RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.13□□□□□ -2.39
PTPN4-212ENST00000488896 SMIM4Q8WVI0 70 aa0.13□□□□□ -2.39
PTPN4-212ENST00000488896 ABCA12Q86UK0 2595 aa0.13□□□□□ -2.39
PTPN4-212ENST00000488896 MYH7P12883 1935 aa0.13□□□□□ -2.39
PTPN4-212ENST00000488896 LOC100130705A0A1B0GUX0 176 aa0.12□□□□□ -2.39
PTPN4-212ENST00000488896 BCE1O60756 84 aa0.12□□□□□ -2.39
PTPN4-212ENST00000488896 MRPL54Q6P161 138 aaKnown RBP0.12□□□□□ -2.39
PTPN4-212ENST00000488896 BAGE2Q86Y30 109 aa0.12□□□□□ -2.39
PTPN4-212ENST00000488896 MYOZ3Q8TDC0 251 aa0.12□□□□□ -2.39
PTPN4-212ENST00000488896 SPCS1Q9Y6A9 102 aa0.12□□□□□ -2.39
PTPN4-212ENST00000488896 MAP2P11137 1827 aaKnown RBP0.12□□□□□ -2.39
PTPN4-212ENST00000488896 CASKIN1Q8WXD9 1431 aa0.12□□□□□ -2.39
PTPN4-212ENST00000488896 PTPRQQ9UMZ3 2332 aa0.12□□□□□ -2.39
PTPN4-212ENST00000488896 ZNF142P52746 1687 aaPredicted RBP0.11□□□□□ -2.39
PTPN4-212ENST00000488896 GOLGA3Q08378 1498 aa0.11□□□□□ -2.39
PTPN4-212ENST00000488896 IFT140Q96RY7 1462 aa0.11□□□□□ -2.39
PTPN4-212ENST00000488896 BDP1A6H8Y1 2624 aa0.11□□□□□ -2.39
PTPN4-212ENST00000488896 F8VRH5 84 aa0.11□□□□□ -2.39
PTPN4-212ENST00000488896 TNFP01375 233 aa0.11□□□□□ -2.39
PTPN4-212ENST00000488896 CCL18P55774 89 aa0.11□□□□□ -2.39
PTPN4-212ENST00000488896 Q6AWC8 147 aa0.11□□□□□ -2.39
PTPN4-212ENST00000488896 RPL13AP3Q6NVV1 102 aa0.11□□□□□ -2.39
PTPN4-212ENST00000488896 SNRNP25Q9BV90 132 aaKnown RBP0.11□□□□□ -2.39
PTPN4-212ENST00000488896 CYP4F30PQ9H0H9 118 aa0.11□□□□□ -2.39
PTPN4-212ENST00000488896 DYNLRB1Q9NP97 96 aa0.11□□□□□ -2.39
PTPN4-212ENST00000488896 TRBV7-3A0A075B6L6 115 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 IGLC7A0M8Q6 106 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 K7EP13 123 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 APOC3P02656 99 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 S100A1P23297 94 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 DEFB109BQ30KR1 87 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 C9orf153Q5TBE3 101 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 Q5VV11 94 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 Q6JHZ5 121 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 C8orf59Q8N0T1 100 aaPredicted RBP0.1□□□□□ -2.39
PTPN4-212ENST00000488896 MGST2Q99735 147 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 SPANXDQ9BXN6 97 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 CNFNQ9BYD5 112 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 LENEPQ9Y5L5 61 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 NAIPQ13075 1403 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 PPIP5K1Q6PFW1 1433 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 LAMC3Q9Y6N6 1575 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 ARAP2Q8WZ64 1704 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 PKDREJQ9NTG1 2253 aa0.1□□□□□ -2.39
PTPN4-212ENST00000488896 DMBT1Q9UGM3 2413 aaPredicted RBP0.09□□□□□ -2.39
PTPN4-212ENST00000488896 ROCK2O75116 1388 aaKnown RBP0.09□□□□□ -2.39
PTPN4-212ENST00000488896 SPTBN2O15020 2390 aa0.09□□□□□ -2.39
PTPN4-212ENST00000488896 A0A1B0GV90 55 aa0.09□□□□□ -2.4
PTPN4-212ENST00000488896 SPAARA0A1B0GVQ0 90 aa0.09□□□□□ -2.4
PTPN4-212ENST00000488896 CHKB-CPT1BH3BT56 60 aa0.09□□□□□ -2.4
PTPN4-212ENST00000488896 FGF7P21781 194 aa0.09□□□□□ -2.4
PTPN4-212ENST00000488896 TPPP2P59282 170 aa0.09□□□□□ -2.4
PTPN4-212ENST00000488896 UBA52P62987 128 aaKnown RBP0.09□□□□□ -2.4
PTPN4-212ENST00000488896 DCDP81605 110 aaKnown RBP0.09□□□□□ -2.4
PTPN4-212ENST00000488896 FDCSPQ8NFU4 85 aa0.09□□□□□ -2.4
PTPN4-212ENST00000488896 FAIMQ9NVQ4 179 aa0.09□□□□□ -2.4
PTPN4-212ENST00000488896 GNG8Q9UK08 70 aa0.09□□□□□ -2.4
PTPN4-212ENST00000488896 ADGRB1O14514 1584 aa0.09□□□□□ -2.4
PTPN4-212ENST00000488896 CFTRP13569 1480 aa0.09□□□□□ -2.4
PTPN4-212ENST00000488896 ZNF609O15014 1411 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 GOLGA4Q13439 2230 aaKnown RBP0.08□□□□□ -2.4
PTPN4-212ENST00000488896 USF3Q68DE3 2245 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 FAM24AA6NFZ4 105 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 OOSP1A8MZH6 123 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 C10orf142B7Z368 130 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 UQCR11O14957 56 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 SSSCA1O60232 199 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 GNG11P61952 73 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 SFTA2Q6UW10 78 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 C5orf38Q86SI9 138 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 Q8IZM0 81 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 SVBPQ8N300 66 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 C1orf54Q8WWF1 131 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 PP6455Q8WZ26 134 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 NDUFA4L2Q9NRX3 87 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 LINC00474Q9P2X8 69 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 GRIN2AQ12879 1464 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 ZFYVE26Q68DK2 2539 aa0.08□□□□□ -2.4
PTPN4-212ENST00000488896 DOCK1Q14185 1865 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 IFT172Q9UG01 1749 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 UNC13BO14795 1591 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 ERCC6L2Q5T890 1561 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 WNK2Q9Y3S1 2297 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 LAMB1P07942 1786 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 NCOR2Q9Y618 2525 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 LOC285095A0A1B0GVY8 99 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 HMGN4O00479 90 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 COX17Q14061 63 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 WFDC2Q14508 124 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 COMMD6Q7Z4G1 85 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 TP53AIP1Q9HCN2 124 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 MANBALQ9NQG1 85 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 LINC01558Q9Y6Z2 57 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 MRC1P22897 1456 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 DOPEY2Q9Y3R5 2298 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 NWD2Q9ULI1 1742 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 AKAP6Q13023 2319 aa0.07□□□□□ -2.4
PTPN4-212ENST00000488896 PLXNB2O15031 1838 aa0.06□□□□□ -2.4
PTPN4-212ENST00000488896 DOCK2Q92608 1830 aa0.06□□□□□ -2.4
PTPN4-212ENST00000488896 WNK3Q9BYP7 1800 aa0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms