RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 REG3AQ06141 175 aa8.7□□□□□ -1.02
VPS28-211ENST00000530790 GATD1Q8NB37 220 aa8.7□□□□□ -1.02
VPS28-211ENST00000530790 DEFB104AQ8WTQ1 72 aa8.7□□□□□ -1.02
VPS28-211ENST00000530790 FAT1Q14517 4588 aa8.69□□□□□ -1.02
VPS28-211ENST00000530790 A0A1B0GUV1 79 aa8.69□□□□□ -1.02
VPS28-211ENST00000530790 ZNF727A8MUV8 499 aa8.69□□□□□ -1.02
VPS28-211ENST00000530790 TEX261Q6UWH6 196 aa8.69□□□□□ -1.02
VPS28-211ENST00000530790 LINC01551Q86U37 167 aa8.69□□□□□ -1.02
VPS28-211ENST00000530790 C20orf203Q8NBC4 194 aa8.69□□□□□ -1.02
VPS28-211ENST00000530790 IGLV10-54A0A075B6I4 117 aa8.68□□□□□ -1.02
VPS28-211ENST00000530790 SRP19P09132 144 aaKnown RBP8.68□□□□□ -1.02
VPS28-211ENST00000530790 SCXQ7RTU7 201 aa8.68□□□□□ -1.02
VPS28-211ENST00000530790 RPL39LQ96EH5 51 aaKnown RBP8.68□□□□□ -1.02
VPS28-211ENST00000530790 IGLV4-60A0A075B6I1 120 aa8.67□□□□□ -1.02
VPS28-211ENST00000530790 TRAV8-4A0A0B4J246 113 aa8.67□□□□□ -1.02
VPS28-211ENST00000530790 HIGD1CA8MV81 97 aa8.67□□□□□ -1.02
VPS28-211ENST00000530790 FOXA3P55318 350 aaPredicted RBP8.67□□□□□ -1.02
VPS28-211ENST00000530790 LINC00528Q8N1L1 170 aa8.67□□□□□ -1.02
VPS28-211ENST00000530790 TSKUQ8WUA8 353 aa8.67□□□□□ -1.02
VPS28-211ENST00000530790 GFRA4Q9GZZ7 299 aa8.67□□□□□ -1.02
VPS28-211ENST00000530790 SRRM2Q9UQ35 2752 aaKnown RBP8.66□□□□□ -1.02
VPS28-211ENST00000530790 A0A1B0GUT8 65 aa8.66□□□□□ -1.02
VPS28-211ENST00000530790 NCR2O95944 276 aa8.66□□□□□ -1.02
VPS28-211ENST00000530790 APCSP02743 223 aa8.66□□□□□ -1.02
VPS28-211ENST00000530790 PLA2G1BP04054 148 aaKnown RBP8.66□□□□□ -1.02
VPS28-211ENST00000530790 PRSS1P07477 247 aa8.66□□□□□ -1.02
VPS28-211ENST00000530790 KRTAP26-1Q6PEX3 210 aa8.66□□□□□ -1.02
VPS28-211ENST00000530790 CHAC1Q9BUX1 264 aa8.66□□□□□ -1.02
VPS28-211ENST00000530790 OSTCQ9NRP0 149 aa8.66□□□□□ -1.02
VPS28-211ENST00000530790 FAM231BA6NCW3 169 aa8.65□□□□□ -1.02
VPS28-211ENST00000530790 SDHAF1A6NFY7 115 aa8.65□□□□□ -1.02
VPS28-211ENST00000530790 AMMECR1LQ6DCA0 310 aa8.65□□□□□ -1.02
VPS28-211ENST00000530790 VPS13BQ7Z7G8 4022 aa8.64□□□□□ -1.03
VPS28-211ENST00000530790 FAM74A3Q4VXF1 159 aa8.64□□□□□ -1.03
VPS28-211ENST00000530790 DGAT2L7PQ6IED9 249 aa8.64□□□□□ -1.03
VPS28-211ENST00000530790 CLRN3Q8NCR9 226 aa8.64□□□□□ -1.03
VPS28-211ENST00000530790 TMEM191AQ9H0A3 160 aa8.64□□□□□ -1.03
VPS28-211ENST00000530790 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.63□□□□□ -1.03
VPS28-211ENST00000530790 IGKV2-29A2NJV5 120 aaPredicted RBP8.63□□□□□ -1.03
VPS28-211ENST00000530790 I3L3M4 83 aa8.63□□□□□ -1.03
VPS28-211ENST00000530790 TMEM241Q24JQ0 296 aa8.63□□□□□ -1.03
VPS28-211ENST00000530790 RNASEKQ6P5S7 137 aaKnown RBP8.63□□□□□ -1.03
VPS28-211ENST00000530790 CIRBP-AS1Q8TBR5 109 aa8.63□□□□□ -1.03
VPS28-211ENST00000530790 ISOC2Q96AB3 205 aa8.63□□□□□ -1.03
VPS28-211ENST00000530790 ST20Q9HBF5 79 aa8.63□□□□□ -1.03
VPS28-211ENST00000530790 DNAH8Q96JB1 4490 aa8.62□□□□□ -1.03
VPS28-211ENST00000530790 IGKV3OR2-268A0A0C4DH90 116 aa8.62□□□□□ -1.03
VPS28-211ENST00000530790 TRBV6-5A0A0K0K1A5 114 aa8.62□□□□□ -1.03
VPS28-211ENST00000530790 hDV102S1A0JD36 115 aa8.62□□□□□ -1.03
VPS28-211ENST00000530790 H7C423 109 aa8.62□□□□□ -1.03
VPS28-211ENST00000530790 PMCHP20382 165 aa8.62□□□□□ -1.03
VPS28-211ENST00000530790 ADIRFQ15847 76 aa8.62□□□□□ -1.03
VPS28-211ENST00000530790 MRAP2Q96G30 205 aa8.62□□□□□ -1.03
VPS28-211ENST00000530790 V9GYV3 84 aa8.62□□□□□ -1.03
VPS28-211ENST00000530790 FGF6P10767 208 aa8.61□□□□□ -1.03
VPS28-211ENST00000530790 ZNF25P17030 456 aaPredicted RBP8.61□□□□□ -1.03
VPS28-211ENST00000530790 RPL23P62829 140 aaKnown RBP8.61□□□□□ -1.03
VPS28-211ENST00000530790 RIGQ13278 110 aa8.61□□□□□ -1.03
VPS28-211ENST00000530790 AMN1Q8IY45 258 aa8.61□□□□□ -1.03
VPS28-211ENST00000530790 C9orf163Q8N9P6 203 aa8.61□□□□□ -1.03
VPS28-211ENST00000530790 AP5S1Q9NUS5 200 aa8.61□□□□□ -1.03
VPS28-211ENST00000530790 NAT8Q9UHE5 227 aa8.61□□□□□ -1.03
VPS28-211ENST00000530790 NAT8BQ9UHF3 227 aa8.61□□□□□ -1.03
VPS28-211ENST00000530790 GAGE12HA6NDE8 117 aa8.6□□□□□ -1.03
VPS28-211ENST00000530790 CNBPP62633 177 aaKnown RBP8.6□□□□□ -1.03
VPS28-211ENST00000530790 PEA15Q15121 130 aa8.6□□□□□ -1.03
VPS28-211ENST00000530790 NUP35Q8NFH5 326 aa8.6□□□□□ -1.03
VPS28-211ENST00000530790 RNF185Q96GF1 192 aa8.6□□□□□ -1.03
VPS28-211ENST00000530790 BTF3L4Q96K17 158 aa8.6□□□□□ -1.03
VPS28-211ENST00000530790 TMEM242Q9NWH2 141 aa8.6□□□□□ -1.03
VPS28-211ENST00000530790 DMBT1Q9UGM3 2413 aaPredicted RBP8.6□□□□□ -1.03
VPS28-211ENST00000530790 MYCBP2O75592 4640 aa8.59□□□□□ -1.03
VPS28-211ENST00000530790 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.59□□□□□ -1.03
VPS28-211ENST00000530790 C9JQL5 133 aa8.59□□□□□ -1.03
VPS28-211ENST00000530790 GAS8-AS1O95177 125 aa8.59□□□□□ -1.03
VPS28-211ENST00000530790 TSHBP01222 138 aa8.59□□□□□ -1.03
VPS28-211ENST00000530790 RAB4AP20338 218 aa8.59□□□□□ -1.03
VPS28-211ENST00000530790 RPS10P46783 165 aaKnown RBP8.59□□□□□ -1.03
VPS28-211ENST00000530790 TMEM101Q96IK0 257 aa8.59□□□□□ -1.03
VPS28-211ENST00000530790 SMDT1Q9H4I9 107 aa8.59□□□□□ -1.03
VPS28-211ENST00000530790 CFAP161Q6P656 301 aa8.58□□□□□ -1.04
VPS28-211ENST00000530790 CHCHD10Q8WYQ3 142 aaPredicted RBP8.58□□□□□ -1.04
VPS28-211ENST00000530790 TRBV27A0A0K0K1C4 114 aa8.57□□□□□ -1.04
VPS28-211ENST00000530790 C7orf77A4D0Y5 90 aa8.57□□□□□ -1.04
VPS28-211ENST00000530790 PPP1R17O96001 155 aa8.57□□□□□ -1.04
VPS28-211ENST00000530790 SRSF3P84103 164 aaKnown RBP8.57□□□□□ -1.04
VPS28-211ENST00000530790 OR5A1Q8NGJ0 315 aa8.57□□□□□ -1.04
VPS28-211ENST00000530790 FLG2Q5D862 2391 aaPredicted RBP8.57□□□□□ -1.04
VPS28-211ENST00000530790 IGHV3-64A0A075B6Q5 118 aa8.56□□□□□ -1.04
VPS28-211ENST00000530790 SMIM27A0A1W2PRY6 76 aa8.56□□□□□ -1.04
VPS28-211ENST00000530790 SMKR1H3BMG3 65 aa8.56□□□□□ -1.04
VPS28-211ENST00000530790 ESDP10768 282 aa8.56□□□□□ -1.04
VPS28-211ENST00000530790 FCER1GP30273 86 aa8.56□□□□□ -1.04
VPS28-211ENST00000530790 POLR2KP53803 58 aaKnown RBP8.56□□□□□ -1.04
VPS28-211ENST00000530790 C15orf56Q8N910 161 aa8.56□□□□□ -1.04
VPS28-211ENST00000530790 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.56□□□□□ -1.04
VPS28-211ENST00000530790 SUMO2P61956 95 aaKnown RBP8.55□□□□□ -1.04
VPS28-211ENST00000530790 SDIM1Q6ZPB5 146 aa8.55□□□□□ -1.04
VPS28-211ENST00000530790 MRPL52Q86TS9 123 aaKnown RBP8.55□□□□□ -1.04
VPS28-211ENST00000530790 HERC1Q15751 4861 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms