RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 RAB5CP51148 216 aa13.41□□□□□ -0.26
SQSTM1-210ENST00000506042 C11orf52Q96A22 123 aa13.41□□□□□ -0.26
SQSTM1-210ENST00000506042 HMSDA8MTL9 139 aa13.4□□□□□ -0.26
SQSTM1-210ENST00000506042 BCL2L11O43521 198 aa13.4□□□□□ -0.26
SQSTM1-210ENST00000506042 PDE6DO43924 150 aa13.4□□□□□ -0.26
SQSTM1-210ENST00000506042 LINC00474Q9P2X8 69 aa13.4□□□□□ -0.26
SQSTM1-210ENST00000506042 NDUFS6O75380 124 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-210ENST00000506042 CCL20P78556 96 aa13.39□□□□□ -0.27
SQSTM1-210ENST00000506042 PLAC8Q9NZF1 115 aa13.39□□□□□ -0.27
SQSTM1-210ENST00000506042 IGLV4-60A0A075B6I1 120 aa13.38□□□□□ -0.27
SQSTM1-210ENST00000506042 PANO1I0J062 215 aa13.38□□□□□ -0.27
SQSTM1-210ENST00000506042 TEX261Q6UWH6 196 aa13.38□□□□□ -0.27
SQSTM1-210ENST00000506042 G3V3Q6 166 aa13.37□□□□□ -0.27
SQSTM1-210ENST00000506042 H7C423 109 aa13.37□□□□□ -0.27
SQSTM1-210ENST00000506042 NCR2O95944 276 aa13.37□□□□□ -0.27
SQSTM1-210ENST00000506042 GTSF1Q8WW33 167 aa13.37□□□□□ -0.27
SQSTM1-210ENST00000506042 GAGE12HA6NDE8 117 aa13.36□□□□□ -0.27
SQSTM1-210ENST00000506042 NTF3P20783 257 aa13.36□□□□□ -0.27
SQSTM1-210ENST00000506042 MAJINQ3KP22 176 aa13.36□□□□□ -0.27
SQSTM1-210ENST00000506042 LYZL1Q6UWQ5 148 aa13.36□□□□□ -0.27
SQSTM1-210ENST00000506042 BTF3L4Q96K17 158 aa13.36□□□□□ -0.27
SQSTM1-210ENST00000506042 TRAV1-1A0A0B4J248 108 aa13.35□□□□□ -0.27
SQSTM1-210ENST00000506042 IGKV3OR2-268A0A0C4DH90 116 aa13.35□□□□□ -0.27
SQSTM1-210ENST00000506042 PHOX2AO14813 284 aa13.35□□□□□ -0.27
SQSTM1-210ENST00000506042 CHTF8P0CG12 524 aa13.35□□□□□ -0.27
SQSTM1-210ENST00000506042 MEF2BQ02080 365 aaPredicted RBP13.35□□□□□ -0.27
SQSTM1-210ENST00000506042 TWIST1Q15672 202 aa13.35□□□□□ -0.27
SQSTM1-210ENST00000506042 RNASEKQ6P5S7 137 aaKnown RBP13.35□□□□□ -0.27
SQSTM1-210ENST00000506042 C19orf71A6NCJ1 209 aa13.34□□□□□ -0.27
SQSTM1-210ENST00000506042 MT1HL1P0DM35 61 aa13.34□□□□□ -0.27
SQSTM1-210ENST00000506042 TAGLN2P37802 199 aaKnown RBP13.34□□□□□ -0.27
SQSTM1-210ENST00000506042 COX6A2Q02221 97 aa13.34□□□□□ -0.27
SQSTM1-210ENST00000506042 REG3GQ6UW15 175 aa13.34□□□□□ -0.27
SQSTM1-210ENST00000506042 TMEM101Q96IK0 257 aa13.34□□□□□ -0.27
SQSTM1-210ENST00000506042 APCSP02743 223 aa13.33□□□□□ -0.28
SQSTM1-210ENST00000506042 C9orf62Q8N4C0 152 aa13.33□□□□□ -0.28
SQSTM1-210ENST00000506042 MED9Q9NWA0 146 aa13.33□□□□□ -0.28
SQSTM1-210ENST00000506042 IGKV2-24A0A0C4DH68 120 aa13.32□□□□□ -0.28
SQSTM1-210ENST00000506042 ZNF25P17030 456 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-210ENST00000506042 STPG4Q8N801 248 aa13.32□□□□□ -0.28
SQSTM1-210ENST00000506042 FAM210AQ96ND0 272 aa13.32□□□□□ -0.28
SQSTM1-210ENST00000506042 SMLR1H3BR10 107 aa13.31□□□□□ -0.28
SQSTM1-210ENST00000506042 CTRLP40313 264 aa13.31□□□□□ -0.28
SQSTM1-210ENST00000506042 C15orf56Q8N910 161 aa13.31□□□□□ -0.28
SQSTM1-210ENST00000506042 CHCHD10Q8WYQ3 142 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-210ENST00000506042 LRP1Q07954 4544 aaKnown RBP13.31□□□□□ -0.28
SQSTM1-210ENST00000506042 HIGD2BQ4VC39 106 aa13.3□□□□□ -0.28
SQSTM1-210ENST00000506042 GFRA4Q9GZZ7 299 aa13.3□□□□□ -0.28
SQSTM1-210ENST00000506042 GVQW2A0A096LPI5 108 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-210ENST00000506042 SLPIP03973 132 aa13.29□□□□□ -0.28
SQSTM1-210ENST00000506042 RAB19A4D1S5 217 aa13.28□□□□□ -0.28
SQSTM1-210ENST00000506042 BORCS7Q96B45 105 aa13.28□□□□□ -0.28
SQSTM1-210ENST00000506042 LINC01600Q96MT4 127 aa13.28□□□□□ -0.28
SQSTM1-210ENST00000506042 RPP21Q9H633 154 aaKnown RBP13.28□□□□□ -0.28
SQSTM1-210ENST00000506042 PRR3P79522 188 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-210ENST00000506042 SPINK6Q6UWN8 80 aa13.27□□□□□ -0.29
SQSTM1-210ENST00000506042 CNFNQ9BYD5 112 aa13.27□□□□□ -0.29
SQSTM1-210ENST00000506042 IGHV1-58A0A0C4DH39 117 aa13.26□□□□□ -0.29
SQSTM1-210ENST00000506042 FGF6P10767 208 aa13.26□□□□□ -0.29
SQSTM1-210ENST00000506042 SMAGPQ0VAQ4 97 aa13.26□□□□□ -0.29
SQSTM1-210ENST00000506042 OR5A1Q8NGJ0 315 aa13.26□□□□□ -0.29
SQSTM1-210ENST00000506042 PRSS3P2Q8NHM4 247 aa13.26□□□□□ -0.29
SQSTM1-210ENST00000506042 ZNF561-AS1K7EIQ3 104 aa13.25□□□□□ -0.29
SQSTM1-210ENST00000506042 BCL2P10415 239 aa13.25□□□□□ -0.29
SQSTM1-210ENST00000506042 PMCHP20382 165 aa13.25□□□□□ -0.29
SQSTM1-210ENST00000506042 SS18Q15532 418 aa13.25□□□□□ -0.29
SQSTM1-210ENST00000506042 GATD1Q8NB37 220 aa13.25□□□□□ -0.29
SQSTM1-210ENST00000506042 NUDT10Q8NFP7 164 aa13.25□□□□□ -0.29
SQSTM1-210ENST00000506042 LYPD6BQ8NI32 183 aa13.25□□□□□ -0.29
SQSTM1-210ENST00000506042 ISOC2Q96AB3 205 aa13.25□□□□□ -0.29
SQSTM1-210ENST00000506042 NUDT11Q96G61 164 aa13.25□□□□□ -0.29
SQSTM1-210ENST00000506042 HMCN2Q8NDA2 5059 aa13.24□□□□□ -0.29
SQSTM1-210ENST00000506042 I3L3M4 83 aa13.24□□□□□ -0.29
SQSTM1-210ENST00000506042 CARD19Q96LW7 228 aa13.24□□□□□ -0.29
SQSTM1-210ENST00000506042 SDHAF1A6NFY7 115 aa13.23□□□□□ -0.29
SQSTM1-210ENST00000506042 Q6ZRP5 223 aa13.23□□□□□ -0.29
SQSTM1-210ENST00000506042 MRAP2Q96G30 205 aa13.23□□□□□ -0.29
SQSTM1-210ENST00000506042 FAT3Q8TDW7 4589 aa13.22□□□□□ -0.29
SQSTM1-210ENST00000506042 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-210ENST00000506042 IGKV2-29A2NJV5 120 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-210ENST00000506042 XCL1P47992 114 aa13.22□□□□□ -0.29
SQSTM1-210ENST00000506042 TRAV26-2A0A0B4J265 109 aa13.21□□□□□ -0.29
SQSTM1-210ENST00000506042 A0A0J9YXV3 536 aa13.21□□□□□ -0.29
SQSTM1-210ENST00000506042 Q6ZNX1 250 aa13.21□□□□□ -0.29
SQSTM1-210ENST00000506042 A0A096LNI7 61 aa13.2□□□□□ -0.3
SQSTM1-210ENST00000506042 A8MWL6 223 aa13.2□□□□□ -0.3
SQSTM1-210ENST00000506042 TRBV20OR9-2A0A075B6H5 130 aa13.19□□□□□ -0.3
SQSTM1-210ENST00000506042 CCL25O15444 150 aa13.19□□□□□ -0.3
SQSTM1-210ENST00000506042 MALP21145 153 aa13.19□□□□□ -0.3
SQSTM1-210ENST00000506042 FOXI1Q12951 378 aa13.19□□□□□ -0.3
SQSTM1-210ENST00000506042 RPL39LQ96EH5 51 aaKnown RBP13.19□□□□□ -0.3
SQSTM1-210ENST00000506042 ST20Q9HBF5 79 aa13.19□□□□□ -0.3
SQSTM1-210ENST00000506042 SYCNQ0VAF6 134 aa13.18□□□□□ -0.3
SQSTM1-210ENST00000506042 RNASE7Q9H1E1 156 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-210ENST00000506042 LINC00959A0A1B0GUT2 108 aa13.17□□□□□ -0.3
SQSTM1-210ENST00000506042 GATCO43716 136 aaKnown RBP13.17□□□□□ -0.3
SQSTM1-210ENST00000506042 PKHD1L1Q86WI1 4243 aa13.16□□□□□ -0.3
SQSTM1-210ENST00000506042 TRBV6-5A0A0K0K1A5 114 aa13.16□□□□□ -0.3
SQSTM1-210ENST00000506042 LOC107984640A0A0U1RRK4 108 aa13.16□□□□□ -0.3
SQSTM1-210ENST00000506042 CD164L2Q6UWJ8 174 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms