RNA–Protein interactions for RNA: ENST00000504355.5

PDLIM3-205, Transcript of PDZ and LIM domain 3, humanhuman

TSL 3

Gene PDLIM3, Length 510 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-205ENST00000504355 REG3AQ06141 175 aa10.75□□□□□ -0.69
PDLIM3-205ENST00000504355 GATD1Q8NB37 220 aa10.75□□□□□ -0.69
PDLIM3-205ENST00000504355 PRR34Q9NV39 138 aa10.75□□□□□ -0.69
PDLIM3-205ENST00000504355 USP17L23D6RBM5 183 aa10.74□□□□□ -0.69
PDLIM3-205ENST00000504355 NDUFS6O75380 124 aaKnown RBP10.74□□□□□ -0.69
PDLIM3-205ENST00000504355 CT83Q5H943 113 aa10.74□□□□□ -0.69
PDLIM3-205ENST00000504355 TEX261Q6UWH6 196 aa10.74□□□□□ -0.69
PDLIM3-205ENST00000504355 IGLV10-54A0A075B6I4 117 aa10.73□□□□□ -0.69
PDLIM3-205ENST00000504355 SRP19P09132 144 aaKnown RBP10.73□□□□□ -0.69
PDLIM3-205ENST00000504355 FOXA3P55318 350 aaPredicted RBP10.73□□□□□ -0.69
PDLIM3-205ENST00000504355 LINC01551Q86U37 167 aa10.73□□□□□ -0.69
PDLIM3-205ENST00000504355 A0A1B0GUV1 79 aa10.72□□□□□ -0.69
PDLIM3-205ENST00000504355 C20orf203Q8NBC4 194 aa10.72□□□□□ -0.69
PDLIM3-205ENST00000504355 TSKUQ8WUA8 353 aa10.72□□□□□ -0.69
PDLIM3-205ENST00000504355 RPL39LQ96EH5 51 aaKnown RBP10.72□□□□□ -0.69
PDLIM3-205ENST00000504355 IGLV4-60A0A075B6I1 120 aa10.71□□□□□ -0.69
PDLIM3-205ENST00000504355 HIGD1CA8MV81 97 aa10.71□□□□□ -0.69
PDLIM3-205ENST00000504355 Q6ZSA8 131 aa10.71□□□□□ -0.69
PDLIM3-205ENST00000504355 GFRA4Q9GZZ7 299 aa10.71□□□□□ -0.69
PDLIM3-205ENST00000504355 OSTCQ9NRP0 149 aa10.71□□□□□ -0.69
PDLIM3-205ENST00000504355 TRAV8-4A0A0B4J246 113 aa10.7□□□□□ -0.7
PDLIM3-205ENST00000504355 A0A1B0GUT8 65 aa10.7□□□□□ -0.7
PDLIM3-205ENST00000504355 TMEM241Q24JQ0 296 aa10.7□□□□□ -0.7
PDLIM3-205ENST00000504355 AMMECR1LQ6DCA0 310 aa10.7□□□□□ -0.7
PDLIM3-205ENST00000504355 MYCBP2O75592 4640 aa10.69□□□□□ -0.7
PDLIM3-205ENST00000504355 SDHAF1A6NFY7 115 aa10.69□□□□□ -0.7
PDLIM3-205ENST00000504355 APCSP02743 223 aa10.69□□□□□ -0.7
PDLIM3-205ENST00000504355 PMCHP20382 165 aa10.69□□□□□ -0.7
PDLIM3-205ENST00000504355 FAM74A3Q4VXF1 159 aa10.69□□□□□ -0.7
PDLIM3-205ENST00000504355 FAM231BA6NCW3 169 aa10.68□□□□□ -0.7
PDLIM3-205ENST00000504355 NCR2O95944 276 aa10.68□□□□□ -0.7
PDLIM3-205ENST00000504355 PLA2G1BP04054 148 aaKnown RBP10.68□□□□□ -0.7
PDLIM3-205ENST00000504355 PRSS1P07477 247 aa10.68□□□□□ -0.7
PDLIM3-205ENST00000504355 IGKV3OR2-268A0A0C4DH90 116 aa10.67□□□□□ -0.7
PDLIM3-205ENST00000504355 PEA15Q15121 130 aa10.67□□□□□ -0.7
PDLIM3-205ENST00000504355 DGAT2L7PQ6IED9 249 aa10.67□□□□□ -0.7
PDLIM3-205ENST00000504355 RNASEKQ6P5S7 137 aaKnown RBP10.67□□□□□ -0.7
PDLIM3-205ENST00000504355 KRTAP26-1Q6PEX3 210 aa10.67□□□□□ -0.7
PDLIM3-205ENST00000504355 SCXQ7RTU7 201 aa10.67□□□□□ -0.7
PDLIM3-205ENST00000504355 LINC00528Q8N1L1 170 aa10.67□□□□□ -0.7
PDLIM3-205ENST00000504355 CLRN3Q8NCR9 226 aa10.67□□□□□ -0.7
PDLIM3-205ENST00000504355 TMEM191AQ9H0A3 160 aa10.67□□□□□ -0.7
PDLIM3-205ENST00000504355 VPS13BQ7Z7G8 4022 aa10.67□□□□□ -0.7
PDLIM3-205ENST00000504355 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.66□□□□□ -0.7
PDLIM3-205ENST00000504355 IGKV2-29A2NJV5 120 aaPredicted RBP10.66□□□□□ -0.7
PDLIM3-205ENST00000504355 I3L3M4 83 aa10.66□□□□□ -0.7
PDLIM3-205ENST00000504355 RIGQ13278 110 aa10.66□□□□□ -0.7
PDLIM3-205ENST00000504355 ADIRFQ15847 76 aa10.66□□□□□ -0.7
PDLIM3-205ENST00000504355 ISOC2Q96AB3 205 aa10.66□□□□□ -0.7
PDLIM3-205ENST00000504355 CHAC1Q9BUX1 264 aa10.66□□□□□ -0.7
PDLIM3-205ENST00000504355 ST20Q9HBF5 79 aa10.66□□□□□ -0.7
PDLIM3-205ENST00000504355 FLG2Q5D862 2391 aaPredicted RBP10.66□□□□□ -0.7
PDLIM3-205ENST00000504355 H7C423 109 aa10.65□□□□□ -0.7
PDLIM3-205ENST00000504355 RPL23P62829 140 aaKnown RBP10.65□□□□□ -0.7
PDLIM3-205ENST00000504355 NAT8Q9UHE5 227 aa10.65□□□□□ -0.7
PDLIM3-205ENST00000504355 V9GYV3 84 aa10.65□□□□□ -0.7
PDLIM3-205ENST00000504355 TRBV6-5A0A0K0K1A5 114 aa10.64□□□□□ -0.71
PDLIM3-205ENST00000504355 hDV102S1A0JD36 115 aa10.64□□□□□ -0.71
PDLIM3-205ENST00000504355 RAB4AP20338 218 aa10.64□□□□□ -0.71
PDLIM3-205ENST00000504355 NUP35Q8NFH5 326 aa10.64□□□□□ -0.71
PDLIM3-205ENST00000504355 MRAP2Q96G30 205 aa10.64□□□□□ -0.71
PDLIM3-205ENST00000504355 AP5S1Q9NUS5 200 aa10.64□□□□□ -0.71
PDLIM3-205ENST00000504355 NAT8BQ9UHF3 227 aa10.64□□□□□ -0.71
PDLIM3-205ENST00000504355 FGF6P10767 208 aa10.63□□□□□ -0.71
PDLIM3-205ENST00000504355 AMN1Q8IY45 258 aa10.63□□□□□ -0.71
PDLIM3-205ENST00000504355 TMEM101Q96IK0 257 aa10.63□□□□□ -0.71
PDLIM3-205ENST00000504355 BTF3L4Q96K17 158 aa10.63□□□□□ -0.71
PDLIM3-205ENST00000504355 SRRM2Q9UQ35 2752 aaKnown RBP10.63□□□□□ -0.71
PDLIM3-205ENST00000504355 GAGE12HA6NDE8 117 aa10.62□□□□□ -0.71
PDLIM3-205ENST00000504355 C9JQL5 133 aa10.62□□□□□ -0.71
PDLIM3-205ENST00000504355 GAS8-AS1O95177 125 aa10.62□□□□□ -0.71
PDLIM3-205ENST00000504355 SRSF3P84103 164 aaKnown RBP10.62□□□□□ -0.71
PDLIM3-205ENST00000504355 C9orf163Q8N9P6 203 aa10.62□□□□□ -0.71
PDLIM3-205ENST00000504355 CIRBP-AS1Q8TBR5 109 aa10.62□□□□□ -0.71
PDLIM3-205ENST00000504355 RNF185Q96GF1 192 aa10.62□□□□□ -0.71
PDLIM3-205ENST00000504355 SMDT1Q9H4I9 107 aa10.62□□□□□ -0.71
PDLIM3-205ENST00000504355 TMEM242Q9NWH2 141 aa10.62□□□□□ -0.71
PDLIM3-205ENST00000504355 J3QL48 77 aa10.61□□□□□ -0.71
PDLIM3-205ENST00000504355 ZNF25P17030 456 aaPredicted RBP10.61□□□□□ -0.71
PDLIM3-205ENST00000504355 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.6□□□□□ -0.71
PDLIM3-205ENST00000504355 PPP1R17O96001 155 aa10.6□□□□□ -0.71
PDLIM3-205ENST00000504355 RPS10P46783 165 aaKnown RBP10.6□□□□□ -0.71
PDLIM3-205ENST00000504355 CFAP161Q6P656 301 aa10.6□□□□□ -0.71
PDLIM3-205ENST00000504355 SMKR1H3BMG3 65 aa10.59□□□□□ -0.71
PDLIM3-205ENST00000504355 TSHBP01222 138 aa10.59□□□□□ -0.71
PDLIM3-205ENST00000504355 FCER1GP30273 86 aa10.59□□□□□ -0.71
PDLIM3-205ENST00000504355 OR5A1Q8NGJ0 315 aa10.59□□□□□ -0.71
PDLIM3-205ENST00000504355 CHCHD10Q8WYQ3 142 aaPredicted RBP10.59□□□□□ -0.71
PDLIM3-205ENST00000504355 SMIM27A0A1W2PRY6 76 aa10.58□□□□□ -0.72
PDLIM3-205ENST00000504355 VCYO14598 125 aa10.58□□□□□ -0.72
PDLIM3-205ENST00000504355 CAMPP49913 170 aa10.58□□□□□ -0.72
PDLIM3-205ENST00000504355 POLR2KP53803 58 aaKnown RBP10.58□□□□□ -0.72
PDLIM3-205ENST00000504355 CNBPP62633 177 aaKnown RBP10.58□□□□□ -0.72
PDLIM3-205ENST00000504355 TRBV27A0A0K0K1C4 114 aa10.57□□□□□ -0.72
PDLIM3-205ENST00000504355 ESDP10768 282 aa10.57□□□□□ -0.72
PDLIM3-205ENST00000504355 DPH3Q96FX2 82 aa10.57□□□□□ -0.72
PDLIM3-205ENST00000504355 IGHV3-64A0A075B6Q5 118 aa10.56□□□□□ -0.72
PDLIM3-205ENST00000504355 A0A1B0GW15 77 aa10.56□□□□□ -0.72
PDLIM3-205ENST00000504355 C7orf77A4D0Y5 90 aa10.56□□□□□ -0.72
PDLIM3-205ENST00000504355 FAM104BQ5XKR9 115 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms