RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 H7C2G1 150 aa8.44□□□□□ -1.06
SYNE1-234ENST00000536990 MRPS36P82909 103 aaKnown RBP8.44□□□□□ -1.06
SYNE1-234ENST00000536990 PRRC2AP48634 2157 aaKnown RBP8.44□□□□□ -1.06
SYNE1-234ENST00000536990 PROK1P58294 105 aa8.44□□□□□ -1.06
SYNE1-234ENST00000536990 SPXQ9BT56 116 aa8.44□□□□□ -1.06
SYNE1-234ENST00000536990 KNCNA6PVL3 124 aa8.43□□□□□ -1.06
SYNE1-234ENST00000536990 ADARB2-AS1A8MUL3 147 aa8.43□□□□□ -1.06
SYNE1-234ENST00000536990 CD28P10747 220 aa8.43□□□□□ -1.06
SYNE1-234ENST00000536990 SLURP1P55000 103 aa8.43□□□□□ -1.06
SYNE1-234ENST00000536990 CR1P17927 2039 aa8.43□□□□□ -1.06
SYNE1-234ENST00000536990 NACAE9PAV3 2078 aa8.43□□□□□ -1.06
SYNE1-234ENST00000536990 HTN1P15515 57 aa8.43□□□□□ -1.06
SYNE1-234ENST00000536990 DEFB131AP59861 70 aa8.43□□□□□ -1.06
SYNE1-234ENST00000536990 DEFB136Q30KP8 78 aa8.43□□□□□ -1.06
SYNE1-234ENST00000536990 IGHV3-73A0A0B4J1V6 119 aa8.43□□□□□ -1.06
SYNE1-234ENST00000536990 CEMP1Q6PRD7 247 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-234ENST00000536990 C18orf65Q6ZTR6 163 aa8.43□□□□□ -1.06
SYNE1-234ENST00000536990 TIMM21Q9BVV7 248 aa8.43□□□□□ -1.06
SYNE1-234ENST00000536990 GEMIN7Q9H840 131 aaKnown RBP8.43□□□□□ -1.06
SYNE1-234ENST00000536990 TRAV8-3A0A0A6YYJ7 113 aa8.42□□□□□ -1.06
SYNE1-234ENST00000536990 LINC01600Q96MT4 127 aa8.42□□□□□ -1.06
SYNE1-234ENST00000536990 CENPEQ02224 2701 aa8.42□□□□□ -1.06
SYNE1-234ENST00000536990 Q9UF83 564 aa8.42□□□□□ -1.06
SYNE1-234ENST00000536990 FBN2P35556 2912 aa8.42□□□□□ -1.06
SYNE1-234ENST00000536990 ADAMTSL4-AS1Q5T5F5 129 aa8.41□□□□□ -1.06
SYNE1-234ENST00000536990 MXRA5Q9NR99 2828 aa8.41□□□□□ -1.06
SYNE1-234ENST00000536990 IGHV1-58A0A0C4DH39 117 aa8.41□□□□□ -1.06
SYNE1-234ENST00000536990 TRBV30A0A0K0K1B3 111 aa8.41□□□□□ -1.06
SYNE1-234ENST00000536990 A8MTW9 85 aa8.41□□□□□ -1.06
SYNE1-234ENST00000536990 TMEM262E9PQX1 116 aa8.41□□□□□ -1.06
SYNE1-234ENST00000536990 ATXN8Q156A1 80 aa8.41□□□□□ -1.06
SYNE1-234ENST00000536990 LINC01620Q4KN68 170 aa8.41□□□□□ -1.06
SYNE1-234ENST00000536990 PTPN13Q12923 2485 aa8.41□□□□□ -1.06
SYNE1-234ENST00000536990 ZNF462Q96JM2 2506 aa8.4□□□□□ -1.06
SYNE1-234ENST00000536990 TRIAP1O43715 76 aa8.4□□□□□ -1.06
SYNE1-234ENST00000536990 Q1RN00 199 aa8.4□□□□□ -1.06
SYNE1-234ENST00000536990 RNASE13Q5GAN3 156 aaKnown RBP8.4□□□□□ -1.06
SYNE1-234ENST00000536990 Q6ZSN1 163 aa8.4□□□□□ -1.06
SYNE1-234ENST00000536990 CHCHD7Q9BUK0 85 aa8.4□□□□□ -1.06
SYNE1-234ENST00000536990 LRRK2Q5S007 2527 aa8.4□□□□□ -1.06
SYNE1-234ENST00000536990 H3BMM0 161 aa8.4□□□□□ -1.06
SYNE1-234ENST00000536990 PRM2P04554 102 aa8.4□□□□□ -1.06
SYNE1-234ENST00000536990 KRTAP10-9P60411 292 aa8.4□□□□□ -1.06
SYNE1-234ENST00000536990 SPANXDQ9BXN6 97 aa8.4□□□□□ -1.06
SYNE1-234ENST00000536990 SPANXCQ9NY87 97 aa8.4□□□□□ -1.06
SYNE1-234ENST00000536990 TNFRSF18Q9Y5U5 241 aa8.4□□□□□ -1.06
SYNE1-234ENST00000536990 ZFYVE26Q68DK2 2539 aa8.4□□□□□ -1.07
SYNE1-234ENST00000536990 RBMY1BA6NDE4 496 aaKnown RBP8.4□□□□□ -1.07
SYNE1-234ENST00000536990 RBMY1EA6NEQ0 496 aaKnown RBP8.4□□□□□ -1.07
SYNE1-234ENST00000536990 RBMY1DP0C7P1 496 aaKnown RBP8.4□□□□□ -1.07
SYNE1-234ENST00000536990 Q5PR19 223 aa8.4□□□□□ -1.07
SYNE1-234ENST00000536990 VSIG2Q96IQ7 327 aa8.4□□□□□ -1.07
SYNE1-234ENST00000536990 PEMTQ9UBM1 199 aa8.4□□□□□ -1.07
SYNE1-234ENST00000536990 TRAV26-1A0A087WT03 109 aa8.39□□□□□ -1.07
SYNE1-234ENST00000536990 TINCRA0A1B0GVN0 87 aa8.39□□□□□ -1.07
SYNE1-234ENST00000536990 KHDC1LQ5JSQ8 128 aa8.39□□□□□ -1.07
SYNE1-234ENST00000536990 DUX3Q96PT4 197 aa8.39□□□□□ -1.07
SYNE1-234ENST00000536990 NDUFA12Q9UI09 145 aa8.39□□□□□ -1.07
SYNE1-234ENST00000536990 DEFB113Q30KQ7 82 aa8.39□□□□□ -1.07
SYNE1-234ENST00000536990 TMEM61Q8N0U2 210 aa8.39□□□□□ -1.07
SYNE1-234ENST00000536990 NTN5Q8WTR8 489 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-234ENST00000536990 CITED1Q99966 193 aa8.39□□□□□ -1.07
SYNE1-234ENST00000536990 UBE2D4Q9Y2X8 147 aa8.39□□□□□ -1.07
SYNE1-234ENST00000536990 Q8N2B8 174 aa8.38□□□□□ -1.07
SYNE1-234ENST00000536990 SPANXA1Q9NS26 97 aa8.38□□□□□ -1.07
SYNE1-234ENST00000536990 A8MZ25 164 aa8.38□□□□□ -1.07
SYNE1-234ENST00000536990 PRSS2P07478 247 aa8.38□□□□□ -1.07
SYNE1-234ENST00000536990 MIAQ16674 131 aa8.38□□□□□ -1.07
SYNE1-234ENST00000536990 PIK3CD-AS1Q5SR53 167 aa8.38□□□□□ -1.07
SYNE1-234ENST00000536990 BBC3Q96PG8 261 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-234ENST00000536990 NAV2Q8IVL1 2488 aa8.38□□□□□ -1.07
SYNE1-234ENST00000536990 TEX15Q9BXT5 2789 aa8.38□□□□□ -1.07
SYNE1-234ENST00000536990 TRBV10-2A0A0K0K1G8 114 aa8.37□□□□□ -1.07
SYNE1-234ENST00000536990 DYNLRB2Q8TF09 96 aa8.37□□□□□ -1.07
SYNE1-234ENST00000536990 RPL13AP40429 203 aaKnown RBP8.37□□□□□ -1.07
SYNE1-234ENST00000536990 C4orf3Q8WVX3 66 aa8.37□□□□□ -1.07
SYNE1-234ENST00000536990 Q96MF0 132 aa8.37□□□□□ -1.07
SYNE1-234ENST00000536990 ICOSQ9Y6W8 199 aa8.37□□□□□ -1.07
SYNE1-234ENST00000536990 ZNF415Q09FC8 603 aa8.37□□□□□ -1.07
SYNE1-234ENST00000536990 LINC00467Q9BRT7 94 aa8.37□□□□□ -1.07
SYNE1-234ENST00000536990 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-234ENST00000536990 IGKV2-29A2NJV5 120 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-234ENST00000536990 CLUHP3Q96NS8 147 aa8.36□□□□□ -1.07
SYNE1-234ENST00000536990 ABCA12Q86UK0 2595 aa8.36□□□□□ -1.07
SYNE1-234ENST00000536990 MYO9AB2RTY4 2548 aa8.36□□□□□ -1.07
SYNE1-234ENST00000536990 ZFAND6Q6FIF0 208 aa8.36□□□□□ -1.07
SYNE1-234ENST00000536990 Q6ZSV7 163 aa8.36□□□□□ -1.07
SYNE1-234ENST00000536990 LRRC75A-AS1Q8N1F1 130 aa8.36□□□□□ -1.07
SYNE1-234ENST00000536990 MAP6D1Q9H9H5 199 aa8.36□□□□□ -1.07
SYNE1-234ENST00000536990 USP24Q9UPU5 2620 aa8.35□□□□□ -1.07
SYNE1-234ENST00000536990 TEX49A0A1B0GTD5 131 aa8.35□□□□□ -1.07
SYNE1-234ENST00000536990 RNF183Q96D59 192 aa8.35□□□□□ -1.07
SYNE1-234ENST00000536990 ZNF843Q8N446 348 aa8.35□□□□□ -1.07
SYNE1-234ENST00000536990 C11orf72Q8NBR9 251 aa8.35□□□□□ -1.07
SYNE1-234ENST00000536990 LINC01587Q99440 93 aa8.35□□□□□ -1.07
SYNE1-234ENST00000536990 IGHV3-53P01767 116 aa8.35□□□□□ -1.07
SYNE1-234ENST00000536990 H7C423 109 aa8.34□□□□□ -1.07
SYNE1-234ENST00000536990 TIMM17BO60830 172 aa8.34□□□□□ -1.07
SYNE1-234ENST00000536990 NPC2P61916 151 aa8.34□□□□□ -1.07
SYNE1-234ENST00000536990 DEFB114Q30KQ6 69 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms