RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 TWIST1Q15672 202 aa6.77□□□□□ -1.33
PRPF40B-204ENST00000527253 MIAQ16674 131 aa6.77□□□□□ -1.33
PRPF40B-204ENST00000527253 LINC00528Q8N1L1 170 aa6.77□□□□□ -1.33
PRPF40B-204ENST00000527253 HLA-DQA1P01909 254 aa6.76□□□□□ -1.33
PRPF40B-204ENST00000527253 CIRBP-AS1Q8TBR5 109 aa6.76□□□□□ -1.33
PRPF40B-204ENST00000527253 PGLYRP4Q96LB8 373 aa6.76□□□□□ -1.33
PRPF40B-204ENST00000527253 TMEM243Q9BU79 118 aa6.76□□□□□ -1.33
PRPF40B-204ENST00000527253 IGLV10-54A0A075B6I4 117 aa6.75□□□□□ -1.33
PRPF40B-204ENST00000527253 A0A1B0GUV1 79 aa6.75□□□□□ -1.33
PRPF40B-204ENST00000527253 GATCO43716 136 aaKnown RBP6.75□□□□□ -1.33
PRPF40B-204ENST00000527253 KRTAP10-4P60372 401 aaPredicted RBP6.75□□□□□ -1.33
PRPF40B-204ENST00000527253 REG3AQ06141 175 aa6.75□□□□□ -1.33
PRPF40B-204ENST00000527253 C14orf177Q52M58 125 aa6.75□□□□□ -1.33
PRPF40B-204ENST00000527253 FAM231DQ6ZW35 169 aa6.75□□□□□ -1.33
PRPF40B-204ENST00000527253 RPL39LQ96EH5 51 aaKnown RBP6.75□□□□□ -1.33
PRPF40B-204ENST00000527253 CHAC1Q9BUX1 264 aa6.75□□□□□ -1.33
PRPF40B-204ENST00000527253 GAS8-AS1O95177 125 aa6.74□□□□□ -1.33
PRPF40B-204ENST00000527253 CEBPGP53567 150 aa6.74□□□□□ -1.33
PRPF40B-204ENST00000527253 SRP19P09132 144 aaKnown RBP6.73□□□□□ -1.33
PRPF40B-204ENST00000527253 AMTP48728 403 aa6.73□□□□□ -1.33
PRPF40B-204ENST00000527253 COTL1Q14019 142 aa6.73□□□□□ -1.33
PRPF40B-204ENST00000527253 LINC01551Q86U37 167 aa6.73□□□□□ -1.33
PRPF40B-204ENST00000527253 A8MWL6 223 aa6.72□□□□□ -1.33
PRPF40B-204ENST00000527253 PANO1I0J062 215 aa6.72□□□□□ -1.33
PRPF40B-204ENST00000527253 SLPIP03973 132 aa6.72□□□□□ -1.33
PRPF40B-204ENST00000527253 PLA2G1BP04054 148 aaKnown RBP6.72□□□□□ -1.33
PRPF40B-204ENST00000527253 DGAT2L7PQ6IED9 249 aa6.72□□□□□ -1.33
PRPF40B-204ENST00000527253 C9orf163Q8N9P6 203 aa6.72□□□□□ -1.33
PRPF40B-204ENST00000527253 FAM210AQ96ND0 272 aa6.72□□□□□ -1.33
PRPF40B-204ENST00000527253 EIF5A2Q9GZV4 153 aaKnown RBP6.72□□□□□ -1.33
PRPF40B-204ENST00000527253 TRAV8-4A0A0B4J246 113 aa6.71□□□□□ -1.34
PRPF40B-204ENST00000527253 FAM231BA6NCW3 169 aa6.71□□□□□ -1.34
PRPF40B-204ENST00000527253 C9JQL5 133 aa6.71□□□□□ -1.34
PRPF40B-204ENST00000527253 CT83Q5H943 113 aa6.71□□□□□ -1.34
PRPF40B-204ENST00000527253 SDIM1Q6ZPB5 146 aa6.71□□□□□ -1.34
PRPF40B-204ENST00000527253 RNF185Q96GF1 192 aa6.71□□□□□ -1.34
PRPF40B-204ENST00000527253 SMIM7Q9BQ49 75 aa6.71□□□□□ -1.34
PRPF40B-204ENST00000527253 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.71□□□□□ -1.34
PRPF40B-204ENST00000527253 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.7□□□□□ -1.34
PRPF40B-204ENST00000527253 IGKV2-29A2NJV5 120 aaPredicted RBP6.7□□□□□ -1.34
PRPF40B-204ENST00000527253 SDHAF1A6NFY7 115 aa6.7□□□□□ -1.34
PRPF40B-204ENST00000527253 ZNF727A8MUV8 499 aa6.7□□□□□ -1.34
PRPF40B-204ENST00000527253 UBE2L6O14933 153 aa6.7□□□□□ -1.34
PRPF40B-204ENST00000527253 NDUFS6O75380 124 aaKnown RBP6.7□□□□□ -1.34
PRPF40B-204ENST00000527253 TSKUQ8WUA8 353 aa6.7□□□□□ -1.34
PRPF40B-204ENST00000527253 OSTCQ9NRP0 149 aa6.7□□□□□ -1.34
PRPF40B-204ENST00000527253 TRBV6-5A0A0K0K1A5 114 aa6.69□□□□□ -1.34
PRPF40B-204ENST00000527253 GAGE12HA6NDE8 117 aa6.69□□□□□ -1.34
PRPF40B-204ENST00000527253 HIGD1CA8MV81 97 aa6.69□□□□□ -1.34
PRPF40B-204ENST00000527253 NCR2O95944 276 aa6.69□□□□□ -1.34
PRPF40B-204ENST00000527253 RPS10P46783 165 aaKnown RBP6.69□□□□□ -1.34
PRPF40B-204ENST00000527253 CNBPP62633 177 aaKnown RBP6.69□□□□□ -1.34
PRPF40B-204ENST00000527253 SRSF3P84103 164 aaKnown RBP6.69□□□□□ -1.34
PRPF40B-204ENST00000527253 SMIM15Q7Z3B0 74 aa6.69□□□□□ -1.34
PRPF40B-204ENST00000527253 CLRN3Q8NCR9 226 aa6.69□□□□□ -1.34
PRPF40B-204ENST00000527253 V9GYV3 84 aa6.69□□□□□ -1.34
PRPF40B-204ENST00000527253 IGKV3OR2-268A0A0C4DH90 116 aa6.68□□□□□ -1.34
PRPF40B-204ENST00000527253 A0A1B0GUT8 65 aa6.68□□□□□ -1.34
PRPF40B-204ENST00000527253 hDV102S1A0JD36 115 aa6.68□□□□□ -1.34
PRPF40B-204ENST00000527253 TSHBP01222 138 aa6.68□□□□□ -1.34
PRPF40B-204ENST00000527253 FGF6P10767 208 aa6.68□□□□□ -1.34
PRPF40B-204ENST00000527253 RAB4AP20338 218 aa6.68□□□□□ -1.34
PRPF40B-204ENST00000527253 TEX261Q6UWH6 196 aa6.68□□□□□ -1.34
PRPF40B-204ENST00000527253 C15orf56Q8N910 161 aa6.68□□□□□ -1.34
PRPF40B-204ENST00000527253 TMEM191AQ9H0A3 160 aa6.68□□□□□ -1.34
PRPF40B-204ENST00000527253 LRP1Q07954 4544 aaKnown RBP6.68□□□□□ -1.34
PRPF40B-204ENST00000527253 KRTAP29-1A8MX34 341 aaPredicted RBP6.67□□□□□ -1.34
PRPF40B-204ENST00000527253 SMKR1H3BMG3 65 aa6.67□□□□□ -1.34
PRPF40B-204ENST00000527253 I3L3M4 83 aa6.67□□□□□ -1.34
PRPF40B-204ENST00000527253 APCSP02743 223 aa6.67□□□□□ -1.34
PRPF40B-204ENST00000527253 ESDP10768 282 aa6.67□□□□□ -1.34
PRPF40B-204ENST00000527253 PMCHP20382 165 aa6.67□□□□□ -1.34
PRPF40B-204ENST00000527253 POLR2KP53803 58 aaKnown RBP6.67□□□□□ -1.34
PRPF40B-204ENST00000527253 RPL23P62829 140 aaKnown RBP6.67□□□□□ -1.34
PRPF40B-204ENST00000527253 AMN1Q8IY45 258 aa6.67□□□□□ -1.34
PRPF40B-204ENST00000527253 ISOC2Q96AB3 205 aa6.67□□□□□ -1.34
PRPF40B-204ENST00000527253 TMEM242Q9NWH2 141 aa6.67□□□□□ -1.34
PRPF40B-204ENST00000527253 H7C423 109 aa6.66□□□□□ -1.34
PRPF40B-204ENST00000527253 HNRNPA3P51991 378 aaKnown RBP6.66□□□□□ -1.34
PRPF40B-204ENST00000527253 CIRBPQ14011 172 aaKnown RBP6.66□□□□□ -1.34
PRPF40B-204ENST00000527253 TMEM241Q24JQ0 296 aa6.66□□□□□ -1.34
PRPF40B-204ENST00000527253 AMMECR1LQ6DCA0 310 aa6.66□□□□□ -1.34
PRPF40B-204ENST00000527253 RNASEKQ6P5S7 137 aaKnown RBP6.66□□□□□ -1.34
PRPF40B-204ENST00000527253 NUP35Q8NFH5 326 aa6.66□□□□□ -1.34
PRPF40B-204ENST00000527253 CHCHD10Q8WYQ3 142 aaPredicted RBP6.66□□□□□ -1.34
PRPF40B-204ENST00000527253 BORCS7Q96B45 105 aa6.66□□□□□ -1.34
PRPF40B-204ENST00000527253 ST20Q9HBF5 79 aa6.66□□□□□ -1.34
PRPF40B-204ENST00000527253 J3QL48 77 aa6.65□□□□□ -1.34
PRPF40B-204ENST00000527253 CHTF8P0CG12 524 aa6.65□□□□□ -1.34
PRPF40B-204ENST00000527253 FOXI1Q12951 378 aa6.65□□□□□ -1.34
PRPF40B-204ENST00000527253 HIGD2BQ4VC39 106 aa6.65□□□□□ -1.34
PRPF40B-204ENST00000527253 TRBV27A0A0K0K1C4 114 aa6.64□□□□□ -1.35
PRPF40B-204ENST00000527253 RPL37AP61513 92 aaKnown RBP6.64□□□□□ -1.35
PRPF40B-204ENST00000527253 FAM74A3Q4VXF1 159 aa6.64□□□□□ -1.35
PRPF40B-204ENST00000527253 NRACQ8N912 160 aa6.64□□□□□ -1.35
PRPF40B-204ENST00000527253 OR5A1Q8NGJ0 315 aa6.64□□□□□ -1.35
PRPF40B-204ENST00000527253 MRAP2Q96G30 205 aa6.64□□□□□ -1.35
PRPF40B-204ENST00000527253 IGHV3-64A0A075B6Q5 118 aa6.63□□□□□ -1.35
PRPF40B-204ENST00000527253 LINC00959A0A1B0GUT2 108 aa6.63□□□□□ -1.35
PRPF40B-204ENST00000527253 SMIM27A0A1W2PRY6 76 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms