RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 LINC01356Q8N9X3 169 aa4.71□□□□□ -1.66
SYNE1-233ENST00000535896 PTH2Q96A98 100 aa4.71□□□□□ -1.66
SYNE1-233ENST00000535896 PRO1854Q9UHT4 67 aa4.71□□□□□ -1.66
SYNE1-233ENST00000535896 SETD2Q9BYW2 2564 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-233ENST00000535896 IGHV3-16A0A0C4DH30 117 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 TMEM223A0PJW6 202 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 A8MWV9 139 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 M0QY20 66 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 MSMBP08118 114 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 IGHV4-31P0DP07 118 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 SMAGPQ0VAQ4 97 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 AMTNQ6UX39 209 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 TMEM219Q86XT9 240 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 TEX29Q8N6K0 151 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 C20orf203Q8NBC4 194 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 ZNF418Q8TF45 676 aaPredicted RBP4.7□□□□□ -1.66
SYNE1-233ENST00000535896 AMELXQ99217 191 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 GTSF1LQ9H1H1 148 aa4.7□□□□□ -1.66
SYNE1-233ENST00000535896 IGHV1OR15-1A0A075B7D0 117 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 TRAV2A0A0B4J234 112 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 LOC107984156A0A0G2JMH3 177 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 A8MTW9 85 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 I3L3M4 83 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 GNRH2O43555 120 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 TRBV12-3P01733 135 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 PSMB8P28062 276 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 RPL11P62913 178 aaKnown RBP4.69□□□□□ -1.66
SYNE1-233ENST00000535896 TMEM170BQ5T4T1 132 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 Q6ZQT7 251 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 SH2D6Q7Z4S9 175 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 ARL17AQ8IVW1 177 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 MAPK1IP1LQ8NDC0 245 aa4.69□□□□□ -1.66
SYNE1-233ENST00000535896 NIPBLQ6KC79 2804 aaeCLIP4.69□□□□□ -1.66
SYNE1-233ENST00000535896 H3BUX3 64 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 J3QLI3 93 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 K7EQG2 157 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 RHODO00212 210 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 TGFAP01135 160 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 CFC1BP0CG36 223 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 CFC1P0CG37 223 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 PSMB2P49721 201 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 KRTAP1-1Q07627 177 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 ZNF56Q15929 161 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 KRTAP5-3Q6L8H2 238 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 ZNRF2Q8NHG8 242 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 LINC00467Q9BRT7 94 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 SPANXA1Q9NS26 97 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 FN1P02751 2386 aaKnown RBP4.68□□□□□ -1.66
SYNE1-233ENST00000535896 JMJD1CQ15652 2540 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 SVEP1Q4LDE5 3571 aa4.68□□□□□ -1.66
SYNE1-233ENST00000535896 MXRA5Q9NR99 2828 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 A0A0J9YXY3 114 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 TRBV30A0A0K0K1B3 111 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 F5H697 171 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 F6UB75 175 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 M0R2P5 195 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 TIMM17BO60830 172 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 LY6G6DO95868 133 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 TCL1BO95988 128 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 IGHV3-33P01772 117 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 ZNF688P0C7X2 276 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 ZNF22P17026 224 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-233ENST00000535896 RPL13AP40429 203 aaKnown RBP4.67□□□□□ -1.66
SYNE1-233ENST00000535896 TSPEAR-AS2P59090 65 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 MRPS36P82909 103 aaKnown RBP4.67□□□□□ -1.66
SYNE1-233ENST00000535896 ATXN8Q156A1 80 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 Q6ZUT4 128 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 SPXQ9BT56 116 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 SPANXDQ9BXN6 97 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 CDIP1Q9H305 208 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 PPDPFQ9H3Y8 114 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 SPANXCQ9NY87 97 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 ZFHX3Q15911 3703 aa4.67□□□□□ -1.66
SYNE1-233ENST00000535896 IGLV4-3A0A075B6K6 122 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 TRAV12-3A0A0B4J271 114 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 H3BT86 120 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 IGHV3-11P01762 117 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 ELANEP08246 267 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 SCGB1C2P0DMR2 95 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 IFITM1P13164 125 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 CKS1BP61024 79 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 RPL39P62891 51 aaKnown RBP4.66□□□□□ -1.66
SYNE1-233ENST00000535896 MRPL23Q16540 153 aaKnown RBP4.66□□□□□ -1.66
SYNE1-233ENST00000535896 Q6Q795 121 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 BRD3OSQ6XYD6 125 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 KLHL30-AS1Q8NEE0 82 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 TMEM263Q8WUH6 116 aaKnown RBP4.66□□□□□ -1.66
SYNE1-233ENST00000535896 COPS9Q8WXC6 57 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 DNAJC30Q96LL9 226 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 YAE1D1Q9NRH1 226 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 LINC00527Q9UJ94 153 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 ERG28Q9UKR5 140 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 SELENOKQ9Y6D0 94 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 NF1P21359 2839 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 C2CD3Q4AC94 2353 aa4.66□□□□□ -1.66
SYNE1-233ENST00000535896 A0A087WWL8 130 aa4.65□□□□□ -1.66
SYNE1-233ENST00000535896 IGHV1-58A0A0C4DH39 117 aa4.65□□□□□ -1.66
SYNE1-233ENST00000535896 FAM240AA0A1B0GVK7 77 aa4.65□□□□□ -1.66
SYNE1-233ENST00000535896 TINCRA0A1B0GVN0 87 aa4.65□□□□□ -1.66
SYNE1-233ENST00000535896 A4D1N5 150 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms