RNA–Protein interactions for RNA: ENST00000496711.5

GARNL3-220, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 1 (best)

Gene GARNL3, Length 1,859 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-220ENST00000496711 SCGB1D4Q6XE38 83 aa9.43□□□□□ -0.9
GARNL3-220ENST00000496711 RNASE8Q8TDE3 154 aaKnown RBP9.43□□□□□ -0.9
GARNL3-220ENST00000496711 PHLDA1Q8WV24 401 aaPredicted RBP9.43□□□□□ -0.9
GARNL3-220ENST00000496711 SMR3AQ99954 134 aa9.43□□□□□ -0.9
GARNL3-220ENST00000496711 FAM110AQ9BQ89 295 aa9.43□□□□□ -0.9
GARNL3-220ENST00000496711 CUBNO60494 3623 aa9.43□□□□□ -0.9
GARNL3-220ENST00000496711 K7EP34 96 aa9.42□□□□□ -0.9
GARNL3-220ENST00000496711 TMEM263Q8WUH6 116 aaKnown RBP9.42□□□□□ -0.9
GARNL3-220ENST00000496711 VCX2Q9H322 139 aa9.42□□□□□ -0.9
GARNL3-220ENST00000496711 PLEKHB2Q96CS7 222 aa9.42□□□□□ -0.9
GARNL3-220ENST00000496711 Q9UF83 564 aa9.42□□□□□ -0.9
GARNL3-220ENST00000496711 FASNP49327 2511 aaKnown RBP9.41□□□□□ -0.9
GARNL3-220ENST00000496711 TRGV1A0A0A0MS02 117 aa9.41□□□□□ -0.9
GARNL3-220ENST00000496711 CRYBA4P53673 196 aa9.41□□□□□ -0.9
GARNL3-220ENST00000496711 TSPEAR-AS2P59090 65 aa9.41□□□□□ -0.9
GARNL3-220ENST00000496711 SAMD5Q5TGI4 173 aa9.41□□□□□ -0.9
GARNL3-220ENST00000496711 CHCHD7Q9BUK0 85 aa9.41□□□□□ -0.9
GARNL3-220ENST00000496711 TMEM223A0PJW6 202 aa9.4□□□□□ -0.9
GARNL3-220ENST00000496711 FABP2P12104 132 aa9.4□□□□□ -0.9
GARNL3-220ENST00000496711 ZNF22P17026 224 aaPredicted RBP9.4□□□□□ -0.9
GARNL3-220ENST00000496711 AMELXQ99217 191 aa9.4□□□□□ -0.9
GARNL3-220ENST00000496711 WFDC10AQ9H1F0 79 aa9.4□□□□□ -0.9
GARNL3-220ENST00000496711 SPANXA1Q9NS26 97 aa9.4□□□□□ -0.9
GARNL3-220ENST00000496711 LGALS3P17931 250 aaKnown RBP9.4□□□□□ -0.91
GARNL3-220ENST00000496711 COTL1Q14019 142 aa9.4□□□□□ -0.91
GARNL3-220ENST00000496711 C12orf74Q32Q52 190 aa9.4□□□□□ -0.91
GARNL3-220ENST00000496711 C19orf73Q9NVV2 129 aa9.4□□□□□ -0.91
GARNL3-220ENST00000496711 SPCS1Q9Y6A9 102 aa9.4□□□□□ -0.91
GARNL3-220ENST00000496711 SETD2Q9BYW2 2564 aaPredicted RBP9.4□□□□□ -0.91
GARNL3-220ENST00000496711 A0A0J9YXV3 536 aa9.39□□□□□ -0.91
GARNL3-220ENST00000496711 J3QQQ9 107 aa9.39□□□□□ -0.91
GARNL3-220ENST00000496711 LEPROTO15243 131 aa9.39□□□□□ -0.91
GARNL3-220ENST00000496711 LY6G6DO95868 133 aa9.39□□□□□ -0.91
GARNL3-220ENST00000496711 GIG44P09565 113 aaPredicted RBP9.39□□□□□ -0.91
GARNL3-220ENST00000496711 NDUFA11Q86Y39 141 aa9.39□□□□□ -0.91
GARNL3-220ENST00000496711 FAM104AQ969W3 186 aa9.39□□□□□ -0.91
GARNL3-220ENST00000496711 UBE2D4Q9Y2X8 147 aa9.39□□□□□ -0.91
GARNL3-220ENST00000496711 HIVEP2P31629 2446 aa9.39□□□□□ -0.91
GARNL3-220ENST00000496711 IGHV3-38A0A0C4DH36 116 aa9.38□□□□□ -0.91
GARNL3-220ENST00000496711 A0A0J9YY99 117 aa9.38□□□□□ -0.91
GARNL3-220ENST00000496711 A0A1B0GWB2 263 aa9.38□□□□□ -0.91
GARNL3-220ENST00000496711 OR5A1Q8NGJ0 315 aa9.38□□□□□ -0.91
GARNL3-220ENST00000496711 C1QTNF4Q9BXJ3 329 aa9.38□□□□□ -0.91
GARNL3-220ENST00000496711 SETXQ7Z333 2677 aaKnown RBP9.38□□□□□ -0.91
GARNL3-220ENST00000496711 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.38□□□□□ -0.91
GARNL3-220ENST00000496711 TRAV4A0A0B4J268 109 aa9.38□□□□□ -0.91
GARNL3-220ENST00000496711 TMEM238LA0A1B0GVL6 79 aa9.38□□□□□ -0.91
GARNL3-220ENST00000496711 GAGE12BA1L429 117 aa9.38□□□□□ -0.91
GARNL3-220ENST00000496711 IGKV2-29A2NJV5 120 aaPredicted RBP9.38□□□□□ -0.91
GARNL3-220ENST00000496711 A6NJY4 79 aa9.38□□□□□ -0.91
GARNL3-220ENST00000496711 RPL35AP18077 110 aaKnown RBP9.38□□□□□ -0.91
GARNL3-220ENST00000496711 SRSF9Q13242 221 aaKnown RBP eCLIP9.38□□□□□ -0.91
GARNL3-220ENST00000496711 CEMP1Q6PRD7 247 aaPredicted RBP9.38□□□□□ -0.91
GARNL3-220ENST00000496711 Q6ZTI0 123 aa9.38□□□□□ -0.91
GARNL3-220ENST00000496711 C16orf74Q96GX8 76 aa9.38□□□□□ -0.91
GARNL3-220ENST00000496711 ZNF479Q96JC4 524 aa9.38□□□□□ -0.91
GARNL3-220ENST00000496711 K7EQD1 137 aa9.37□□□□□ -0.91
GARNL3-220ENST00000496711 KRTAP10-3P60369 221 aa9.37□□□□□ -0.91
GARNL3-220ENST00000496711 MRPS36P82909 103 aaKnown RBP9.37□□□□□ -0.91
GARNL3-220ENST00000496711 SPANXB1Q9NS25 103 aaPredicted RBP9.37□□□□□ -0.91
GARNL3-220ENST00000496711 GCN1Q92616 2671 aaKnown RBP9.37□□□□□ -0.91
GARNL3-220ENST00000496711 IGLL5B9A064 214 aa9.36□□□□□ -0.91
GARNL3-220ENST00000496711 PF4P02776 101 aa9.36□□□□□ -0.91
GARNL3-220ENST00000496711 DAZ2Q13117 558 aaKnown RBP9.36□□□□□ -0.91
GARNL3-220ENST00000496711 TRBV10-1A0A0K0K1A3 114 aa9.36□□□□□ -0.91
GARNL3-220ENST00000496711 RNASE13Q5GAN3 156 aaKnown RBP9.36□□□□□ -0.91
GARNL3-220ENST00000496711 Q6ZUT4 128 aa9.36□□□□□ -0.91
GARNL3-220ENST00000496711 NOP10Q9NPE3 64 aaKnown RBP9.36□□□□□ -0.91
GARNL3-220ENST00000496711 RPL36AP83881 106 aaKnown RBP9.35□□□□□ -0.91
GARNL3-220ENST00000496711 RPL36ALQ969Q0 106 aaKnown RBP9.35□□□□□ -0.91
GARNL3-220ENST00000496711 JMJD1CQ15652 2540 aa9.35□□□□□ -0.91
GARNL3-220ENST00000496711 IGHV3-64A0A075B6Q5 118 aa9.34□□□□□ -0.91
GARNL3-220ENST00000496711 PLAC8L1A1L4L8 177 aa9.34□□□□□ -0.91
GARNL3-220ENST00000496711 RRN3P1Q2M238 152 aa9.34□□□□□ -0.91
GARNL3-220ENST00000496711 LINC00482Q8N8I6 264 aa9.34□□□□□ -0.91
GARNL3-220ENST00000496711 SLC25A29Q8N8R3 303 aa9.34□□□□□ -0.91
GARNL3-220ENST00000496711 CSNK1G2-AS1Q8NCQ2 148 aa9.34□□□□□ -0.91
GARNL3-220ENST00000496711 TINCRA0A1B0GVN0 87 aa9.34□□□□□ -0.91
GARNL3-220ENST00000496711 TIMM21Q9BVV7 248 aa9.34□□□□□ -0.91
GARNL3-220ENST00000496711 UBE2D1P51668 147 aa9.33□□□□□ -0.92
GARNL3-220ENST00000496711 IGHV3-30P01768 117 aa9.32□□□□□ -0.92
GARNL3-220ENST00000496711 IGHV3-30-5P0DP03 117 aa9.32□□□□□ -0.92
GARNL3-220ENST00000496711 DAZ4Q86SG3 579 aaKnown RBP9.32□□□□□ -0.92
GARNL3-220ENST00000496711 DAZ3Q9NR90 486 aaKnown RBP9.32□□□□□ -0.92
GARNL3-220ENST00000496711 IGHV3-30-3P0DP02 117 aa9.32□□□□□ -0.92
GARNL3-220ENST00000496711 UBE2D3P61077 147 aa9.32□□□□□ -0.92
GARNL3-220ENST00000496711 UBE2D2P62837 147 aa9.32□□□□□ -0.92
GARNL3-220ENST00000496711 OCIAD2Q56VL3 154 aa9.32□□□□□ -0.92
GARNL3-220ENST00000496711 OVOL2Q9BRP0 275 aa9.32□□□□□ -0.92
GARNL3-220ENST00000496711 HECTD1Q9ULT8 2610 aa9.31□□□□□ -0.92
GARNL3-220ENST00000496711 TRGV2A0A075B6R0 118 aa9.31□□□□□ -0.92
GARNL3-220ENST00000496711 INAFM1C9JVW0 142 aa9.31□□□□□ -0.92
GARNL3-220ENST00000496711 CIDEAO60543 219 aa9.31□□□□□ -0.92
GARNL3-220ENST00000496711 GAGE7O76087 117 aa9.31□□□□□ -0.92
GARNL3-220ENST00000496711 GAGE12FP0CL80 117 aa9.31□□□□□ -0.92
GARNL3-220ENST00000496711 GAGE12GP0CL81 117 aa9.31□□□□□ -0.92
GARNL3-220ENST00000496711 GAGE12IP0CL82 117 aa9.31□□□□□ -0.92
GARNL3-220ENST00000496711 FOSL1P15407 271 aa9.31□□□□□ -0.92
GARNL3-220ENST00000496711 DGAT2L7PQ6IED9 249 aa9.31□□□□□ -0.92
GARNL3-220ENST00000496711 IGHV1-58A0A0C4DH39 117 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms