RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 KRTAP26-1Q6PEX3 210 aa8.98□□□□□ -0.97
SYNE1-235ENST00000537033 C20orf203Q8NBC4 194 aa8.98□□□□□ -0.97
SYNE1-235ENST00000537033 TRBV20OR9-2A0A075B6H5 130 aa8.97□□□□□ -0.97
SYNE1-235ENST00000537033 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-235ENST00000537033 AMTP48728 403 aa8.97□□□□□ -0.97
SYNE1-235ENST00000537033 TWIST1Q15672 202 aa8.97□□□□□ -0.97
SYNE1-235ENST00000537033 IGLV4-60A0A075B6I1 120 aa8.96□□□□□ -0.98
SYNE1-235ENST00000537033 CNBPP62633 177 aaKnown RBP8.96□□□□□ -0.98
SYNE1-235ENST00000537033 SERTAD4-AS1Q5TG53 156 aa8.96□□□□□ -0.98
SYNE1-235ENST00000537033 SMIM15Q7Z3B0 74 aa8.96□□□□□ -0.98
SYNE1-235ENST00000537033 C9orf62Q8N4C0 152 aa8.96□□□□□ -0.98
SYNE1-235ENST00000537033 RPP21Q9H633 154 aaKnown RBP8.96□□□□□ -0.98
SYNE1-235ENST00000537033 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-235ENST00000537033 SLC51BQ86UW2 128 aa8.95□□□□□ -0.98
SYNE1-235ENST00000537033 NUDT10Q8NFP7 164 aa8.95□□□□□ -0.98
SYNE1-235ENST00000537033 NUDT11Q96G61 164 aa8.95□□□□□ -0.98
SYNE1-235ENST00000537033 CNFNQ9BYD5 112 aa8.95□□□□□ -0.98
SYNE1-235ENST00000537033 IGHV3-64A0A075B6Q5 118 aa8.94□□□□□ -0.98
SYNE1-235ENST00000537033 SDIM1Q6ZPB5 146 aa8.94□□□□□ -0.98
SYNE1-235ENST00000537033 DPH3Q96FX2 82 aa8.94□□□□□ -0.98
SYNE1-235ENST00000537033 AMMECR1LQ6DCA0 310 aa8.93□□□□□ -0.98
SYNE1-235ENST00000537033 GFRA4Q9GZZ7 299 aa8.93□□□□□ -0.98
SYNE1-235ENST00000537033 RNASE7Q9H1E1 156 aaKnown RBP8.93□□□□□ -0.98
SYNE1-235ENST00000537033 TRAV26-2A0A0B4J265 109 aa8.92□□□□□ -0.98
SYNE1-235ENST00000537033 IGKV3OR2-268A0A0C4DH90 116 aa8.92□□□□□ -0.98
SYNE1-235ENST00000537033 IFITM2Q01629 132 aa8.92□□□□□ -0.98
SYNE1-235ENST00000537033 CFAP161Q6P656 301 aa8.92□□□□□ -0.98
SYNE1-235ENST00000537033 TEX261Q6UWH6 196 aa8.92□□□□□ -0.98
SYNE1-235ENST00000537033 PANO1I0J062 215 aa8.91□□□□□ -0.98
SYNE1-235ENST00000537033 NCR2O95944 276 aa8.91□□□□□ -0.98
SYNE1-235ENST00000537033 APCSP02743 223 aa8.91□□□□□ -0.98
SYNE1-235ENST00000537033 GATD1Q8NB37 220 aa8.91□□□□□ -0.98
SYNE1-235ENST00000537033 OCC1Q8TAD7 63 aa8.91□□□□□ -0.98
SYNE1-235ENST00000537033 RNF185Q96GF1 192 aa8.91□□□□□ -0.98
SYNE1-235ENST00000537033 GAGE12HA6NDE8 117 aa8.9□□□□□ -0.98
SYNE1-235ENST00000537033 K7EN84 100 aa8.9□□□□□ -0.98
SYNE1-235ENST00000537033 CIRBPQ14011 172 aaKnown RBP8.9□□□□□ -0.98
SYNE1-235ENST00000537033 RNASEKQ6P5S7 137 aaKnown RBP8.9□□□□□ -0.98
SYNE1-235ENST00000537033 H7C423 109 aa8.89□□□□□ -0.99
SYNE1-235ENST00000537033 GATCO43716 136 aaKnown RBP8.89□□□□□ -0.99
SYNE1-235ENST00000537033 GTSF1Q8WW33 167 aa8.89□□□□□ -0.99
SYNE1-235ENST00000537033 BORCS7Q96B45 105 aa8.89□□□□□ -0.99
SYNE1-235ENST00000537033 RPL39LQ96EH5 51 aaKnown RBP8.89□□□□□ -0.99
SYNE1-235ENST00000537033 SDHAF1A6NFY7 115 aa8.88□□□□□ -0.99
SYNE1-235ENST00000537033 A8MWL6 223 aa8.88□□□□□ -0.99
SYNE1-235ENST00000537033 TMEM250H0YL14 139 aa8.88□□□□□ -0.99
SYNE1-235ENST00000537033 CHTF8P0CG12 524 aa8.88□□□□□ -0.99
SYNE1-235ENST00000537033 HNRNPA3P51991 378 aaKnown RBP8.88□□□□□ -0.99
SYNE1-235ENST00000537033 C15orf56Q8N910 161 aa8.88□□□□□ -0.99
SYNE1-235ENST00000537033 SPACA4Q8TDM5 124 aa8.88□□□□□ -0.99
SYNE1-235ENST00000537033 CHCHD10Q8WYQ3 142 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-235ENST00000537033 PLA2G2DQ9UNK4 145 aa8.88□□□□□ -0.99
SYNE1-235ENST00000537033 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-235ENST00000537033 A0A087WYN8 130 aa8.87□□□□□ -0.99
SYNE1-235ENST00000537033 IGKV2-29A2NJV5 120 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-235ENST00000537033 SLPIP03973 132 aa8.87□□□□□ -0.99
SYNE1-235ENST00000537033 ZNF25P17030 456 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-235ENST00000537033 RPS10P46783 165 aaKnown RBP8.87□□□□□ -0.99
SYNE1-235ENST00000537033 CEBPGP53567 150 aa8.87□□□□□ -0.99
SYNE1-235ENST00000537033 BLOC1S1P78537 153 aa8.87□□□□□ -0.99
SYNE1-235ENST00000537033 C7orf33Q8WU49 177 aa8.87□□□□□ -0.99
SYNE1-235ENST00000537033 BTF3L4Q96K17 158 aa8.87□□□□□ -0.99
SYNE1-235ENST00000537033 I3L3M4 83 aa8.86□□□□□ -0.99
SYNE1-235ENST00000537033 FGF6P10767 208 aa8.86□□□□□ -0.99
SYNE1-235ENST00000537033 PMCHP20382 165 aa8.86□□□□□ -0.99
SYNE1-235ENST00000537033 HIGD2BQ4VC39 106 aa8.86□□□□□ -0.99
SYNE1-235ENST00000537033 Q6ZRU5 148 aa8.86□□□□□ -0.99
SYNE1-235ENST00000537033 FAM231DQ6ZW35 169 aa8.86□□□□□ -0.99
SYNE1-235ENST00000537033 TMEM101Q96IK0 257 aa8.86□□□□□ -0.99
SYNE1-235ENST00000537033 FOXA3P55318 350 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-235ENST00000537033 CT83Q5H943 113 aa8.85□□□□□ -0.99
SYNE1-235ENST00000537033 ALKAL2Q6UX46 152 aa8.85□□□□□ -0.99
SYNE1-235ENST00000537033 PKIGQ9Y2B9 76 aa8.85□□□□□ -0.99
SYNE1-235ENST00000537033 LRP1Q07954 4544 aaKnown RBP8.84□□□□□ -0.99
SYNE1-235ENST00000537033 GVQW2A0A096LPI5 108 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-235ENST00000537033 NDUFS6O75380 124 aaKnown RBP8.84□□□□□ -0.99
SYNE1-235ENST00000537033 COX6A2Q02221 97 aa8.84□□□□□ -0.99
SYNE1-235ENST00000537033 OR5A1Q8NGJ0 315 aa8.84□□□□□ -0.99
SYNE1-235ENST00000537033 MRAP2Q96G30 205 aa8.84□□□□□ -0.99
SYNE1-235ENST00000537033 ST20Q9HBF5 79 aa8.84□□□□□ -0.99
SYNE1-235ENST00000537033 PLAC8Q9NZF1 115 aa8.84□□□□□ -0.99
SYNE1-235ENST00000537033 IGKV2-24A0A0C4DH68 120 aa8.83□□□□□ -1
SYNE1-235ENST00000537033 TRBV6-5A0A0K0K1A5 114 aa8.83□□□□□ -1
SYNE1-235ENST00000537033 XCL1P47992 114 aa8.83□□□□□ -1
SYNE1-235ENST00000537033 NDUFA5Q16718 116 aa8.83□□□□□ -1
SYNE1-235ENST00000537033 MAJINQ3KP22 176 aa8.83□□□□□ -1
SYNE1-235ENST00000537033 FAM210AQ96ND0 272 aa8.83□□□□□ -1
SYNE1-235ENST00000537033 A0A1B0GUT8 65 aa8.82□□□□□ -1
SYNE1-235ENST00000537033 FOXI1Q12951 378 aa8.82□□□□□ -1
SYNE1-235ENST00000537033 SMIM7Q9BQ49 75 aa8.82□□□□□ -1
SYNE1-235ENST00000537033 EIF5A2Q9GZV4 153 aaKnown RBP8.82□□□□□ -1
SYNE1-235ENST00000537033 HIGD1CA8MV81 97 aa8.81□□□□□ -1
SYNE1-235ENST00000537033 PHOX2AO14813 284 aa8.81□□□□□ -1
SYNE1-235ENST00000537033 SS18Q15532 418 aa8.81□□□□□ -1
SYNE1-235ENST00000537033 PRSS3P2Q8NHM4 247 aa8.81□□□□□ -1
SYNE1-235ENST00000537033 TSKUQ8WUA8 353 aa8.81□□□□□ -1
SYNE1-235ENST00000537033 TMEM191AQ9H0A3 160 aa8.81□□□□□ -1
SYNE1-235ENST00000537033 TMEM242Q9NWH2 141 aa8.81□□□□□ -1
SYNE1-235ENST00000537033 LINC00474Q9P2X8 69 aa8.81□□□□□ -1
SYNE1-235ENST00000537033 IGHV1-58A0A0C4DH39 117 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms