AP61513 92 aaKnown RBP3.3□□□□□ -1.88
SCAF11-212ENST00000549162 ZFAND6Q6FIF0 208 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 SDIM1Q6ZPB5 146 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 TRAPPC1Q9Y5R8 145 aa3.3□□□□□ -1.88
SCAF11-212ENST00000549162 FASNP49327 2511 aaKnown RBP3.3□□□□□ -1.88
SCAF11-212ENST00000549162 LINC00587B1AMM8 73 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 M0R2N4 97 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 M0R3E3 92 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 LEPROTO15243 131 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 ZZEF1O43149 2961 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 PCNPQ8WW12 178 aaKnown RBP3.29□□□□□ -1.88
SCAF11-212ENST00000549162 TMEM208Q9BTX3 173 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 SPART-AS1P0CW21 52 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 ZNF22P17026 224 aaPredicted RBP3.29□□□□□ -1.88
SCAF11-212ENST00000549162 SPRR1AP35321 89 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 DEFB121Q5J5C9 76 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 NTM-AS1Q6ZSK4 140 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 TRBV6-8A0A0A6YYG3 113 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 A0A1B0GVY2 172 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 PRSS2P07478 247 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 C12orf54Q6X4T0 127 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 DYNLRB2Q8TF09 96 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 ANKHD1Q8IWZ3 2542 aaKnown RBP3.29□□□□□ -1.88
SCAF11-212ENST00000549162 LRP1BQ9NZR2 4599 aa3.29□□□□□ -1.88
SCAF11-212ENST00000549162 IGLV4-3A0A075B6K6 122 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 F8VRH5 84 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 SYS1-DBNDD2H3BUS1 97 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 IGHV3-11P01762 117 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 DEFB131AP59861 70 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 KIAA0087Q14695 138 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 Q9UF83 564 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 CEP250Q9BV73 2442 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 UTP20O75691 2785 aaKnown RBP3.28□□□□□ -1.88
SCAF11-212ENST00000549162 IGHV3OR16-9A0A0B4J2B5 98 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 CD24P25063 80 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 RPS29P62273 56 aaKnown RBP3.28□□□□□ -1.88
SCAF11-212ENST00000549162 MRPL54Q6P161 138 aaKnown RBP3.28□□□□□ -1.88
SCAF11-212ENST00000549162 C10orf126Q8N4M7 172 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 RNF182Q8N6D2 247 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 PRELID3AQ96N28 172 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 CST9LQ9H4G1 147 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 RELNP78509 3460 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 A0A096LPF7 62 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 COX8AP10176 69 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 FAM19A1Q7Z5A9 133 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 MTURNQ8N3F0 131 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 IFI27L1Q96BM0 104 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 OBSCN-AS1Q96MR7 158 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 LOC400499M0QZD8 3231 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 MAST4O15021 2626 aa3.28□□□□□ -1.88
SCAF11-212ENST00000549162 IGHV3-64A0A075B6Q5 118 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 LEPROTL1O95214 131 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 NPYP01303 97 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 IGKV3-20P01619 116 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 IGHV3-7P01780 117 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 PMVKQ15126 192 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 ADIRFQ15847 76 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 RPS10P5Q9NQ39 176 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 PTPRZ1P23471 2315 aaPredicted RBP3.27□□□□□ -1.89
SCAF11-212ENST00000549162 A0A0B4J2C4 111 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms