RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 PGPEP1Q9NXJ5 209 aa11.15□□□□□ -0.62
SNCA-209ENST00000506244 IGKV2D-24A0A075B6R9 120 aa11.14□□□□□ -0.63
SNCA-209ENST00000506244 APCSP02743 223 aa11.14□□□□□ -0.63
SNCA-209ENST00000506244 RBX1P62877 108 aa11.14□□□□□ -0.63
SNCA-209ENST00000506244 MRPL54Q6P161 138 aaKnown RBP11.14□□□□□ -0.63
SNCA-209ENST00000506244 I3L3M4 83 aa11.13□□□□□ -0.63
SNCA-209ENST00000506244 KRTAP10-2P60368 255 aa11.13□□□□□ -0.63
SNCA-209ENST00000506244 MIAQ16674 131 aa11.13□□□□□ -0.63
SNCA-209ENST00000506244 FAM104BQ5XKR9 115 aa11.13□□□□□ -0.63
SNCA-209ENST00000506244 COMMD7Q86VX2 200 aa11.13□□□□□ -0.63
SNCA-209ENST00000506244 Q8N976 141 aa11.13□□□□□ -0.63
SNCA-209ENST00000506244 C1orf43Q9BWL3 253 aa11.13□□□□□ -0.63
SNCA-209ENST00000506244 DYNC1H1Q14204 4646 aaKnown RBP11.12□□□□□ -0.63
SNCA-209ENST00000506244 A0A1B0GUV1 79 aa11.12□□□□□ -0.63
SNCA-209ENST00000506244 A0A1B0GXF2 115 aa11.12□□□□□ -0.63
SNCA-209ENST00000506244 TMEM218A2RU14 115 aa11.12□□□□□ -0.63
SNCA-209ENST00000506244 PMCHP20382 165 aa11.12□□□□□ -0.63
SNCA-209ENST00000506244 TMEM70Q9BUB7 260 aa11.12□□□□□ -0.63
SNCA-209ENST00000506244 LINC00862A6NCI5 91 aa11.11□□□□□ -0.63
SNCA-209ENST00000506244 LRCOL1A6NCL2 159 aa11.11□□□□□ -0.63
SNCA-209ENST00000506244 H7C423 109 aa11.11□□□□□ -0.63
SNCA-209ENST00000506244 NTN5Q8WTR8 489 aaPredicted RBP11.11□□□□□ -0.63
SNCA-209ENST00000506244 SEC11CQ9BY50 192 aa11.11□□□□□ -0.63
SNCA-209ENST00000506244 ADCYAP1P18509 176 aa11.1□□□□□ -0.63
SNCA-209ENST00000506244 RPS10P46783 165 aaKnown RBP11.1□□□□□ -0.63
SNCA-209ENST00000506244 MRPL51Q4U2R6 128 aaKnown RBP11.1□□□□□ -0.63
SNCA-209ENST00000506244 PRR34Q9NV39 138 aa11.1□□□□□ -0.63
SNCA-209ENST00000506244 TRBV27A0A0K0K1C4 114 aa11.09□□□□□ -0.63
SNCA-209ENST00000506244 CKS2P33552 79 aa11.09□□□□□ -0.63
SNCA-209ENST00000506244 SUMO2P61956 95 aaKnown RBP11.09□□□□□ -0.63
SNCA-209ENST00000506244 AMMECR1LQ6DCA0 310 aa11.09□□□□□ -0.63
SNCA-209ENST00000506244 ENHOQ6UWT2 76 aa11.09□□□□□ -0.63
SNCA-209ENST00000506244 LINC00269Q8N2A0 174 aa11.09□□□□□ -0.63
SNCA-209ENST00000506244 Q8N814 137 aa11.09□□□□□ -0.63
SNCA-209ENST00000506244 DEFB104AQ8WTQ1 72 aa11.09□□□□□ -0.63
SNCA-209ENST00000506244 SMKR1H3BMG3 65 aa11.08□□□□□ -0.64
SNCA-209ENST00000506244 VCYO14598 125 aa11.08□□□□□ -0.64
SNCA-209ENST00000506244 GAS8-AS1O95177 125 aa11.08□□□□□ -0.64
SNCA-209ENST00000506244 PPBPP02775 128 aa11.08□□□□□ -0.64
SNCA-209ENST00000506244 POLR2KP53803 58 aaKnown RBP11.08□□□□□ -0.64
SNCA-209ENST00000506244 REG3AQ06141 175 aa11.08□□□□□ -0.64
SNCA-209ENST00000506244 NRACQ8N912 160 aa11.08□□□□□ -0.64
SNCA-209ENST00000506244 BTF3L4Q96K17 158 aa11.08□□□□□ -0.64
SNCA-209ENST00000506244 IMMP2LQ96T52 175 aa11.08□□□□□ -0.64
SNCA-209ENST00000506244 KIR2DL4Q99706 377 aa11.08□□□□□ -0.64
SNCA-209ENST00000506244 CTDSP1Q9GZU7 261 aa11.08□□□□□ -0.64
SNCA-209ENST00000506244 TMEM242Q9NWH2 141 aa11.08□□□□□ -0.64
SNCA-209ENST00000506244 ZNF25P17030 456 aaPredicted RBP11.07□□□□□ -0.64
SNCA-209ENST00000506244 FCER1GP30273 86 aa11.07□□□□□ -0.64
SNCA-209ENST00000506244 CLPSL2Q6UWE3 100 aa11.07□□□□□ -0.64
SNCA-209ENST00000506244 C20orf203Q8NBC4 194 aa11.07□□□□□ -0.64
SNCA-209ENST00000506244 C20orf78Q9BR46 151 aa11.07□□□□□ -0.64
SNCA-209ENST00000506244 IGLV5-52A0A0A0MRZ9 124 aa11.06□□□□□ -0.64
SNCA-209ENST00000506244 TCAPO15273 167 aa11.06□□□□□ -0.64
SNCA-209ENST00000506244 TSHBP01222 138 aa11.06□□□□□ -0.64
SNCA-209ENST00000506244 IGLV4-60A0A075B6I1 120 aa11.05□□□□□ -0.64
SNCA-209ENST00000506244 TRBV24-1A0A075B6N3 115 aa11.05□□□□□ -0.64
SNCA-209ENST00000506244 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.05□□□□□ -0.64
SNCA-209ENST00000506244 TRAV8-4A0A0B4J246 113 aa11.05□□□□□ -0.64
SNCA-209ENST00000506244 IGKV2-29A2NJV5 120 aaPredicted RBP11.05□□□□□ -0.64
SNCA-209ENST00000506244 C7orf77A4D0Y5 90 aa11.05□□□□□ -0.64
SNCA-209ENST00000506244 D6R8Y8 96 aa11.05□□□□□ -0.64
SNCA-209ENST00000506244 PHOX2AO14813 284 aa11.05□□□□□ -0.64
SNCA-209ENST00000506244 CDK2AP2O75956 126 aa11.05□□□□□ -0.64
SNCA-209ENST00000506244 RPL32P62910 135 aaKnown RBP11.05□□□□□ -0.64
SNCA-209ENST00000506244 SMAGPQ0VAQ4 97 aa11.05□□□□□ -0.64
SNCA-209ENST00000506244 C14orf177Q52M58 125 aa11.05□□□□□ -0.64
SNCA-209ENST00000506244 RNASEKQ6P5S7 137 aaKnown RBP11.05□□□□□ -0.64
SNCA-209ENST00000506244 HLA-DQA1P01909 254 aa11.04□□□□□ -0.64
SNCA-209ENST00000506244 FGF6P10767 208 aa11.04□□□□□ -0.64
SNCA-209ENST00000506244 ORMDL3Q8N138 153 aa11.04□□□□□ -0.64
SNCA-209ENST00000506244 BAALCQ8WXS3 180 aa11.04□□□□□ -0.64
SNCA-209ENST00000506244 TMEM101Q96IK0 257 aa11.04□□□□□ -0.64
SNCA-209ENST00000506244 LRP1BQ9NZR2 4599 aa11.03□□□□□ -0.64
SNCA-209ENST00000506244 TRAV9-1A0A075B6T8 112 aa11.03□□□□□ -0.64
SNCA-209ENST00000506244 LECT2O14960 151 aa11.03□□□□□ -0.64
SNCA-209ENST00000506244 TNFRSF6BO95407 300 aa11.03□□□□□ -0.64
SNCA-209ENST00000506244 ESDP10768 282 aa11.03□□□□□ -0.64
SNCA-209ENST00000506244 MAPKAPK5-AS1Q8N8E1 139 aa11.03□□□□□ -0.64
SNCA-209ENST00000506244 DNAH5Q8TE73 4624 aa11.03□□□□□ -0.64
SNCA-209ENST00000506244 GCSHP23434 173 aa11.02□□□□□ -0.65
SNCA-209ENST00000506244 S100PP25815 95 aa11.02□□□□□ -0.65
SNCA-209ENST00000506244 WFDC2Q14508 124 aa11.02□□□□□ -0.65
SNCA-209ENST00000506244 RHEBQ15382 184 aa11.02□□□□□ -0.65
SNCA-209ENST00000506244 OR5A1Q8NGJ0 315 aa11.02□□□□□ -0.65
SNCA-209ENST00000506244 TMEM18Q96B42 140 aa11.02□□□□□ -0.65
SNCA-209ENST00000506244 SMIM2Q9BVW6 85 aa11.02□□□□□ -0.65
SNCA-209ENST00000506244 LAMTOR2Q9Y2Q5 125 aa11.02□□□□□ -0.65
SNCA-209ENST00000506244 CARHSP1Q9Y2V2 147 aaKnown RBP11.02□□□□□ -0.65
SNCA-209ENST00000506244 FUSP35637 526 aaKnown RBP eCLIP11.01□□□□□ -0.65
SNCA-209ENST00000506244 C10orf91Q5T1B1 145 aa11.01□□□□□ -0.65
SNCA-209ENST00000506244 MRPL52Q86TS9 123 aaKnown RBP11.01□□□□□ -0.65
SNCA-209ENST00000506244 IGLV10-54A0A075B6I4 117 aa11□□□□□ -0.65
SNCA-209ENST00000506244 TMEM136Q6ZRR5 245 aa11□□□□□ -0.65
SNCA-209ENST00000506244 PRELID3AQ96N28 172 aa11□□□□□ -0.65
SNCA-209ENST00000506244 KIAA1109Q2LD37 5005 aa11□□□□□ -0.65
SNCA-209ENST00000506244 NPYP01303 97 aa10.99□□□□□ -0.65
SNCA-209ENST00000506244 NDUFA5Q16718 116 aa10.99□□□□□ -0.65
SNCA-209ENST00000506244 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.98□□□□□ -0.65
SNCA-209ENST00000506244 IGKV3OR2-268A0A0C4DH90 116 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms