RNA–Protein interactions for RNA: ENST00000492512.1

GPNMB-213, Transcript of glycoprotein nmb, humanhuman

TSL 3

Gene GPNMB, Length 447 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-213ENST00000492512 SMIM17P0DL12 118 aa8.56□□□□□ -1.04
GPNMB-213ENST00000492512 SSTP61278 116 aa8.56□□□□□ -1.04
GPNMB-213ENST00000492512 ZNF726P1Q15940 193 aa8.56□□□□□ -1.04
GPNMB-213ENST00000492512 CFAP161Q6P656 301 aa8.56□□□□□ -1.04
GPNMB-213ENST00000492512 PRSS3P2Q8NHM4 247 aa8.56□□□□□ -1.04
GPNMB-213ENST00000492512 A0A1B0GUV1 79 aa8.55□□□□□ -1.04
GPNMB-213ENST00000492512 C15orf56Q8N910 161 aa8.55□□□□□ -1.04
GPNMB-213ENST00000492512 TMEM243Q9BU79 118 aa8.55□□□□□ -1.04
GPNMB-213ENST00000492512 GFRA4Q9GZZ7 299 aa8.55□□□□□ -1.04
GPNMB-213ENST00000492512 LPAP08519 4548 aa8.55□□□□□ -1.04
GPNMB-213ENST00000492512 SNAI2O43623 268 aa8.54□□□□□ -1.04
GPNMB-213ENST00000492512 CXCL1P09341 107 aa8.54□□□□□ -1.04
GPNMB-213ENST00000492512 AP1S3Q96PC3 154 aa8.54□□□□□ -1.04
GPNMB-213ENST00000492512 SSBP4Q9BWG4 385 aaPredicted RBP8.54□□□□□ -1.04
GPNMB-213ENST00000492512 OR5AL1P0C617 328 aa8.53□□□□□ -1.04
GPNMB-213ENST00000492512 AKR1C3P42330 323 aa8.53□□□□□ -1.04
GPNMB-213ENST00000492512 HIGD2BQ4VC39 106 aa8.53□□□□□ -1.04
GPNMB-213ENST00000492512 A0A096LNI7 61 aa8.52□□□□□ -1.05
GPNMB-213ENST00000492512 GAGE12HA6NDE8 117 aa8.52□□□□□ -1.05
GPNMB-213ENST00000492512 H7C1H1 209 aa8.52□□□□□ -1.05
GPNMB-213ENST00000492512 UBE2L6O14933 153 aa8.52□□□□□ -1.05
GPNMB-213ENST00000492512 AKR1C8PQ5T2L2 129 aa8.52□□□□□ -1.05
GPNMB-213ENST00000492512 CST9LP1Q5W188 147 aa8.52□□□□□ -1.05
GPNMB-213ENST00000492512 TCEAL7Q9BRU2 100 aa8.52□□□□□ -1.05
GPNMB-213ENST00000492512 M0QY20 66 aa8.51□□□□□ -1.05
GPNMB-213ENST00000492512 MGPP08493 103 aa8.51□□□□□ -1.05
GPNMB-213ENST00000492512 SRSF9Q13242 221 aaKnown RBP eCLIP8.51□□□□□ -1.05
GPNMB-213ENST00000492512 Q6ZRP5 223 aa8.51□□□□□ -1.05
GPNMB-213ENST00000492512 IGKV3OR2-268A0A0C4DH90 116 aa8.5□□□□□ -1.05
GPNMB-213ENST00000492512 TMEM218A2RU14 115 aa8.5□□□□□ -1.05
GPNMB-213ENST00000492512 FHITP49789 147 aa8.5□□□□□ -1.05
GPNMB-213ENST00000492512 FAM213BQ8TBF2 198 aa8.5□□□□□ -1.05
GPNMB-213ENST00000492512 SMDT1Q9H4I9 107 aa8.5□□□□□ -1.05
GPNMB-213ENST00000492512 LINC00474Q9P2X8 69 aa8.5□□□□□ -1.05
GPNMB-213ENST00000492512 MAP1LC3B2A6NCE7 125 aa8.49□□□□□ -1.05
GPNMB-213ENST00000492512 PEA15Q15121 130 aa8.49□□□□□ -1.05
GPNMB-213ENST00000492512 SUMO4Q6EEV6 95 aa8.49□□□□□ -1.05
GPNMB-213ENST00000492512 MAP1LC3BQ9GZQ8 125 aa8.49□□□□□ -1.05
GPNMB-213ENST00000492512 GVQW2A0A096LPI5 108 aaPredicted RBP8.48□□□□□ -1.05
GPNMB-213ENST00000492512 TRAV1-1A0A0B4J248 108 aa8.48□□□□□ -1.05
GPNMB-213ENST00000492512 FAM231BA6NCW3 169 aa8.48□□□□□ -1.05
GPNMB-213ENST00000492512 S100A9P06702 114 aaKnown RBP8.48□□□□□ -1.05
GPNMB-213ENST00000492512 H2AFB1P0C5Y9 115 aa8.48□□□□□ -1.05
GPNMB-213ENST00000492512 C10orf91Q5T1B1 145 aa8.48□□□□□ -1.05
GPNMB-213ENST00000492512 PGLYRP4Q96LB8 373 aa8.48□□□□□ -1.05
GPNMB-213ENST00000492512 PKIGQ9Y2B9 76 aa8.48□□□□□ -1.05
GPNMB-213ENST00000492512 CARHSP1Q9Y2V2 147 aaKnown RBP8.48□□□□□ -1.05
GPNMB-213ENST00000492512 APOC3P02656 99 aa8.47□□□□□ -1.05
GPNMB-213ENST00000492512 AMTP48728 403 aa8.47□□□□□ -1.05
GPNMB-213ENST00000492512 RASL11AQ6T310 242 aa8.47□□□□□ -1.05
GPNMB-213ENST00000492512 BAGE2Q86Y30 109 aa8.47□□□□□ -1.05
GPNMB-213ENST00000492512 SVBPQ8N300 66 aa8.47□□□□□ -1.05
GPNMB-213ENST00000492512 MLST8Q9BVC4 326 aa8.47□□□□□ -1.05
GPNMB-213ENST00000492512 SEC11CQ9BY50 192 aa8.47□□□□□ -1.05
GPNMB-213ENST00000492512 KRTAP9-2Q9BYQ4 174 aa8.47□□□□□ -1.05
GPNMB-213ENST00000492512 F8W036 122 aa8.46□□□□□ -1.06
GPNMB-213ENST00000492512 COTL1Q14019 142 aa8.46□□□□□ -1.06
GPNMB-213ENST00000492512 MBD3L1Q8WWY6 194 aa8.46□□□□□ -1.06
GPNMB-213ENST00000492512 CHCHD10Q8WYQ3 142 aaPredicted RBP8.46□□□□□ -1.06
GPNMB-213ENST00000492512 TPPP3Q9BW30 176 aa8.46□□□□□ -1.06
GPNMB-213ENST00000492512 PAGE4O60829 102 aa8.45□□□□□ -1.06
GPNMB-213ENST00000492512 NIT2Q9NQR4 276 aa8.45□□□□□ -1.06
GPNMB-213ENST00000492512 SCO2A0A1W2PP80 73 aa8.44□□□□□ -1.06
GPNMB-213ENST00000492512 SNAPINO95295 136 aa8.44□□□□□ -1.06
GPNMB-213ENST00000492512 IFNA1P01562 189 aa8.44□□□□□ -1.06
GPNMB-213ENST00000492512 AMMECR1LQ6DCA0 310 aa8.44□□□□□ -1.06
GPNMB-213ENST00000492512 SFT2D1Q8WV19 159 aa8.44□□□□□ -1.06
GPNMB-213ENST00000492512 EIF5A2Q9GZV4 153 aaKnown RBP8.44□□□□□ -1.06
GPNMB-213ENST00000492512 TAGLN2P37802 199 aaKnown RBP8.43□□□□□ -1.06
GPNMB-213ENST00000492512 SRSF3P84103 164 aaKnown RBP8.43□□□□□ -1.06
GPNMB-213ENST00000492512 ZNF664Q8N3J9 261 aa8.43□□□□□ -1.06
GPNMB-213ENST00000492512 FER1L6-AS1Q8NA97 138 aa8.43□□□□□ -1.06
GPNMB-213ENST00000492512 CARD19Q96LW7 228 aa8.43□□□□□ -1.06
GPNMB-213ENST00000492512 CACNG7P62955 275 aa8.42□□□□□ -1.06
GPNMB-213ENST00000492512 LINC00526Q96FQ7 95 aa8.42□□□□□ -1.06
GPNMB-213ENST00000492512 MUC2Q02817 5179 aa8.41□□□□□ -1.06
GPNMB-213ENST00000492512 TRGC1P0CF51 173 aa8.41□□□□□ -1.06
GPNMB-213ENST00000492512 IGLC6P0CF74 106 aa8.41□□□□□ -1.06
GPNMB-213ENST00000492512 ADCYAP1P18509 176 aa8.41□□□□□ -1.06
GPNMB-213ENST00000492512 FOXI1Q12951 378 aa8.41□□□□□ -1.06
GPNMB-213ENST00000492512 RNASEKQ6P5S7 137 aaKnown RBP8.41□□□□□ -1.06
GPNMB-213ENST00000492512 PSORS1C2Q9UIG4 136 aa8.41□□□□□ -1.06
GPNMB-213ENST00000492512 TRAV26-2A0A0B4J265 109 aa8.4□□□□□ -1.06
GPNMB-213ENST00000492512 A0A0U1RQV1 116 aa8.4□□□□□ -1.06
GPNMB-213ENST00000492512 SCO1O75880 301 aa8.4□□□□□ -1.06
GPNMB-213ENST00000492512 XCL1P47992 114 aa8.4□□□□□ -1.06
GPNMB-213ENST00000492512 CCL20P78556 96 aa8.4□□□□□ -1.06
GPNMB-213ENST00000492512 IGHV1-58A0A0C4DH39 117 aa8.39□□□□□ -1.07
GPNMB-213ENST00000492512 A0A1B0GV50 99 aa8.39□□□□□ -1.07
GPNMB-213ENST00000492512 C9JQL5 133 aa8.39□□□□□ -1.07
GPNMB-213ENST00000492512 MT-ND6P03923 174 aa8.39□□□□□ -1.07
GPNMB-213ENST00000492512 BCL2P10415 239 aa8.39□□□□□ -1.07
GPNMB-213ENST00000492512 PTTG1IPP53801 180 aa8.39□□□□□ -1.07
GPNMB-213ENST00000492512 RPS20P60866 119 aaKnown RBP8.39□□□□□ -1.07
GPNMB-213ENST00000492512 SYCNQ0VAF6 134 aa8.39□□□□□ -1.07
GPNMB-213ENST00000492512 OR2D3Q8NGH3 330 aa8.39□□□□□ -1.07
GPNMB-213ENST00000492512 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.38□□□□□ -1.07
GPNMB-213ENST00000492512 IGKV2-29A2NJV5 120 aaPredicted RBP8.38□□□□□ -1.07
GPNMB-213ENST00000492512 F2Z2F3 143 aa8.38□□□□□ -1.07
GPNMB-213ENST00000492512 ZNF561-AS1K7EIQ3 104 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms