RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 CYSLTR1Q9Y271 337 aa12.44□□□□□ -0.42
CLIP1-215ENST00000541108 LOC100131303A0A0U1RQF7 123 aa12.43□□□□□ -0.42
CLIP1-215ENST00000541108 C3orf79P0CE67 100 aa12.43□□□□□ -0.42
CLIP1-215ENST00000541108 JOSD1Q15040 202 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-215ENST00000541108 PHLDA1Q8WV24 401 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-215ENST00000541108 VSIG2Q96IQ7 327 aa12.43□□□□□ -0.42
CLIP1-215ENST00000541108 GTSF1LQ9H1H1 148 aa12.43□□□□□ -0.42
CLIP1-215ENST00000541108 TENM3Q9P273 2699 aa12.43□□□□□ -0.42
CLIP1-215ENST00000541108 ATP5LO75964 103 aa12.42□□□□□ -0.42
CLIP1-215ENST00000541108 GYPEP15421 78 aa12.42□□□□□ -0.42
CLIP1-215ENST00000541108 KRTDAPP60985 99 aa12.42□□□□□ -0.42
CLIP1-215ENST00000541108 C20orf203Q8NBC4 194 aa12.42□□□□□ -0.42
CLIP1-215ENST00000541108 IGHV3-38A0A0C4DH36 116 aa12.42□□□□□ -0.42
CLIP1-215ENST00000541108 NHLRC4P0CG21 123 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-215ENST00000541108 PYY3Q5JQD4 70 aa12.42□□□□□ -0.42
CLIP1-215ENST00000541108 LINC00173Q6ZV60 143 aa12.42□□□□□ -0.42
CLIP1-215ENST00000541108 SPATA12Q7Z6I5 190 aa12.42□□□□□ -0.42
CLIP1-215ENST00000541108 DEFB104AQ8WTQ1 72 aa12.42□□□□□ -0.42
CLIP1-215ENST00000541108 IFI27L1Q96BM0 104 aa12.42□□□□□ -0.42
CLIP1-215ENST00000541108 TRAV26-1A0A087WT03 109 aa12.41□□□□□ -0.42
CLIP1-215ENST00000541108 H3BNG1 76 aa12.41□□□□□ -0.42
CLIP1-215ENST00000541108 SMIM6P0DI80 62 aa12.41□□□□□ -0.42
CLIP1-215ENST00000541108 TMEM97Q5BJF2 176 aa12.41□□□□□ -0.42
CLIP1-215ENST00000541108 Q6ZTC4 211 aa12.41□□□□□ -0.42
CLIP1-215ENST00000541108 ERASQ7Z444 233 aa12.41□□□□□ -0.42
CLIP1-215ENST00000541108 SYS1-DBNDD2H3BUS1 97 aa12.4□□□□□ -0.42
CLIP1-215ENST00000541108 HTN3P15516 51 aa12.4□□□□□ -0.42
CLIP1-215ENST00000541108 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-215ENST00000541108 DEFA6Q01524 100 aa12.39□□□□□ -0.43
CLIP1-215ENST00000541108 PET117Q6UWS5 81 aa12.39□□□□□ -0.43
CLIP1-215ENST00000541108 ATP6V0E2Q8NHE4 81 aa12.39□□□□□ -0.43
CLIP1-215ENST00000541108 SCGB3A1Q96QR1 104 aa12.39□□□□□ -0.43
CLIP1-215ENST00000541108 CHCHD7Q9BUK0 85 aa12.39□□□□□ -0.43
CLIP1-215ENST00000541108 NANOS2P60321 138 aaKnown RBP12.38□□□□□ -0.43
CLIP1-215ENST00000541108 SH2D6Q7Z4S9 175 aa12.38□□□□□ -0.43
CLIP1-215ENST00000541108 A0A0J9YY99 117 aa12.38□□□□□ -0.43
CLIP1-215ENST00000541108 IGIPA6NJ69 53 aa12.38□□□□□ -0.43
CLIP1-215ENST00000541108 RPL39P62891 51 aaKnown RBP12.38□□□□□ -0.43
CLIP1-215ENST00000541108 MRPL23Q16540 153 aaKnown RBP12.38□□□□□ -0.43
CLIP1-215ENST00000541108 NTM-AS1Q6ZSK4 140 aa12.38□□□□□ -0.43
CLIP1-215ENST00000541108 TIMM17AQ99595 171 aa12.38□□□□□ -0.43
CLIP1-215ENST00000541108 SCGB1D1O95968 90 aa12.37□□□□□ -0.43
CLIP1-215ENST00000541108 TMEM141Q96I45 108 aa12.37□□□□□ -0.43
CLIP1-215ENST00000541108 HUWE1Q7Z6Z7 4374 aaKnown RBP12.37□□□□□ -0.43
CLIP1-215ENST00000541108 PYGO1Q9Y3Y4 419 aa12.36□□□□□ -0.43
CLIP1-215ENST00000541108 NPSP0C0P6 89 aa12.35□□□□□ -0.43
CLIP1-215ENST00000541108 ICOSQ9Y6W8 199 aa12.35□□□□□ -0.43
CLIP1-215ENST00000541108 TRBV25-1A0A075B6N4 114 aa12.35□□□□□ -0.43
CLIP1-215ENST00000541108 DEFB131BA0A096LNP1 70 aa12.35□□□□□ -0.43
CLIP1-215ENST00000541108 TRBV6-8A0A0A6YYG3 113 aa12.35□□□□□ -0.43
CLIP1-215ENST00000541108 C20orf202A1L168 122 aa12.35□□□□□ -0.43
CLIP1-215ENST00000541108 H7C423 109 aa12.35□□□□□ -0.43
CLIP1-215ENST00000541108 PRSS1P07477 247 aa12.35□□□□□ -0.43
CLIP1-215ENST00000541108 Q6ZN92 141 aa12.35□□□□□ -0.43
CLIP1-215ENST00000541108 LINC00518Q8N0U6 118 aa12.35□□□□□ -0.43
CLIP1-215ENST00000541108 Q8N976 141 aa12.35□□□□□ -0.43
CLIP1-215ENST00000541108 SMAGPQ0VAQ4 97 aa12.34□□□□□ -0.43
CLIP1-215ENST00000541108 LINC01545Q5VT33 79 aa12.34□□□□□ -0.43
CLIP1-215ENST00000541108 TRAV10A0A0B4J240 114 aa12.33□□□□□ -0.44
CLIP1-215ENST00000541108 LGALS9CQ6DKI2 356 aa12.33□□□□□ -0.44
CLIP1-215ENST00000541108 TIMM21Q9BVV7 248 aa12.33□□□□□ -0.44
CLIP1-215ENST00000541108 SPANXA1Q9NS26 97 aa12.33□□□□□ -0.44
CLIP1-215ENST00000541108 A0A096LPF7 62 aa12.32□□□□□ -0.44
CLIP1-215ENST00000541108 PAPPA-AS1Q5QFB9 102 aa12.32□□□□□ -0.44
CLIP1-215ENST00000541108 C12orf57Q99622 126 aa12.32□□□□□ -0.44
CLIP1-215ENST00000541108 TMEM243Q9BU79 118 aa12.32□□□□□ -0.44
CLIP1-215ENST00000541108 UBE2D4Q9Y2X8 147 aa12.32□□□□□ -0.44
CLIP1-215ENST00000541108 CSDC2Q9Y534 153 aaKnown RBP12.32□□□□□ -0.44
CLIP1-215ENST00000541108 DNAH9Q9NYC9 4486 aa12.32□□□□□ -0.44
CLIP1-215ENST00000541108 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-215ENST00000541108 TRAV12-1A0A0B4J245 112 aa12.32□□□□□ -0.44
CLIP1-215ENST00000541108 IGKV2-29A2NJV5 120 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-215ENST00000541108 H0Y8G0 127 aa12.32□□□□□ -0.44
CLIP1-215ENST00000541108 MRPL52Q86TS9 123 aaKnown RBP12.31□□□□□ -0.44
CLIP1-215ENST00000541108 BAALCQ8WXS3 180 aa12.31□□□□□ -0.44
CLIP1-215ENST00000541108 UBE2L6O14933 153 aa12.29□□□□□ -0.44
CLIP1-215ENST00000541108 COL7A1Q02388 2944 aa12.29□□□□□ -0.44
CLIP1-215ENST00000541108 A0A087WX48 190 aa12.29□□□□□ -0.44
CLIP1-215ENST00000541108 MRPS36P82909 103 aaKnown RBP12.29□□□□□ -0.44
CLIP1-215ENST00000541108 ODF1Q14990 250 aa12.29□□□□□ -0.44
CLIP1-215ENST00000541108 PMVKQ15126 192 aa12.29□□□□□ -0.44
CLIP1-215ENST00000541108 IGLV4-3A0A075B6K6 122 aa12.28□□□□□ -0.44
CLIP1-215ENST00000541108 FGF6P10767 208 aa12.28□□□□□ -0.44
CLIP1-215ENST00000541108 ZNF25P17030 456 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-215ENST00000541108 TIRAPP58753 221 aa12.28□□□□□ -0.44
CLIP1-215ENST00000541108 DGAT2L7PQ6IED9 249 aa12.28□□□□□ -0.44
CLIP1-215ENST00000541108 TEX43Q6ZNM6 134 aa12.28□□□□□ -0.44
CLIP1-215ENST00000541108 MEGF8Q7Z7M0 2845 aa12.28□□□□□ -0.44
CLIP1-215ENST00000541108 S100A12P80511 92 aa12.27□□□□□ -0.45
CLIP1-215ENST00000541108 FAM104AQ969W3 186 aa12.27□□□□□ -0.45
CLIP1-215ENST00000541108 VCX2Q9H322 139 aa12.27□□□□□ -0.45
CLIP1-215ENST00000541108 PRSS29PA6NIE9 313 aa12.26□□□□□ -0.45
CLIP1-215ENST00000541108 CDPF1Q6NVV7 123 aa12.26□□□□□ -0.45
CLIP1-215ENST00000541108 CEMP1Q6PRD7 247 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-215ENST00000541108 AMELXQ99217 191 aa12.26□□□□□ -0.45
CLIP1-215ENST00000541108 CHCHD5Q9BSY4 110 aa12.26□□□□□ -0.45
CLIP1-215ENST00000541108 CST9LQ9H4G1 147 aa12.26□□□□□ -0.45
CLIP1-215ENST00000541108 F8VRH5 84 aa12.26□□□□□ -0.45
CLIP1-215ENST00000541108 LYPD5Q6UWN5 251 aa12.26□□□□□ -0.45
CLIP1-215ENST00000541108 C15orf53Q8NAA6 179 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms