RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 SMR3BP02814 79 aaPredicted RBP10.28□□□□□ -0.76
HDAC4-213ENST00000496347 CLPSL2Q6UWE3 100 aa10.28□□□□□ -0.76
HDAC4-213ENST00000496347 LINC01551Q86U37 167 aa10.28□□□□□ -0.76
HDAC4-213ENST00000496347 UBE2L6O14933 153 aa10.27□□□□□ -0.77
HDAC4-213ENST00000496347 INAFM2P0DMQ5 153 aa10.27□□□□□ -0.77
HDAC4-213ENST00000496347 AMTP48728 403 aa10.27□□□□□ -0.77
HDAC4-213ENST00000496347 REG3AQ06141 175 aa10.27□□□□□ -0.77
HDAC4-213ENST00000496347 GATD1Q8NB37 220 aa10.27□□□□□ -0.77
HDAC4-213ENST00000496347 BORCS7Q96B45 105 aa10.27□□□□□ -0.77
HDAC4-213ENST00000496347 TRAV8-4A0A0B4J246 113 aa10.26□□□□□ -0.77
HDAC4-213ENST00000496347 TRAV26-2A0A0B4J265 109 aa10.26□□□□□ -0.77
HDAC4-213ENST00000496347 FOXA3P55318 350 aaPredicted RBP10.26□□□□□ -0.77
HDAC4-213ENST00000496347 C20orf203Q8NBC4 194 aa10.26□□□□□ -0.77
HDAC4-213ENST00000496347 GFRA4Q9GZZ7 299 aa10.26□□□□□ -0.77
HDAC4-213ENST00000496347 A0A1B0GVG6 124 aa10.25□□□□□ -0.77
HDAC4-213ENST00000496347 FAM231BA6NCW3 169 aa10.25□□□□□ -0.77
HDAC4-213ENST00000496347 ZNF727A8MUV8 499 aa10.25□□□□□ -0.77
HDAC4-213ENST00000496347 NCR2O95944 276 aa10.25□□□□□ -0.77
HDAC4-213ENST00000496347 LINC01620Q4KN68 170 aa10.25□□□□□ -0.77
HDAC4-213ENST00000496347 KRTAP26-1Q6PEX3 210 aa10.25□□□□□ -0.77
HDAC4-213ENST00000496347 TSKUQ8WUA8 353 aa10.25□□□□□ -0.77
HDAC4-213ENST00000496347 HIGD1CA8MV81 97 aa10.24□□□□□ -0.77
HDAC4-213ENST00000496347 SCXQ7RTU7 201 aa10.24□□□□□ -0.77
HDAC4-213ENST00000496347 OSTCQ9NRP0 149 aa10.24□□□□□ -0.77
HDAC4-213ENST00000496347 IGLV4-60A0A075B6I1 120 aa10.23□□□□□ -0.77
HDAC4-213ENST00000496347 A0A1B0GUT8 65 aa10.23□□□□□ -0.77
HDAC4-213ENST00000496347 SRP19P09132 144 aaKnown RBP10.23□□□□□ -0.77
HDAC4-213ENST00000496347 RPL39LQ96EH5 51 aaKnown RBP10.23□□□□□ -0.77
HDAC4-213ENST00000496347 CHAC1Q9BUX1 264 aa10.23□□□□□ -0.77
HDAC4-213ENST00000496347 HERC1Q15751 4861 aa10.23□□□□□ -0.77
HDAC4-213ENST00000496347 APCSP02743 223 aa10.22□□□□□ -0.77
HDAC4-213ENST00000496347 PLA2G1BP04054 148 aaKnown RBP10.22□□□□□ -0.77
HDAC4-213ENST00000496347 FAM74A3Q4VXF1 159 aa10.22□□□□□ -0.77
HDAC4-213ENST00000496347 DGAT2L7PQ6IED9 249 aa10.22□□□□□ -0.77
HDAC4-213ENST00000496347 LINC00528Q8N1L1 170 aa10.22□□□□□ -0.77
HDAC4-213ENST00000496347 CLRN3Q8NCR9 226 aa10.22□□□□□ -0.77
HDAC4-213ENST00000496347 IGLV10-54A0A075B6I4 117 aa10.21□□□□□ -0.77
HDAC4-213ENST00000496347 TRBV6-5A0A0K0K1A5 114 aa10.21□□□□□ -0.77
HDAC4-213ENST00000496347 SDHAF1A6NFY7 115 aa10.21□□□□□ -0.77
HDAC4-213ENST00000496347 H7C423 109 aa10.21□□□□□ -0.77
HDAC4-213ENST00000496347 PRSS1P07477 247 aa10.21□□□□□ -0.77
HDAC4-213ENST00000496347 TMEM191AQ9H0A3 160 aa10.21□□□□□ -0.77
HDAC4-213ENST00000496347 CNBPP62633 177 aaKnown RBP10.19□□□□□ -0.78
HDAC4-213ENST00000496347 AMMECR1LQ6DCA0 310 aa10.19□□□□□ -0.78
HDAC4-213ENST00000496347 DEFB104AQ8WTQ1 72 aa10.19□□□□□ -0.78
HDAC4-213ENST00000496347 ISOC2Q96AB3 205 aa10.19□□□□□ -0.78
HDAC4-213ENST00000496347 MRAP2Q96G30 205 aa10.19□□□□□ -0.78
HDAC4-213ENST00000496347 V9GYV3 84 aa10.19□□□□□ -0.78
HDAC4-213ENST00000496347 I3L3M4 83 aa10.18□□□□□ -0.78
HDAC4-213ENST00000496347 ZNF25P17030 456 aaPredicted RBP10.18□□□□□ -0.78
HDAC4-213ENST00000496347 TMEM241Q24JQ0 296 aa10.18□□□□□ -0.78
HDAC4-213ENST00000496347 SMDT1Q9H4I9 107 aa10.18□□□□□ -0.78
HDAC4-213ENST00000496347 RIGQ13278 110 aa10.17□□□□□ -0.78
HDAC4-213ENST00000496347 C9orf163Q8N9P6 203 aa10.17□□□□□ -0.78
HDAC4-213ENST00000496347 CIRBP-AS1Q8TBR5 109 aa10.17□□□□□ -0.78
HDAC4-213ENST00000496347 ST20Q9HBF5 79 aa10.17□□□□□ -0.78
HDAC4-213ENST00000496347 NAT8Q9UHE5 227 aa10.17□□□□□ -0.78
HDAC4-213ENST00000496347 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.16□□□□□ -0.78
HDAC4-213ENST00000496347 hDV102S1A0JD36 115 aa10.16□□□□□ -0.78
HDAC4-213ENST00000496347 IGKV2-29A2NJV5 120 aaPredicted RBP10.16□□□□□ -0.78
HDAC4-213ENST00000496347 FGF6P10767 208 aa10.16□□□□□ -0.78
HDAC4-213ENST00000496347 RPL23P62829 140 aaKnown RBP10.16□□□□□ -0.78
HDAC4-213ENST00000496347 PEA15Q15121 130 aa10.16□□□□□ -0.78
HDAC4-213ENST00000496347 RNF185Q96GF1 192 aa10.16□□□□□ -0.78
HDAC4-213ENST00000496347 NAT8BQ9UHF3 227 aa10.16□□□□□ -0.78
HDAC4-213ENST00000496347 TRBV27A0A0K0K1C4 114 aa10.15□□□□□ -0.78
HDAC4-213ENST00000496347 PPP1R17O96001 155 aa10.15□□□□□ -0.78
HDAC4-213ENST00000496347 PMCHP20382 165 aa10.15□□□□□ -0.78
HDAC4-213ENST00000496347 ADIRFQ15847 76 aa10.15□□□□□ -0.78
HDAC4-213ENST00000496347 RNASEKQ6P5S7 137 aaKnown RBP10.15□□□□□ -0.78
HDAC4-213ENST00000496347 AMN1Q8IY45 258 aa10.15□□□□□ -0.78
HDAC4-213ENST00000496347 NUP35Q8NFH5 326 aa10.15□□□□□ -0.78
HDAC4-213ENST00000496347 AP5S1Q9NUS5 200 aa10.15□□□□□ -0.78
HDAC4-213ENST00000496347 TSHBP01222 138 aa10.14□□□□□ -0.79
HDAC4-213ENST00000496347 RAB4AP20338 218 aa10.14□□□□□ -0.79
HDAC4-213ENST00000496347 RPS10P46783 165 aaKnown RBP10.14□□□□□ -0.79
HDAC4-213ENST00000496347 TMEM242Q9NWH2 141 aa10.14□□□□□ -0.79
HDAC4-213ENST00000496347 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.13□□□□□ -0.79
HDAC4-213ENST00000496347 C9JQL5 133 aa10.13□□□□□ -0.79
HDAC4-213ENST00000496347 GAS8-AS1O95177 125 aa10.13□□□□□ -0.79
HDAC4-213ENST00000496347 ESDP10768 282 aa10.13□□□□□ -0.79
HDAC4-213ENST00000496347 CFAP161Q6P656 301 aa10.13□□□□□ -0.79
HDAC4-213ENST00000496347 TMEM101Q96IK0 257 aa10.13□□□□□ -0.79
HDAC4-213ENST00000496347 BTF3L4Q96K17 158 aa10.13□□□□□ -0.79
HDAC4-213ENST00000496347 IGKV3OR2-268A0A0C4DH90 116 aa10.12□□□□□ -0.79
HDAC4-213ENST00000496347 A0A1B0GW15 77 aa10.12□□□□□ -0.79
HDAC4-213ENST00000496347 SMIM27A0A1W2PRY6 76 aa10.12□□□□□ -0.79
HDAC4-213ENST00000496347 C7orf77A4D0Y5 90 aa10.12□□□□□ -0.79
HDAC4-213ENST00000496347 GAGE12HA6NDE8 117 aa10.12□□□□□ -0.79
HDAC4-213ENST00000496347 POLR2KP53803 58 aaKnown RBP10.12□□□□□ -0.79
HDAC4-213ENST00000496347 C15orf56Q8N910 161 aa10.12□□□□□ -0.79
HDAC4-213ENST00000496347 OR5A1Q8NGJ0 315 aa10.12□□□□□ -0.79
HDAC4-213ENST00000496347 CHCHD10Q8WYQ3 142 aaPredicted RBP10.12□□□□□ -0.79
HDAC4-213ENST00000496347 IGHV3-64A0A075B6Q5 118 aa10.11□□□□□ -0.79
HDAC4-213ENST00000496347 SRSF3P84103 164 aaKnown RBP10.11□□□□□ -0.79
HDAC4-213ENST00000496347 SDIM1Q6ZPB5 146 aa10.11□□□□□ -0.79
HDAC4-213ENST00000496347 MRPL52Q86TS9 123 aaKnown RBP10.11□□□□□ -0.79
HDAC4-213ENST00000496347 PPP1R2P9O14990 202 aa10.1□□□□□ -0.79
HDAC4-213ENST00000496347 SUMO2P61956 95 aaKnown RBP10.1□□□□□ -0.79
HDAC4-213ENST00000496347 CIRBPQ14011 172 aaKnown RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms