RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 MRPL23Q16540 153 aaKnown RBP5.16□□□□□ -1.58
CD44-228ENST00000528455 KIAA1644Q3SXP7 199 aa5.16□□□□□ -1.58
CD44-228ENST00000528455 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.16□□□□□ -1.58
CD44-228ENST00000528455 PHLDA1Q8WV24 401 aaPredicted RBP5.16□□□□□ -1.58
CD44-228ENST00000528455 RPL36ALQ969Q0 106 aaKnown RBP5.16□□□□□ -1.58
CD44-228ENST00000528455 VSIG2Q96IQ7 327 aa5.16□□□□□ -1.58
CD44-228ENST00000528455 ST20Q9HBF5 79 aa5.16□□□□□ -1.58
CD44-228ENST00000528455 RYR2Q92736 4967 aa5.16□□□□□ -1.58
CD44-228ENST00000528455 TRAV26-1A0A087WT03 109 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 TRAV26-2A0A0B4J265 109 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 TRBV27A0A0K0K1C4 114 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 LCE6AA0A183 80 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 C1orf196B1AJZ1 125 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 TCAPO15273 167 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 GAS8-AS1O95177 125 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 HTN3P15516 51 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 SRIP30626 198 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 TCTAP57738 103 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 SUMO2P61956 95 aaKnown RBP5.15□□□□□ -1.59
CD44-228ENST00000528455 Q0VG73 95 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 OR10J3Q5JRS4 329 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 DAZ4Q86SG3 579 aaKnown RBP5.15□□□□□ -1.59
CD44-228ENST00000528455 NEXN-AS1Q8NBZ9 246 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 ZNRF2Q8NHG8 242 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 DAZ3Q9NR90 486 aaKnown RBP5.15□□□□□ -1.59
CD44-228ENST00000528455 Q9UF83 564 aa5.15□□□□□ -1.59
CD44-228ENST00000528455 SDHAF1A6NFY7 115 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 SMKR1H3BMG3 65 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 I3L3M4 83 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 NPYP01303 97 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 LINC00614P0C842 121 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 P0DMU3 169 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 FAM231AP0DMU4 169 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 FAM231CP0DMU5 169 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 PMCHP20382 165 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 G0S2P27469 103 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 RAB5BP61020 215 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 UBE2D3P61077 147 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 UBE2D2P62837 147 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 TMEM97Q5BJF2 176 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 CEMP1Q6PRD7 247 aaPredicted RBP5.14□□□□□ -1.59
CD44-228ENST00000528455 NIT1Q86X76 327 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 Q8N8P6 123 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 C15orf53Q8NAA6 179 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 PRSS3P2Q8NHM4 247 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 C18orf32Q8TCD1 76 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 RPL39LQ96EH5 51 aaKnown RBP5.14□□□□□ -1.59
CD44-228ENST00000528455 TMEM70Q9BUB7 260 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 GTSF1LQ9H1H1 148 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 MAP1LC3AQ9H492 121 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 NXT2Q9NPJ8 142 aaKnown RBP5.14□□□□□ -1.59
CD44-228ENST00000528455 SACSQ9NZJ4 4579 aa5.14□□□□□ -1.59
CD44-228ENST00000528455 IGLV2-18A0A075B6J9 118 aa5.13□□□□□ -1.59
CD44-228ENST00000528455 A0A096LPF7 62 aa5.13□□□□□ -1.59
CD44-228ENST00000528455 A0A0J9YY99 117 aa5.13□□□□□ -1.59
CD44-228ENST00000528455 NUPR2A6NF83 97 aa5.13□□□□□ -1.59
CD44-228ENST00000528455 LINC01546A6NGU7 62 aa5.13□□□□□ -1.59
CD44-228ENST00000528455 NCR2O95944 276 aa5.13□□□□□ -1.59
CD44-228ENST00000528455 NEGR1Q7Z3B1 354 aa5.13□□□□□ -1.59
CD44-228ENST00000528455 ATP6V0E2Q8NHE4 81 aa5.13□□□□□ -1.59
CD44-228ENST00000528455 KIR2DL4Q99706 377 aa5.13□□□□□ -1.59
CD44-228ENST00000528455 KRTAP4-5Q9BYR2 181 aa5.13□□□□□ -1.59
CD44-228ENST00000528455 KLK5Q9Y337 293 aaPredicted RBP5.13□□□□□ -1.59
CD44-228ENST00000528455 COX11Q9Y6N1 276 aa5.13□□□□□ -1.59
CD44-228ENST00000528455 ICOSQ9Y6W8 199 aa5.13□□□□□ -1.59
CD44-228ENST00000528455 HYDINQ4G0P3 5121 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 LOC100131303A0A0U1RQF7 123 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 LOC389332A0A1B0GUA5 103 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 GAGE12JA6NER3 117 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 IGLL5B9A064 214 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 HIST1H2BKO60814 126 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 HIST1H2BJP06899 126 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 LINC00694P0DN24 101 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 HIST1H2BOP23527 126 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 HIST1H2BBP33778 126 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 IFI27P40305 119 aaPredicted RBP5.12□□□□□ -1.59
CD44-228ENST00000528455 HIST1H2BDP58876 126 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 HIST1H2BCP62807 126 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 GAGE1Q13065 139 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 GAGE4Q13068 117 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 GAGE5Q13069 117 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 HIST2H2BEQ16778 126 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.12□□□□□ -1.59
CD44-228ENST00000528455 HIST1H2BHQ93079 126 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 HIST1H2BNQ99877 126 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 HIST1H2BMQ99879 126 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 SMIM2Q9BVW6 85 aa5.12□□□□□ -1.59
CD44-228ENST00000528455 LINC01549A6NIU2 74 aa5.11□□□□□ -1.59
CD44-228ENST00000528455 LAGE3Q14657 143 aa5.11□□□□□ -1.59
CD44-228ENST00000528455 COA6Q5JTJ3 125 aaKnown RBP5.11□□□□□ -1.59
CD44-228ENST00000528455 LYPD5Q6UWN5 251 aa5.11□□□□□ -1.59
CD44-228ENST00000528455 BAGE3Q86Y29 109 aa5.11□□□□□ -1.59
CD44-228ENST00000528455 CHCHD1Q96BP2 118 aaKnown RBP5.11□□□□□ -1.59
CD44-228ENST00000528455 DNAH1Q9P2D7 4330 aa5.1□□□□□ -1.59
CD44-228ENST00000528455 PLECQ15149 4684 aaKnown RBP5.1□□□□□ -1.59
CD44-228ENST00000528455 TRBV6-8A0A0A6YYG3 113 aa5.1□□□□□ -1.59
CD44-228ENST00000528455 H7C423 109 aa5.1□□□□□ -1.59
CD44-228ENST00000528455 ESDP10768 282 aa5.1□□□□□ -1.59
CD44-228ENST00000528455 COTL1Q14019 142 aa5.1□□□□□ -1.59
CD44-228ENST00000528455 ORMDL2Q53FV1 153 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms