RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 SMIM15Q7Z3B0 74 aa8.5□□□□□ -1.05
RTN3-212ENST00000543123 C9orf163Q8N9P6 203 aa8.5□□□□□ -1.05
RTN3-212ENST00000543123 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.49□□□□□ -1.05
RTN3-212ENST00000543123 AMTP48728 403 aa8.49□□□□□ -1.05
RTN3-212ENST00000543123 SMCPP49901 116 aaPredicted RBP8.49□□□□□ -1.05
RTN3-212ENST00000543123 TWIST1Q15672 202 aa8.49□□□□□ -1.05
RTN3-212ENST00000543123 RPP21Q9H633 154 aaKnown RBP8.49□□□□□ -1.05
RTN3-212ENST00000543123 AP5S1Q9NUS5 200 aa8.49□□□□□ -1.05
RTN3-212ENST00000543123 IGLV10-54A0A075B6I4 117 aa8.48□□□□□ -1.05
RTN3-212ENST00000543123 hDV102S1A0JD36 115 aa8.48□□□□□ -1.05
RTN3-212ENST00000543123 RPL37AP61513 92 aaKnown RBP8.48□□□□□ -1.05
RTN3-212ENST00000543123 CNBPP62633 177 aaKnown RBP8.48□□□□□ -1.05
RTN3-212ENST00000543123 KRTAP26-1Q6PEX3 210 aa8.48□□□□□ -1.05
RTN3-212ENST00000543123 C20orf203Q8NBC4 194 aa8.48□□□□□ -1.05
RTN3-212ENST00000543123 NUDT10Q8NFP7 164 aa8.48□□□□□ -1.05
RTN3-212ENST00000543123 NUDT11Q96G61 164 aa8.48□□□□□ -1.05
RTN3-212ENST00000543123 CNFNQ9BYD5 112 aa8.48□□□□□ -1.05
RTN3-212ENST00000543123 OXTP01178 125 aa8.47□□□□□ -1.05
RTN3-212ENST00000543123 TEX261Q6UWH6 196 aa8.47□□□□□ -1.05
RTN3-212ENST00000543123 KRTAP10-4P60372 401 aaPredicted RBP8.46□□□□□ -1.06
RTN3-212ENST00000543123 IGLV4-60A0A075B6I1 120 aa8.45□□□□□ -1.06
RTN3-212ENST00000543123 IGHV3-64A0A075B6Q5 118 aa8.45□□□□□ -1.06
RTN3-212ENST00000543123 TMEM250H0YL14 139 aa8.45□□□□□ -1.06
RTN3-212ENST00000543123 NCR2O95944 276 aa8.45□□□□□ -1.06
RTN3-212ENST00000543123 AMMECR1LQ6DCA0 310 aa8.45□□□□□ -1.06
RTN3-212ENST00000543123 CFAP161Q6P656 301 aa8.45□□□□□ -1.06
RTN3-212ENST00000543123 RNASE7Q9H1E1 156 aaKnown RBP8.45□□□□□ -1.06
RTN3-212ENST00000543123 BLOC1S1P78537 153 aa8.44□□□□□ -1.06
RTN3-212ENST00000543123 SERTAD4-AS1Q5TG53 156 aa8.44□□□□□ -1.06
RTN3-212ENST00000543123 SDIM1Q6ZPB5 146 aa8.44□□□□□ -1.06
RTN3-212ENST00000543123 GATD1Q8NB37 220 aa8.44□□□□□ -1.06
RTN3-212ENST00000543123 OCC1Q8TAD7 63 aa8.44□□□□□ -1.06
RTN3-212ENST00000543123 BORCS7Q96B45 105 aa8.44□□□□□ -1.06
RTN3-212ENST00000543123 RNF185Q96GF1 192 aa8.44□□□□□ -1.06
RTN3-212ENST00000543123 LRP1Q07954 4544 aaKnown RBP8.43□□□□□ -1.06
RTN3-212ENST00000543123 A8MWL6 223 aa8.43□□□□□ -1.06
RTN3-212ENST00000543123 H7C423 109 aa8.43□□□□□ -1.06
RTN3-212ENST00000543123 K7EN84 100 aa8.43□□□□□ -1.06
RTN3-212ENST00000543123 APCSP02743 223 aa8.43□□□□□ -1.06
RTN3-212ENST00000543123 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.43□□□□□ -1.06
RTN3-212ENST00000543123 TRAV26-2A0A0B4J265 109 aa8.42□□□□□ -1.06
RTN3-212ENST00000543123 GATCO43716 136 aaKnown RBP8.42□□□□□ -1.06
RTN3-212ENST00000543123 FAM231DQ6ZW35 169 aa8.42□□□□□ -1.06
RTN3-212ENST00000543123 DPH3Q96FX2 82 aa8.42□□□□□ -1.06
RTN3-212ENST00000543123 FAM210AQ96ND0 272 aa8.42□□□□□ -1.06
RTN3-212ENST00000543123 GFRA4Q9GZZ7 299 aa8.42□□□□□ -1.06
RTN3-212ENST00000543123 FAT3Q8TDW7 4589 aa8.42□□□□□ -1.06
RTN3-212ENST00000543123 ZNF25P17030 456 aaPredicted RBP8.41□□□□□ -1.06
RTN3-212ENST00000543123 CIRBPQ14011 172 aaKnown RBP8.41□□□□□ -1.06
RTN3-212ENST00000543123 CT83Q5H943 113 aa8.41□□□□□ -1.06
RTN3-212ENST00000543123 RNASEKQ6P5S7 137 aaKnown RBP8.41□□□□□ -1.06
RTN3-212ENST00000543123 GTSF1Q8WW33 167 aa8.41□□□□□ -1.06
RTN3-212ENST00000543123 PKHD1L1Q86WI1 4243 aa8.41□□□□□ -1.06
RTN3-212ENST00000543123 IGKV3OR2-268A0A0C4DH90 116 aa8.4□□□□□ -1.06
RTN3-212ENST00000543123 GAGE12HA6NDE8 117 aa8.4□□□□□ -1.06
RTN3-212ENST00000543123 SDHAF1A6NFY7 115 aa8.4□□□□□ -1.06
RTN3-212ENST00000543123 RPL39LQ96EH5 51 aaKnown RBP8.4□□□□□ -1.06
RTN3-212ENST00000543123 BTF3L4Q96K17 158 aa8.4□□□□□ -1.06
RTN3-212ENST00000543123 I3L3M4 83 aa8.39□□□□□ -1.07
RTN3-212ENST00000543123 FGF6P10767 208 aa8.39□□□□□ -1.07
RTN3-212ENST00000543123 PMCHP20382 165 aa8.39□□□□□ -1.07
RTN3-212ENST00000543123 CEBPGP53567 150 aa8.39□□□□□ -1.07
RTN3-212ENST00000543123 ALKAL2Q6UX46 152 aa8.39□□□□□ -1.07
RTN3-212ENST00000543123 TMEM101Q96IK0 257 aa8.39□□□□□ -1.07
RTN3-212ENST00000543123 PKIGQ9Y2B9 76 aa8.39□□□□□ -1.07
RTN3-212ENST00000543123 TRBV6-5A0A0K0K1A5 114 aa8.38□□□□□ -1.07
RTN3-212ENST00000543123 PANO1I0J062 215 aa8.38□□□□□ -1.07
RTN3-212ENST00000543123 NDUFS6O75380 124 aaKnown RBP8.38□□□□□ -1.07
RTN3-212ENST00000543123 RPS10P46783 165 aaKnown RBP8.38□□□□□ -1.07
RTN3-212ENST00000543123 C15orf56Q8N910 161 aa8.38□□□□□ -1.07
RTN3-212ENST00000543123 SPACA4Q8TDM5 124 aa8.38□□□□□ -1.07
RTN3-212ENST00000543123 CHCHD10Q8WYQ3 142 aaPredicted RBP8.38□□□□□ -1.07
RTN3-212ENST00000543123 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.37□□□□□ -1.07
RTN3-212ENST00000543123 IGKV2-29A2NJV5 120 aaPredicted RBP8.37□□□□□ -1.07
RTN3-212ENST00000543123 FOXA3P55318 350 aaPredicted RBP8.37□□□□□ -1.07
RTN3-212ENST00000543123 LYPD6BQ8NI32 183 aa8.37□□□□□ -1.07
RTN3-212ENST00000543123 C7orf33Q8WU49 177 aa8.37□□□□□ -1.07
RTN3-212ENST00000543123 MRAP2Q96G30 205 aa8.37□□□□□ -1.07
RTN3-212ENST00000543123 SMIM7Q9BQ49 75 aa8.37□□□□□ -1.07
RTN3-212ENST00000543123 EIF5A2Q9GZV4 153 aaKnown RBP8.37□□□□□ -1.07
RTN3-212ENST00000543123 ST20Q9HBF5 79 aa8.37□□□□□ -1.07
RTN3-212ENST00000543123 HMCN2Q8NDA2 5059 aa8.37□□□□□ -1.07
RTN3-212ENST00000543123 A0A087WYN8 130 aa8.36□□□□□ -1.07
RTN3-212ENST00000543123 GVQW2A0A096LPI5 108 aaPredicted RBP8.36□□□□□ -1.07
RTN3-212ENST00000543123 A0A1B0GUT8 65 aa8.36□□□□□ -1.07
RTN3-212ENST00000543123 FAM231BA6NCW3 169 aa8.36□□□□□ -1.07
RTN3-212ENST00000543123 OR5A1Q8NGJ0 315 aa8.36□□□□□ -1.07
RTN3-212ENST00000543123 TSKUQ8WUA8 353 aa8.36□□□□□ -1.07
RTN3-212ENST00000543123 HIGD1CA8MV81 97 aa8.35□□□□□ -1.07
RTN3-212ENST00000543123 SLPIP03973 132 aa8.35□□□□□ -1.07
RTN3-212ENST00000543123 SMAGPQ0VAQ4 97 aa8.35□□□□□ -1.07
RTN3-212ENST00000543123 HIGD2BQ4VC39 106 aa8.35□□□□□ -1.07
RTN3-212ENST00000543123 Q6ZRU5 148 aa8.35□□□□□ -1.07
RTN3-212ENST00000543123 LINC01551Q86U37 167 aa8.35□□□□□ -1.07
RTN3-212ENST00000543123 TMEM191AQ9H0A3 160 aa8.35□□□□□ -1.07
RTN3-212ENST00000543123 PLAC8Q9NZF1 115 aa8.35□□□□□ -1.07
RTN3-212ENST00000543123 ZNF727A8MUV8 499 aa8.34□□□□□ -1.07
RTN3-212ENST00000543123 PPP1R17O96001 155 aa8.34□□□□□ -1.07
RTN3-212ENST00000543123 CHTF8P0CG12 524 aa8.34□□□□□ -1.07
RTN3-212ENST00000543123 XCL1P47992 114 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms