RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PLA2G2AP14555 144 aa6.73□□□□□ -1.33
LIMCH1-218ENST00000513024 SCXQ7RTU7 201 aa6.73□□□□□ -1.33
LIMCH1-218ENST00000513024 MDFICQ9P1T7 246 aa6.73□□□□□ -1.33
LIMCH1-218ENST00000513024 TRBV30A0A0K0K1B3 111 aa6.73□□□□□ -1.33
LIMCH1-218ENST00000513024 LOC107984640A0A0U1RRK4 108 aa6.73□□□□□ -1.33
LIMCH1-218ENST00000513024 H3BUA1 57 aa6.73□□□□□ -1.33
LIMCH1-218ENST00000513024 IGHV4-59P01825 116 aa6.73□□□□□ -1.33
LIMCH1-218ENST00000513024 LINC00311Q8N616 119 aa6.73□□□□□ -1.33
LIMCH1-218ENST00000513024 Q8N9L7 120 aa6.73□□□□□ -1.33
LIMCH1-218ENST00000513024 SIRPDQ9H106 197 aa6.73□□□□□ -1.33
LIMCH1-218ENST00000513024 NDUFA4O00483 81 aa6.72□□□□□ -1.33
LIMCH1-218ENST00000513024 NANOS2P60321 138 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-218ENST00000513024 Q8TCH9 128 aa6.72□□□□□ -1.33
LIMCH1-218ENST00000513024 IGHV3-30-3P0DP02 117 aa6.72□□□□□ -1.33
LIMCH1-218ENST00000513024 DEFB112Q30KQ8 113 aa6.72□□□□□ -1.33
LIMCH1-218ENST00000513024 ZFAND3Q9H8U3 227 aa6.72□□□□□ -1.33
LIMCH1-218ENST00000513024 RPL39P62891 51 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-218ENST00000513024 C9orf47Q6ZRZ4 202 aa6.72□□□□□ -1.33
LIMCH1-218ENST00000513024 CCL24O00175 119 aa6.71□□□□□ -1.33
LIMCH1-218ENST00000513024 GP9P14770 177 aa6.71□□□□□ -1.33
LIMCH1-218ENST00000513024 NAV3Q8IVL0 2385 aa6.71□□□□□ -1.33
LIMCH1-218ENST00000513024 WT1P19544 449 aaPredicted RBP6.71□□□□□ -1.33
LIMCH1-218ENST00000513024 PATE2Q6UY27 113 aa6.71□□□□□ -1.33
LIMCH1-218ENST00000513024 IGF2BP2-AS1Q96M15 143 aa6.71□□□□□ -1.33
LIMCH1-218ENST00000513024 ZFHX2Q9C0A1 2572 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-218ENST00000513024 PTPRSQ13332 1948 aa6.71□□□□□ -1.34
LIMCH1-218ENST00000513024 TRAV7A0A075B6U4 112 aa6.71□□□□□ -1.34
LIMCH1-218ENST00000513024 TRBV7-3A0A075B6L6 115 aa6.71□□□□□ -1.34
LIMCH1-218ENST00000513024 IGHV4-30-2A0A087WSY4 118 aa6.71□□□□□ -1.34
LIMCH1-218ENST00000513024 TRIAP1O43715 76 aa6.71□□□□□ -1.34
LIMCH1-218ENST00000513024 IGHV3-33P01772 117 aa6.7□□□□□ -1.34
LIMCH1-218ENST00000513024 CAMK2N2Q96S95 79 aa6.7□□□□□ -1.34
LIMCH1-218ENST00000513024 A0A0J9YXY3 114 aa6.7□□□□□ -1.34
LIMCH1-218ENST00000513024 LRCOL1A6NCL2 159 aa6.7□□□□□ -1.34
LIMCH1-218ENST00000513024 SPAG11BQ08648 103 aa6.7□□□□□ -1.34
LIMCH1-218ENST00000513024 NCR3O14931 201 aa6.7□□□□□ -1.34
LIMCH1-218ENST00000513024 Q6JHZ5 121 aa6.7□□□□□ -1.34
LIMCH1-218ENST00000513024 SPART-AS1P0CW21 52 aa6.69□□□□□ -1.34
LIMCH1-218ENST00000513024 COX7BP24311 80 aa6.69□□□□□ -1.34
LIMCH1-218ENST00000513024 OTOGLQ3ZCN5 2332 aa6.69□□□□□ -1.34
LIMCH1-218ENST00000513024 IGFL2Q6UWQ7 119 aa6.69□□□□□ -1.34
LIMCH1-218ENST00000513024 TP73-AS1Q9UF72 201 aa6.69□□□□□ -1.34
LIMCH1-218ENST00000513024 IGHV7-4-1A0A0J9YVY3 117 aa6.69□□□□□ -1.34
LIMCH1-218ENST00000513024 PSPHP1O15172 72 aa6.69□□□□□ -1.34
LIMCH1-218ENST00000513024 IGKV1-17P01599 117 aa6.69□□□□□ -1.34
LIMCH1-218ENST00000513024 EBI3Q14213 229 aa6.69□□□□□ -1.34
LIMCH1-218ENST00000513024 PRR14LQ5THK1 2151 aa6.69□□□□□ -1.34
LIMCH1-218ENST00000513024 C4orf48Q5BLP8 95 aa6.68□□□□□ -1.34
LIMCH1-218ENST00000513024 C11orf53Q8IXP5 236 aa6.68□□□□□ -1.34
LIMCH1-218ENST00000513024 IGLV1-44P01699 117 aa6.68□□□□□ -1.34
LIMCH1-218ENST00000513024 SEM1Q6ZVN7 128 aa6.68□□□□□ -1.34
LIMCH1-218ENST00000513024 NFE4Q86UQ8 179 aa6.68□□□□□ -1.34
LIMCH1-218ENST00000513024 FAM167A-AS1Q96KT0 104 aa6.68□□□□□ -1.34
LIMCH1-218ENST00000513024 A0A0J9YY99 117 aa6.67□□□□□ -1.34
LIMCH1-218ENST00000513024 YPEL4Q96NS1 127 aa6.67□□□□□ -1.34
LIMCH1-218ENST00000513024 SPRY4Q9C004 299 aa6.67□□□□□ -1.34
LIMCH1-218ENST00000513024 IGKV1OR2-108A0A075B7D4 117 aa6.67□□□□□ -1.34
LIMCH1-218ENST00000513024 TMEM223A0PJW6 202 aa6.67□□□□□ -1.34
LIMCH1-218ENST00000513024 FAM222AQ5U5X8 452 aa6.67□□□□□ -1.34
LIMCH1-218ENST00000513024 C14orf177Q52M58 125 aa6.67□□□□□ -1.34
LIMCH1-218ENST00000513024 ANKHD1Q8IWZ3 2542 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-218ENST00000513024 CTSZQ9UBR2 303 aa6.66□□□□□ -1.34
LIMCH1-218ENST00000513024 DNAH14Q0VDD8 3507 aa6.66□□□□□ -1.34
LIMCH1-218ENST00000513024 TIRAPP58753 221 aa6.66□□□□□ -1.34
LIMCH1-218ENST00000513024 WFDC10AQ9H1F0 79 aa6.66□□□□□ -1.34
LIMCH1-218ENST00000513024 NOP10Q9NPE3 64 aaKnown RBP6.66□□□□□ -1.34
LIMCH1-218ENST00000513024 IGKV2D-24A0A075B6R9 120 aa6.66□□□□□ -1.34
LIMCH1-218ENST00000513024 K7EIM0 57 aa6.66□□□□□ -1.34
LIMCH1-218ENST00000513024 HILS1P60008 231 aa6.66□□□□□ -1.34
LIMCH1-218ENST00000513024 WFDC10BQ8IUB3 73 aa6.66□□□□□ -1.34
LIMCH1-218ENST00000513024 Q8N976 141 aa6.66□□□□□ -1.34
LIMCH1-218ENST00000513024 RITA1Q96K30 269 aa6.66□□□□□ -1.34
LIMCH1-218ENST00000513024 PRAC2D3DTV9 90 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 LST1O00453 97 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 NDUFA1O15239 70 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 FBXL19-AS1Q494R0 122 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 SPRNQ5BIV9 151 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 UFSP1Q6NVU6 142 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 C20orf203Q8NBC4 194 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 FAM215AQ9Y5M1 114 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 LY6G6EA0A0G2JKS1 128 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 A0A1B0GXF2 115 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 U3KQA8 63 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 I3L2K1 104 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 Q6ZQT7 251 aa6.65□□□□□ -1.34
LIMCH1-218ENST00000513024 SLPIP03973 132 aa6.65□□□□□ -1.35
LIMCH1-218ENST00000513024 C2orf91Q6ZV80 131 aa6.65□□□□□ -1.35
LIMCH1-218ENST00000513024 C10orf142B7Z368 130 aa6.64□□□□□ -1.35
LIMCH1-218ENST00000513024 INAFM1C9JVW0 142 aa6.64□□□□□ -1.35
LIMCH1-218ENST00000513024 ADORA2A-AS1P86434 159 aa6.64□□□□□ -1.35
LIMCH1-218ENST00000513024 IGLV10-54A0A075B6I4 117 aa6.64□□□□□ -1.35
LIMCH1-218ENST00000513024 CRIP3Q6Q6R5 217 aa6.64□□□□□ -1.35
LIMCH1-218ENST00000513024 KAAG1Q9UBP8 84 aa6.64□□□□□ -1.35
LIMCH1-218ENST00000513024 HIVEP2P31629 2446 aa6.64□□□□□ -1.35
LIMCH1-218ENST00000513024 IGHV4-61A0A0C4DH41 118 aa6.64□□□□□ -1.35
LIMCH1-218ENST00000513024 CCKP06307 115 aa6.64□□□□□ -1.35
LIMCH1-218ENST00000513024 MAPKAPK5-AS1Q8N8E1 139 aa6.64□□□□□ -1.35
LIMCH1-218ENST00000513024 ADAMTS9Q9P2N4 1935 aa6.64□□□□□ -1.35
LIMCH1-218ENST00000513024 CTSGP08311 255 aa6.64□□□□□ -1.35
LIMCH1-218ENST00000513024 RPS28P62857 69 aaKnown RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms