RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PHLDA1Q8WV24 401 aaPredicted RBP8.74□□□□□ -1.01
NUP54-202ENST00000502850 VCX2Q9H322 139 aa8.74□□□□□ -1.01
NUP54-202ENST00000502850 IGHV3-53P01767 116 aa8.73□□□□□ -1.01
NUP54-202ENST00000502850 ODF3L2Q3SX64 289 aa8.73□□□□□ -1.01
NUP54-202ENST00000502850 CFAP126Q5VTH2 177 aa8.73□□□□□ -1.01
NUP54-202ENST00000502850 FAM110AQ9BQ89 295 aa8.73□□□□□ -1.01
NUP54-202ENST00000502850 ESM1Q9NQ30 184 aa8.73□□□□□ -1.01
NUP54-202ENST00000502850 SPANXB1Q9NS25 103 aaPredicted RBP8.73□□□□□ -1.01
NUP54-202ENST00000502850 SPANXA1Q9NS26 97 aa8.73□□□□□ -1.01
NUP54-202ENST00000502850 K7ERU9 68 aa8.72□□□□□ -1.01
NUP54-202ENST00000502850 RS1O15537 224 aa8.72□□□□□ -1.01
NUP54-202ENST00000502850 P0DMU3 169 aa8.72□□□□□ -1.01
NUP54-202ENST00000502850 FAM231AP0DMU4 169 aa8.72□□□□□ -1.01
NUP54-202ENST00000502850 FAM231CP0DMU5 169 aa8.72□□□□□ -1.01
NUP54-202ENST00000502850 CD28P10747 220 aa8.72□□□□□ -1.01
NUP54-202ENST00000502850 LGALS3P17931 250 aaKnown RBP8.72□□□□□ -1.01
NUP54-202ENST00000502850 C12orf74Q32Q52 190 aa8.72□□□□□ -1.01
NUP54-202ENST00000502850 IGLV4-3A0A075B6K6 122 aa8.72□□□□□ -1.01
NUP54-202ENST00000502850 LEPROTO15243 131 aa8.72□□□□□ -1.01
NUP54-202ENST00000502850 SRSF9Q13242 221 aaKnown RBP eCLIP8.72□□□□□ -1.01
NUP54-202ENST00000502850 SPATA3Q8NHX4 192 aa8.72□□□□□ -1.01
NUP54-202ENST00000502850 PLEKHB2Q96CS7 222 aa8.72□□□□□ -1.01
NUP54-202ENST00000502850 A0A1W2PRX2 142 aa8.71□□□□□ -1.02
NUP54-202ENST00000502850 J3QQQ9 107 aa8.71□□□□□ -1.02
NUP54-202ENST00000502850 K7ERJ3 54 aa8.71□□□□□ -1.02
NUP54-202ENST00000502850 ZNRF2Q8NHG8 242 aa8.71□□□□□ -1.02
NUP54-202ENST00000502850 LINC01006Q8NI28 216 aa8.71□□□□□ -1.02
NUP54-202ENST00000502850 ZNF479Q96JC4 524 aa8.71□□□□□ -1.02
NUP54-202ENST00000502850 TMEM223A0PJW6 202 aa8.7□□□□□ -1.02
NUP54-202ENST00000502850 IGLL5B9A064 214 aa8.7□□□□□ -1.02
NUP54-202ENST00000502850 NDUFA7O95182 113 aa8.7□□□□□ -1.02
NUP54-202ENST00000502850 EMP1P54849 157 aa8.7□□□□□ -1.02
NUP54-202ENST00000502850 COTL1Q14019 142 aa8.7□□□□□ -1.02
NUP54-202ENST00000502850 OCIAD2Q56VL3 154 aa8.7□□□□□ -1.02
NUP54-202ENST00000502850 LYRM7Q5U5X0 104 aa8.7□□□□□ -1.02
NUP54-202ENST00000502850 IL17DQ8TAD2 202 aa8.7□□□□□ -1.02
NUP54-202ENST00000502850 RNASE8Q8TDE3 154 aaKnown RBP8.7□□□□□ -1.02
NUP54-202ENST00000502850 AMELXQ99217 191 aa8.7□□□□□ -1.02
NUP54-202ENST00000502850 CITED2Q99967 270 aaPredicted RBP8.7□□□□□ -1.02
NUP54-202ENST00000502850 ATRQ13535 2644 aa8.7□□□□□ -1.02
NUP54-202ENST00000502850 FBN1P35555 2871 aaKnown RBP8.7□□□□□ -1.02
NUP54-202ENST00000502850 IGHV3-73A0A0B4J1V6 119 aa8.69□□□□□ -1.02
NUP54-202ENST00000502850 A0A0J9YY99 117 aa8.69□□□□□ -1.02
NUP54-202ENST00000502850 SMAGPQ0VAQ4 97 aa8.69□□□□□ -1.02
NUP54-202ENST00000502850 RRN3P1Q2M238 152 aa8.69□□□□□ -1.02
NUP54-202ENST00000502850 TMEM263Q8WUH6 116 aaKnown RBP8.69□□□□□ -1.02
NUP54-202ENST00000502850 C1QTNF4Q9BXJ3 329 aa8.69□□□□□ -1.02
NUP54-202ENST00000502850 MRPL16Q9NX20 251 aaKnown RBP8.69□□□□□ -1.02
NUP54-202ENST00000502850 XCL2Q9UBD3 114 aa8.69□□□□□ -1.02
NUP54-202ENST00000502850 COL6A5A8TX70 2615 aa8.69□□□□□ -1.02
NUP54-202ENST00000502850 TRBV10-1A0A0K0K1A3 114 aa8.69□□□□□ -1.02
NUP54-202ENST00000502850 CIDEAO60543 219 aa8.69□□□□□ -1.02
NUP54-202ENST00000502850 ZNF22P17026 224 aaPredicted RBP8.69□□□□□ -1.02
NUP54-202ENST00000502850 HILS1P60008 231 aa8.69□□□□□ -1.02
NUP54-202ENST00000502850 MRPS36P82909 103 aaKnown RBP8.69□□□□□ -1.02
NUP54-202ENST00000502850 NAA38Q9BRA0 125 aaKnown RBP8.69□□□□□ -1.02
NUP54-202ENST00000502850 NACAE9PAV3 2078 aa8.68□□□□□ -1.02
NUP54-202ENST00000502850 SAP30O75446 220 aa8.68□□□□□ -1.02
NUP54-202ENST00000502850 C11orf44Q8N8P7 122 aa8.68□□□□□ -1.02
NUP54-202ENST00000502850 SLC25A29Q8N8R3 303 aa8.68□□□□□ -1.02
NUP54-202ENST00000502850 DEFB104AQ8WTQ1 72 aa8.68□□□□□ -1.02
NUP54-202ENST00000502850 TIMM21Q9BVV7 248 aa8.68□□□□□ -1.02
NUP54-202ENST00000502850 AZU1P20160 251 aa8.67□□□□□ -1.02
NUP54-202ENST00000502850 UBE2D1P51668 147 aa8.67□□□□□ -1.02
NUP54-202ENST00000502850 SORL1Q92673 2214 aa8.67□□□□□ -1.02
NUP54-202ENST00000502850 TRAV4A0A0B4J268 109 aa8.66□□□□□ -1.02
NUP54-202ENST00000502850 TINCRA0A1B0GVN0 87 aa8.66□□□□□ -1.02
NUP54-202ENST00000502850 TMEM238C9JI98 176 aa8.66□□□□□ -1.02
NUP54-202ENST00000502850 IGLV1-51P01701 117 aa8.66□□□□□ -1.02
NUP54-202ENST00000502850 PROK1P58294 105 aa8.66□□□□□ -1.02
NUP54-202ENST00000502850 RBX1P62877 108 aa8.66□□□□□ -1.02
NUP54-202ENST00000502850 C1orf158Q8N1D5 194 aa8.66□□□□□ -1.02
NUP54-202ENST00000502850 C16orf74Q96GX8 76 aa8.66□□□□□ -1.02
NUP54-202ENST00000502850 CHCHD7Q9BUK0 85 aa8.66□□□□□ -1.02
NUP54-202ENST00000502850 UBE2D4Q9Y2X8 147 aa8.66□□□□□ -1.02
NUP54-202ENST00000502850 TRGV1A0A0A0MS02 117 aa8.65□□□□□ -1.02
NUP54-202ENST00000502850 A0A0J9YXV3 536 aa8.65□□□□□ -1.02
NUP54-202ENST00000502850 F8W1H4 67 aa8.65□□□□□ -1.02
NUP54-202ENST00000502850 TSPEAR-AS2P59090 65 aa8.65□□□□□ -1.02
NUP54-202ENST00000502850 RPL36AP83881 106 aaKnown RBP8.65□□□□□ -1.02
NUP54-202ENST00000502850 RPL36ALQ969Q0 106 aaKnown RBP8.65□□□□□ -1.02
NUP54-202ENST00000502850 OPRPNQ99935 248 aaPredicted RBP8.65□□□□□ -1.02
NUP54-202ENST00000502850 IGHV3OR16-12A0A075B7B8 117 aa8.65□□□□□ -1.03
NUP54-202ENST00000502850 K7EQD1 137 aa8.65□□□□□ -1.03
NUP54-202ENST00000502850 DAZ2Q13117 558 aaKnown RBP8.65□□□□□ -1.03
NUP54-202ENST00000502850 DAZ4Q86SG3 579 aaKnown RBP8.65□□□□□ -1.03
NUP54-202ENST00000502850 DAZ3Q9NR90 486 aaKnown RBP8.65□□□□□ -1.03
NUP54-202ENST00000502850 IGHV3-30P01768 117 aa8.64□□□□□ -1.03
NUP54-202ENST00000502850 IGHV3-30-5P0DP03 117 aa8.64□□□□□ -1.03
NUP54-202ENST00000502850 RPL24P83731 157 aaKnown RBP8.64□□□□□ -1.03
NUP54-202ENST00000502850 Q6ZSN1 163 aa8.64□□□□□ -1.03
NUP54-202ENST00000502850 PGPEP1Q9NXJ5 209 aa8.64□□□□□ -1.03
NUP54-202ENST00000502850 PRM2P04554 102 aa8.63□□□□□ -1.03
NUP54-202ENST00000502850 DGAT2L7PQ6IED9 249 aa8.63□□□□□ -1.03
NUP54-202ENST00000502850 NDUFA11Q86Y39 141 aa8.63□□□□□ -1.03
NUP54-202ENST00000502850 IGHV1-58A0A0C4DH39 117 aa8.62□□□□□ -1.03
NUP54-202ENST00000502850 RNF151Q2KHN1 245 aa8.62□□□□□ -1.03
NUP54-202ENST00000502850 KRTAP24-1Q3LI83 254 aa8.62□□□□□ -1.03
NUP54-202ENST00000502850 GEMIN7Q9H840 131 aaKnown RBP8.62□□□□□ -1.03
NUP54-202ENST00000502850 ANK3Q12955 4377 aaKnown RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms