RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 IFNA1P01562 189 aa14.06□□□□□ -0.16
HDDC3-203ENST00000494993 SLPIP03973 132 aa14.06□□□□□ -0.16
HDDC3-203ENST00000494993 TRBV20OR9-2A0A075B6H5 130 aa14.05□□□□□ -0.16
HDDC3-203ENST00000494993 TEX46H3BTG2 121 aa14.05□□□□□ -0.16
HDDC3-203ENST00000494993 NTF3P20783 257 aa14.05□□□□□ -0.16
HDDC3-203ENST00000494993 AMTP48728 403 aa14.05□□□□□ -0.16
HDDC3-203ENST00000494993 MEF2BQ02080 365 aaPredicted RBP14.05□□□□□ -0.16
HDDC3-203ENST00000494993 COTL1Q14019 142 aa14.05□□□□□ -0.16
HDDC3-203ENST00000494993 WDR73Q6P4I2 378 aa14.05□□□□□ -0.16
HDDC3-203ENST00000494993 Q6ZRU5 148 aa14.05□□□□□ -0.16
HDDC3-203ENST00000494993 RNF185Q96GF1 192 aa14.05□□□□□ -0.16
HDDC3-203ENST00000494993 PDE6DO43924 150 aa14.04□□□□□ -0.16
HDDC3-203ENST00000494993 CHTF8P0CG12 524 aa14.04□□□□□ -0.16
HDDC3-203ENST00000494993 MT1HL1P0DM35 61 aa14.04□□□□□ -0.16
HDDC3-203ENST00000494993 BIN3Q9NQY0 253 aa14.04□□□□□ -0.16
HDDC3-203ENST00000494993 A0A087WYN8 130 aa14.03□□□□□ -0.16
HDDC3-203ENST00000494993 SULT1A2P50226 295 aa14.03□□□□□ -0.16
HDDC3-203ENST00000494993 C9orf62Q8N4C0 152 aa14.03□□□□□ -0.16
HDDC3-203ENST00000494993 SPACA4Q8TDM5 124 aa14.03□□□□□ -0.16
HDDC3-203ENST00000494993 DPH3Q96FX2 82 aa14.03□□□□□ -0.16
HDDC3-203ENST00000494993 MED9Q9NWA0 146 aa14.03□□□□□ -0.16
HDDC3-203ENST00000494993 CTRLP40313 264 aa14.02□□□□□ -0.17
HDDC3-203ENST00000494993 EIF5AL1Q6IS14 154 aaKnown RBP14.02□□□□□ -0.17
HDDC3-203ENST00000494993 C15orf56Q8N910 161 aa14.01□□□□□ -0.17
HDDC3-203ENST00000494993 GAGE12HA6NDE8 117 aa14□□□□□ -0.17
HDDC3-203ENST00000494993 NUDT10Q8NFP7 164 aa14□□□□□ -0.17
HDDC3-203ENST00000494993 NUDT11Q96G61 164 aa14□□□□□ -0.17
HDDC3-203ENST00000494993 CNFNQ9BYD5 112 aa14□□□□□ -0.17
HDDC3-203ENST00000494993 BCL2P10415 239 aa13.99□□□□□ -0.17
HDDC3-203ENST00000494993 TWIST1Q15672 202 aa13.99□□□□□ -0.17
HDDC3-203ENST00000494993 CFAP161Q6P656 301 aa13.99□□□□□ -0.17
HDDC3-203ENST00000494993 GATD1Q8NB37 220 aa13.99□□□□□ -0.17
HDDC3-203ENST00000494993 IGKV3OR2-268A0A0C4DH90 116 aa13.98□□□□□ -0.17
HDDC3-203ENST00000494993 PLAC8Q9NZF1 115 aa13.98□□□□□ -0.17
HDDC3-203ENST00000494993 TRAV26-2A0A0B4J265 109 aa13.97□□□□□ -0.17
HDDC3-203ENST00000494993 RPP21Q9H633 154 aaKnown RBP13.96□□□□□ -0.17
HDDC3-203ENST00000494993 RPS10P46783 165 aaKnown RBP13.95□□□□□ -0.18
HDDC3-203ENST00000494993 COX6A2Q02221 97 aa13.95□□□□□ -0.18
HDDC3-203ENST00000494993 HIGD2BQ4VC39 106 aa13.95□□□□□ -0.18
HDDC3-203ENST00000494993 Q6ZNX1 250 aa13.95□□□□□ -0.18
HDDC3-203ENST00000494993 RNASE7Q9H1E1 156 aaKnown RBP13.95□□□□□ -0.18
HDDC3-203ENST00000494993 PHOX2AO14813 284 aa13.94□□□□□ -0.18
HDDC3-203ENST00000494993 NCR2O95944 276 aa13.94□□□□□ -0.18
HDDC3-203ENST00000494993 AMMECR1LQ6DCA0 310 aa13.94□□□□□ -0.18
HDDC3-203ENST00000494993 C7orf33Q8WU49 177 aa13.94□□□□□ -0.18
HDDC3-203ENST00000494993 CHCHD10Q8WYQ3 142 aaPredicted RBP13.94□□□□□ -0.18
HDDC3-203ENST00000494993 RPL39LQ96EH5 51 aaKnown RBP13.94□□□□□ -0.18
HDDC3-203ENST00000494993 TNXBP22105 4242 aa13.93□□□□□ -0.18
HDDC3-203ENST00000494993 K7EN84 100 aa13.93□□□□□ -0.18
HDDC3-203ENST00000494993 NDUFS6O75380 124 aaKnown RBP13.93□□□□□ -0.18
HDDC3-203ENST00000494993 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.92□□□□□ -0.18
HDDC3-203ENST00000494993 IGKV2-29A2NJV5 120 aaPredicted RBP13.92□□□□□ -0.18
HDDC3-203ENST00000494993 H7C423 109 aa13.92□□□□□ -0.18
HDDC3-203ENST00000494993 TAGLN2P37802 199 aaKnown RBP13.92□□□□□ -0.18
HDDC3-203ENST00000494993 RNASEKQ6P5S7 137 aaKnown RBP13.92□□□□□ -0.18
HDDC3-203ENST00000494993 PRSS3P2Q8NHM4 247 aa13.92□□□□□ -0.18
HDDC3-203ENST00000494993 APCSP02743 223 aa13.91□□□□□ -0.18
HDDC3-203ENST00000494993 MAJINQ3KP22 176 aa13.91□□□□□ -0.18
HDDC3-203ENST00000494993 SMIM15Q7Z3B0 74 aa13.91□□□□□ -0.18
HDDC3-203ENST00000494993 OCC1Q8TAD7 63 aa13.91□□□□□ -0.18
HDDC3-203ENST00000494993 GVQW2A0A096LPI5 108 aaPredicted RBP13.9□□□□□ -0.18
HDDC3-203ENST00000494993 IGKV2-24A0A0C4DH68 120 aa13.9□□□□□ -0.18
HDDC3-203ENST00000494993 FGF6P10767 208 aa13.9□□□□□ -0.18
HDDC3-203ENST00000494993 FOXA3P55318 350 aaPredicted RBP13.9□□□□□ -0.18
HDDC3-203ENST00000494993 GTSF1Q8WW33 167 aa13.9□□□□□ -0.18
HDDC3-203ENST00000494993 SDHAF1A6NFY7 115 aa13.89□□□□□ -0.19
HDDC3-203ENST00000494993 TEX261Q6UWH6 196 aa13.89□□□□□ -0.19
HDDC3-203ENST00000494993 SLC51BQ86UW2 128 aa13.89□□□□□ -0.19
HDDC3-203ENST00000494993 FOXI1Q12951 378 aa13.88□□□□□ -0.19
HDDC3-203ENST00000494993 ZNF25P17030 456 aaPredicted RBP13.87□□□□□ -0.19
HDDC3-203ENST00000494993 STPG4Q8N801 248 aa13.87□□□□□ -0.19
HDDC3-203ENST00000494993 OR5A1Q8NGJ0 315 aa13.87□□□□□ -0.19
HDDC3-203ENST00000494993 PRR3P79522 188 aaKnown RBP13.86□□□□□ -0.19
HDDC3-203ENST00000494993 A0A096LNI7 61 aa13.85□□□□□ -0.19
HDDC3-203ENST00000494993 GATCO43716 136 aaKnown RBP13.85□□□□□ -0.19
HDDC3-203ENST00000494993 TCTE3Q8IZS6 198 aa13.85□□□□□ -0.19
HDDC3-203ENST00000494993 TRBV6-5A0A0K0K1A5 114 aa13.84□□□□□ -0.19
HDDC3-203ENST00000494993 FAM231BA6NCW3 169 aa13.84□□□□□ -0.19
HDDC3-203ENST00000494993 I3L3M4 83 aa13.84□□□□□ -0.19
HDDC3-203ENST00000494993 PMCHP20382 165 aa13.84□□□□□ -0.19
HDDC3-203ENST00000494993 BTF3L4Q96K17 158 aa13.84□□□□□ -0.19
HDDC3-203ENST00000494993 XCL1P47992 114 aa13.83□□□□□ -0.2
HDDC3-203ENST00000494993 FAM231DQ6ZW35 169 aa13.83□□□□□ -0.2
HDDC3-203ENST00000494993 LYPD6BQ8NI32 183 aa13.83□□□□□ -0.2
HDDC3-203ENST00000494993 TMEM101Q96IK0 257 aa13.83□□□□□ -0.2
HDDC3-203ENST00000494993 LINC00959A0A1B0GUT2 108 aa13.82□□□□□ -0.2
HDDC3-203ENST00000494993 A8MWL6 223 aa13.82□□□□□ -0.2
HDDC3-203ENST00000494993 CCL25O15444 150 aa13.82□□□□□ -0.2
HDDC3-203ENST00000494993 ESDP10768 282 aa13.82□□□□□ -0.2
HDDC3-203ENST00000494993 LINC01600Q96MT4 127 aa13.82□□□□□ -0.2
HDDC3-203ENST00000494993 LRP2P98164 4655 aa13.81□□□□□ -0.2
HDDC3-203ENST00000494993 IGHV1-58A0A0C4DH39 117 aa13.81□□□□□ -0.2
HDDC3-203ENST00000494993 TMEM250H0YL14 139 aa13.81□□□□□ -0.2
HDDC3-203ENST00000494993 PKIGQ9Y2B9 76 aa13.81□□□□□ -0.2
HDDC3-203ENST00000494993 GAS8-AS1O95177 125 aa13.8□□□□□ -0.2
HDDC3-203ENST00000494993 TSHBP01222 138 aa13.8□□□□□ -0.2
HDDC3-203ENST00000494993 LINC00474Q9P2X8 69 aa13.8□□□□□ -0.2
HDDC3-203ENST00000494993 CT83Q5H943 113 aa13.79□□□□□ -0.2
HDDC3-203ENST00000494993 LINC00526Q96FQ7 95 aa13.79□□□□□ -0.2
HDDC3-203ENST00000494993 MRAP2Q96G30 205 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms