RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 KDM3BQ7LBC6 1761 aa-0.52□□□□□ -2.49
SMC4-223ENST00000493695 GRIN2AQ12879 1464 aa-0.52□□□□□ -2.49
SMC4-223ENST00000493695 CFDP00746 253 aaPredicted RBP-0.52□□□□□ -2.49
SMC4-223ENST00000493695 COPZ1P61923 177 aa-0.52□□□□□ -2.49
SMC4-223ENST00000493695 DPH3Q96FX2 82 aa-0.52□□□□□ -2.49
SMC4-223ENST00000493695 PLXNB2O15031 1838 aa-0.52□□□□□ -2.49
SMC4-223ENST00000493695 HECTD4Q9Y4D8 3996 aa-0.53□□□□□ -2.49
SMC4-223ENST00000493695 M0R3E3 92 aa-0.53□□□□□ -2.49
SMC4-223ENST00000493695 SIX6O95475 246 aa-0.53□□□□□ -2.49
SMC4-223ENST00000493695 SPRR2DP22532 72 aa-0.53□□□□□ -2.49
SMC4-223ENST00000493695 Q5VSD8 79 aa-0.53□□□□□ -2.49
SMC4-223ENST00000493695 CFAP126Q5VTH2 177 aa-0.53□□□□□ -2.49
SMC4-223ENST00000493695 KCNRGQ8N5I3 272 aa-0.53□□□□□ -2.49
SMC4-223ENST00000493695 MAFIPQ8WZ33 124 aa-0.53□□□□□ -2.49
SMC4-223ENST00000493695 TPT1P8Q9HAU6 139 aa-0.53□□□□□ -2.49
SMC4-223ENST00000493695 WNK3Q9BYP7 1800 aa-0.53□□□□□ -2.49
SMC4-223ENST00000493695 PPRC1Q5VV67 1664 aaKnown RBP-0.53□□□□□ -2.49
SMC4-223ENST00000493695 STAB1Q9NY15 2570 aa-0.53□□□□□ -2.5
SMC4-223ENST00000493695 SNCGO76070 127 aa-0.54□□□□□ -2.5
SMC4-223ENST00000493695 S100A7L2Q5SY68 101 aa-0.54□□□□□ -2.5
SMC4-223ENST00000493695 TCEAL4Q96EI5 215 aa-0.54□□□□□ -2.5
SMC4-223ENST00000493695 DOPEY2Q9Y3R5 2298 aa-0.54□□□□□ -2.5
SMC4-223ENST00000493695 MYH9P35579 1960 aaKnown RBP-0.55□□□□□ -2.5
SMC4-223ENST00000493695 DCHS2Q6V1P9 2916 aa-0.55□□□□□ -2.5
SMC4-223ENST00000493695 ALMS1Q8TCU4 4167 aa-0.55□□□□□ -2.5
SMC4-223ENST00000493695 FAM92AA1XBS5 289 aa-0.55□□□□□ -2.5
SMC4-223ENST00000493695 KRTAP6-1Q3LI64 71 aa-0.55□□□□□ -2.5
SMC4-223ENST00000493695 SPEF2Q9C093 1822 aa-0.55□□□□□ -2.5
SMC4-223ENST00000493695 ZANQ9Y493 2812 aa-0.56□□□□□ -2.5
SMC4-223ENST00000493695 LRP6O75581 1613 aa-0.56□□□□□ -2.5
SMC4-223ENST00000493695 HCG22E2RYF7 251 aa-0.56□□□□□ -2.5
SMC4-223ENST00000493695 SMCO1Q147U7 214 aa-0.56□□□□□ -2.5
SMC4-223ENST00000493695 SEC11CQ9BY50 192 aa-0.56□□□□□ -2.5
SMC4-223ENST00000493695 CCDC167Q9P0B6 97 aa-0.56□□□□□ -2.5
SMC4-223ENST00000493695 MRC1P22897 1456 aa-0.56□□□□□ -2.5
SMC4-223ENST00000493695 LRRC37A2A6NM11 1700 aa-0.57□□□□□ -2.5
SMC4-223ENST00000493695 SMIM6P0DI80 62 aa-0.57□□□□□ -2.5
SMC4-223ENST00000493695 DEFB109BQ30KR1 87 aa-0.57□□□□□ -2.5
SMC4-223ENST00000493695 SCN3BQ9NY72 215 aa-0.57□□□□□ -2.5
SMC4-223ENST00000493695 BICRAQ9NZM4 1560 aa-0.57□□□□□ -2.5
SMC4-223ENST00000493695 PIEZO2Q9H5I5 2752 aa-0.58□□□□□ -2.5
SMC4-223ENST00000493695 PATJQ8NI35 1801 aa-0.58□□□□□ -2.5
SMC4-223ENST00000493695 PKDREJQ9NTG1 2253 aa-0.58□□□□□ -2.5
SMC4-223ENST00000493695 TENM2Q9NT68 2774 aa-0.59□□□□□ -2.5
SMC4-223ENST00000493695 TRAV22A0A0B4J277 110 aa-0.59□□□□□ -2.5
SMC4-223ENST00000493695 BCE1O60756 84 aa-0.59□□□□□ -2.5
SMC4-223ENST00000493695 PPP1R17O96001 155 aa-0.59□□□□□ -2.5
SMC4-223ENST00000493695 PRM1P04553 51 aa-0.59□□□□□ -2.5
SMC4-223ENST00000493695 AGPAT4-IT1Q9H0P7 198 aa-0.59□□□□□ -2.5
SMC4-223ENST00000493695 PAIP2BQ9ULR5 123 aaKnown RBP-0.59□□□□□ -2.5
SMC4-223ENST00000493695 DOCK1Q14185 1865 aa-0.59□□□□□ -2.5
SMC4-223ENST00000493695 BSNQ9UPA5 3926 aa-0.59□□□□□ -2.5
SMC4-223ENST00000493695 CFTRP13569 1480 aa-0.6□□□□□ -2.5
SMC4-223ENST00000493695 TRAV13-2A0A0B4J235 113 aa-0.6□□□□□ -2.51
SMC4-223ENST00000493695 M0R135 149 aa-0.6□□□□□ -2.51
SMC4-223ENST00000493695 Q8IZM0 81 aa-0.6□□□□□ -2.51
SMC4-223ENST00000493695 Q8N8P6 123 aa-0.6□□□□□ -2.51
SMC4-223ENST00000493695 AMELXQ99217 191 aa-0.6□□□□□ -2.51
SMC4-223ENST00000493695 PFDN5Q99471 154 aa-0.6□□□□□ -2.51
SMC4-223ENST00000493695 LENEPQ9Y5L5 61 aa-0.6□□□□□ -2.51
SMC4-223ENST00000493695 SPCS1Q9Y6A9 102 aa-0.6□□□□□ -2.51
SMC4-223ENST00000493695 R4GMQ9 66 aa-0.6□□□□□ -2.51
SMC4-223ENST00000493695 MYH8P13535 1937 aa-0.6□□□□□ -2.51
SMC4-223ENST00000493695 ARAP2Q8WZ64 1704 aa-0.61□□□□□ -2.51
SMC4-223ENST00000493695 DSTQ03001 7570 aaKnown RBP-0.61□□□□□ -2.51
SMC4-223ENST00000493695 SPRR1AP35321 89 aa-0.61□□□□□ -2.51
SMC4-223ENST00000493695 LSM10Q969L4 123 aaKnown RBP-0.61□□□□□ -2.51
SMC4-223ENST00000493695 BCL9LQ86UU0 1499 aa-0.61□□□□□ -2.51
SMC4-223ENST00000493695 ZNF236Q9UL36 1845 aa-0.61□□□□□ -2.51
SMC4-223ENST00000493695 I3L2K1 104 aa-0.62□□□□□ -2.51
SMC4-223ENST00000493695 HIST1H1DP16402 221 aaKnown RBP-0.62□□□□□ -2.51
SMC4-223ENST00000493695 C12orf73Q69YU5 71 aa-0.62□□□□□ -2.51
SMC4-223ENST00000493695 SMIM4Q8WVI0 70 aa-0.62□□□□□ -2.51
SMC4-223ENST00000493695 LINC00472Q9H8W2 130 aa-0.62□□□□□ -2.51
SMC4-223ENST00000493695 NPVFQ9HCQ7 196 aa-0.62□□□□□ -2.51
SMC4-223ENST00000493695 ARPC4P59998 168 aa-0.63□□□□□ -2.51
SMC4-223ENST00000493695 SNRNP25Q9BV90 132 aaKnown RBP-0.63□□□□□ -2.51
SMC4-223ENST00000493695 MUC2Q02817 5179 aa-0.63□□□□□ -2.51
SMC4-223ENST00000493695 PPIP5K1Q6PFW1 1433 aa-0.64□□□□□ -2.51
SMC4-223ENST00000493695 PLCE1Q9P212 2302 aa-0.64□□□□□ -2.51
SMC4-223ENST00000493695 RBM3P98179 157 aaKnown RBP-0.64□□□□□ -2.51
SMC4-223ENST00000493695 C10orf128Q5T292 105 aa-0.64□□□□□ -2.51
SMC4-223ENST00000493695 Q6AWC8 147 aa-0.64□□□□□ -2.51
SMC4-223ENST00000493695 AQP10Q96PS8 301 aa-0.64□□□□□ -2.51
SMC4-223ENST00000493695 PDCD10Q9BUL8 212 aa-0.64□□□□□ -2.51
SMC4-223ENST00000493695 RERGLQ9H628 205 aa-0.64□□□□□ -2.51
SMC4-223ENST00000493695 GVINP1Q7Z2Y8 2422 aa-0.64□□□□□ -2.51
SMC4-223ENST00000493695 COL6A3P12111 3177 aa-0.64□□□□□ -2.51
SMC4-223ENST00000493695 PHLPP1O60346 1717 aa-0.64□□□□□ -2.51
SMC4-223ENST00000493695 C10orf71Q711Q0 1435 aa-0.64□□□□□ -2.51
SMC4-223ENST00000493695 TP53AIP1Q9HCN2 124 aa-0.65□□□□□ -2.51
SMC4-223ENST00000493695 SERP1Q9Y6X1 66 aa-0.65□□□□□ -2.51
SMC4-223ENST00000493695 ATRQ13535 2644 aa-0.65□□□□□ -2.51
SMC4-223ENST00000493695 ERCC6L2Q5T890 1561 aa-0.66□□□□□ -2.51
SMC4-223ENST00000493695 DOCK2Q92608 1830 aa-0.66□□□□□ -2.51
SMC4-223ENST00000493695 PIGBOS1A0A0B4J2F0 54 aa-0.66□□□□□ -2.52
SMC4-223ENST00000493695 HAMPP81172 84 aa-0.66□□□□□ -2.52
SMC4-223ENST00000493695 SPAG11BQ08648 103 aa-0.66□□□□□ -2.52
SMC4-223ENST00000493695 SPAG11AQ6PDA7 123 aa-0.66□□□□□ -2.52
SMC4-223ENST00000493695 COPS9Q8WXC6 57 aa-0.66□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 339.3 ms