RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 CCDC179H3BU77 68 aa10.89□□□□□ -0.67
HOXC11-202ENST00000546378 ID1P41134 155 aa10.89□□□□□ -0.67
HOXC11-202ENST00000546378 SMIM20Q8N5G0 67 aa10.89□□□□□ -0.67
HOXC11-202ENST00000546378 C15orf53Q8NAA6 179 aa10.89□□□□□ -0.67
HOXC11-202ENST00000546378 TRAV12-1A0A0B4J245 112 aa10.89□□□□□ -0.67
HOXC11-202ENST00000546378 ITPR3Q14573 2671 aa10.88□□□□□ -0.67
HOXC11-202ENST00000546378 TRAV8-4A0A0B4J246 113 aa10.88□□□□□ -0.67
HOXC11-202ENST00000546378 EIF4EBP3O60516 100 aaPredicted RBP10.88□□□□□ -0.67
HOXC11-202ENST00000546378 FLNAP21333 2647 aaKnown RBP10.88□□□□□ -0.67
HOXC11-202ENST00000546378 MEIG1Q5JSS6 88 aa10.88□□□□□ -0.67
HOXC11-202ENST00000546378 C18orf65Q6ZTR6 163 aa10.88□□□□□ -0.67
HOXC11-202ENST00000546378 NDUFA12Q9UI09 145 aa10.88□□□□□ -0.67
HOXC11-202ENST00000546378 TRIAP1O43715 76 aa10.87□□□□□ -0.67
HOXC11-202ENST00000546378 RNASE1P07998 156 aaKnown RBP10.87□□□□□ -0.67
HOXC11-202ENST00000546378 MSMBP08118 114 aa10.87□□□□□ -0.67
HOXC11-202ENST00000546378 SNRPD3P62318 126 aaKnown RBP10.87□□□□□ -0.67
HOXC11-202ENST00000546378 ADAMTSL4-AS1Q5T5F5 129 aa10.87□□□□□ -0.67
HOXC11-202ENST00000546378 XCL2Q9UBD3 114 aa10.87□□□□□ -0.67
HOXC11-202ENST00000546378 IGHV1-69DA0A0B4J2H0 117 aa10.87□□□□□ -0.67
HOXC11-202ENST00000546378 AVPP01185 164 aa10.87□□□□□ -0.67
HOXC11-202ENST00000546378 IGHV1-69P01742 117 aa10.87□□□□□ -0.67
HOXC11-202ENST00000546378 J3QKU1 62 aa10.86□□□□□ -0.67
HOXC11-202ENST00000546378 IGHV3-30-3P0DP02 117 aa10.86□□□□□ -0.67
HOXC11-202ENST00000546378 UBE2D1P51668 147 aa10.86□□□□□ -0.67
HOXC11-202ENST00000546378 ZNF48Q96MX3 618 aaPredicted RBP10.86□□□□□ -0.67
HOXC11-202ENST00000546378 PSMG3-AS1Q96PY0 264 aa10.86□□□□□ -0.67
HOXC11-202ENST00000546378 LINC01587Q99440 93 aa10.86□□□□□ -0.67
HOXC11-202ENST00000546378 IGIPA6NJ69 53 aa10.86□□□□□ -0.67
HOXC11-202ENST00000546378 M0R2P5 195 aa10.85□□□□□ -0.67
HOXC11-202ENST00000546378 ZNF22P17026 224 aaPredicted RBP10.85□□□□□ -0.67
HOXC11-202ENST00000546378 SLC25A29Q8N8R3 303 aa10.85□□□□□ -0.67
HOXC11-202ENST00000546378 CHCHD5Q9BSY4 110 aa10.85□□□□□ -0.67
HOXC11-202ENST00000546378 NDUFA4O00483 81 aa10.85□□□□□ -0.67
HOXC11-202ENST00000546378 RPL13AP40429 203 aaKnown RBP10.85□□□□□ -0.67
HOXC11-202ENST00000546378 B4DSR2 109 aa10.84□□□□□ -0.67
HOXC11-202ENST00000546378 RHODO00212 210 aa10.84□□□□□ -0.67
HOXC11-202ENST00000546378 IGHV3-33P01772 117 aa10.84□□□□□ -0.67
HOXC11-202ENST00000546378 SLURP1P55000 103 aa10.84□□□□□ -0.67
HOXC11-202ENST00000546378 LINC01620Q4KN68 170 aa10.84□□□□□ -0.67
HOXC11-202ENST00000546378 UNC79Q9P2D8 2635 aa10.83□□□□□ -0.68
HOXC11-202ENST00000546378 Q96MF0 132 aa10.83□□□□□ -0.68
HOXC11-202ENST00000546378 IGHV1OR15-1A0A075B7D0 117 aa10.83□□□□□ -0.68
HOXC11-202ENST00000546378 A0A0J9YXY3 114 aa10.83□□□□□ -0.68
HOXC11-202ENST00000546378 TMEM190Q8WZ59 177 aa10.83□□□□□ -0.68
HOXC11-202ENST00000546378 OOSP1A8MZH6 123 aa10.82□□□□□ -0.68
HOXC11-202ENST00000546378 COX8CQ7Z4L0 72 aa10.82□□□□□ -0.68
HOXC11-202ENST00000546378 PIFOQ8TCI5 191 aa10.82□□□□□ -0.68
HOXC11-202ENST00000546378 POLR2KP53803 58 aaKnown RBP10.82□□□□□ -0.68
HOXC11-202ENST00000546378 EBI3Q14213 229 aa10.82□□□□□ -0.68
HOXC11-202ENST00000546378 IGLV4-3A0A075B6K6 122 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 TMEM262E9PQX1 116 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 H3BMM0 161 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 M0QY20 66 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 LINC00315P59091 139 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 Q6ZSN1 163 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 UBE2WQ96B02 151 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 FAM223BA6NKX1 122 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 PLA2G2AP14555 144 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 UBE2D3P61077 147 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 UBE2D2P62837 147 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 ATXN8Q156A1 80 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 FAM223AQ8IWN6 122 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 Q9HAA7 133 aa10.81□□□□□ -0.68
HOXC11-202ENST00000546378 I3L3M4 83 aa10.8□□□□□ -0.68
HOXC11-202ENST00000546378 NXPH4O95158 308 aa10.8□□□□□ -0.68
HOXC11-202ENST00000546378 COX6CP09669 75 aa10.8□□□□□ -0.68
HOXC11-202ENST00000546378 DEFB112Q30KQ8 113 aa10.8□□□□□ -0.68
HOXC11-202ENST00000546378 CDKN2A-AS1Q9UH64 79 aa10.8□□□□□ -0.68
HOXC11-202ENST00000546378 F8P00451 2351 aa10.8□□□□□ -0.68
HOXC11-202ENST00000546378 DEFB113Q30KQ7 82 aa10.8□□□□□ -0.68
HOXC11-202ENST00000546378 TCTEX1D4Q5JR98 221 aa10.8□□□□□ -0.68
HOXC11-202ENST00000546378 IGHV4OR15-8A0A075B7B6 117 aa10.79□□□□□ -0.68
HOXC11-202ENST00000546378 NBPF19A0A087WUL8 3843 aa10.79□□□□□ -0.68
HOXC11-202ENST00000546378 A0A087WW49 117 aa10.79□□□□□ -0.68
HOXC11-202ENST00000546378 PPP1R17O96001 155 aa10.79□□□□□ -0.68
HOXC11-202ENST00000546378 PAPPA-AS1Q5QFB9 102 aa10.79□□□□□ -0.68
HOXC11-202ENST00000546378 C20orf203Q8NBC4 194 aa10.79□□□□□ -0.68
HOXC11-202ENST00000546378 TRGV1A0A0A0MS02 117 aa10.79□□□□□ -0.68
HOXC11-202ENST00000546378 POM121L12Q8N7R1 296 aa10.79□□□□□ -0.68
HOXC11-202ENST00000546378 SRSF2Q01130 221 aaKnown RBP10.78□□□□□ -0.68
HOXC11-202ENST00000546378 Q9H8V8 135 aa10.78□□□□□ -0.68
HOXC11-202ENST00000546378 SETXQ7Z333 2677 aaKnown RBP10.78□□□□□ -0.68
HOXC11-202ENST00000546378 TMEM141Q96I45 108 aa10.78□□□□□ -0.68
HOXC11-202ENST00000546378 U3KQE9 123 aa10.78□□□□□ -0.68
HOXC11-202ENST00000546378 WFDC11Q8NEX6 87 aa10.78□□□□□ -0.68
HOXC11-202ENST00000546378 ICOSQ9Y6W8 199 aa10.78□□□□□ -0.68
HOXC11-202ENST00000546378 TMEM223A0PJW6 202 aa10.77□□□□□ -0.68
HOXC11-202ENST00000546378 MRPL23Q16540 153 aaKnown RBP10.77□□□□□ -0.68
HOXC11-202ENST00000546378 PIK3CD-AS1Q5SR53 167 aa10.77□□□□□ -0.68
HOXC11-202ENST00000546378 LINC01356Q8N9X3 169 aa10.77□□□□□ -0.68
HOXC11-202ENST00000546378 LINC00467Q9BRT7 94 aa10.77□□□□□ -0.68
HOXC11-202ENST00000546378 KIF25-AS1Q9Y6Z4 181 aa10.77□□□□□ -0.68
HOXC11-202ENST00000546378 IGHV4-4A0A075B6R2 117 aa10.77□□□□□ -0.69
HOXC11-202ENST00000546378 IFITM1P13164 125 aa10.77□□□□□ -0.69
HOXC11-202ENST00000546378 DYNLRB2Q8TF09 96 aa10.77□□□□□ -0.69
HOXC11-202ENST00000546378 GAGE12JA6NER3 117 aa10.76□□□□□ -0.69
HOXC11-202ENST00000546378 SOCS3O14543 225 aa10.76□□□□□ -0.69
HOXC11-202ENST00000546378 GAGE4Q13068 117 aa10.76□□□□□ -0.69
HOXC11-202ENST00000546378 GAGE5Q13069 117 aa10.76□□□□□ -0.69
HOXC11-202ENST00000546378 OR13C6PQ8NH95 151 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms